View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4287_high_6 (Length: 360)
Name: NF4287_high_6
Description: NF4287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4287_high_6 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 11 - 360
Target Start/End: Original strand, 14241720 - 14242069
Alignment:
| Q |
11 |
catagggatgttgtgagtgacagatacacaagtggcaataggtagagcagtataagggacaccacagacaaggtcgaatttagtgttggagacagaggaa |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14241720 |
catagggatgttgtgagtgacagatacacaagtggcaataggtagagcagtataagggacaccacagacaaggtcgaatttagtgttggagacagaggaa |
14241819 |
T |
|
| Q |
111 |
atcatagtttgagaaatttgtcggaggacagaagggtaagatataataaggcggagatctatataaattggtgaggagatgccggatttaagcttgaagt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14241820 |
atcatagtttgagaaatttgtcggaggacagaagggtaagatataataaggcggaggtctatataaattggtgaggagatgccggatttaagcttgaagt |
14241919 |
T |
|
| Q |
211 |
taccaaatttgacagctgagatttcatggagttgaagaactaaagactccattgatgtgcctttctcagtgtgcttaaaggattatctaaaaccttcaga |
310 |
Q |
| |
|
| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14241920 |
ttccaaatttgacagctgagatttcatggagtttaagaactaaagactccattgatgtgcctttctcagtgtgcttaaaggattatctaaaaccttcaga |
14242019 |
T |
|
| Q |
311 |
acaatcagtgtcattcagtgagtaaaatcatcaataaaaataacgcatac |
360 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14242020 |
acaatcagtgtcattcagtgagtaaaatcatcaataaaaataacgcatac |
14242069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 39 - 250
Target Start/End: Complemental strand, 5032568 - 5032357
Alignment:
| Q |
39 |
caagtggcaataggtagagcagtataagggacaccacagacaaggtcgaatttagtgttggagacagaggaaatcatagtttgagaaatttgtcggagga |
138 |
Q |
| |
|
||||||||||| ||||| ||||| |||||||||||||| || || || ||| ||| ||||| || ||||| | || ||||| ||||| |||||| |
|
|
| T |
5032568 |
caagtggcaatgggtagggcagtgtaagggacaccacataccagatcaaatgaggtggaagagactgatgaaattaaggtctgagagatttgctggagga |
5032469 |
T |
|
| Q |
139 |
cagaagggtaagatataataaggcggagatctatataaattggtgaggagatgccggatttaagcttgaagttaccaaatttgacagctgagatttcatg |
238 |
Q |
| |
|
|||||| ||||| || || || ||||| || || || ||||||||||||||||| ||||| ||||||||||| || ||||| |||||||| || ||||| |
|
|
| T |
5032468 |
gagaaggataagaaattatgagacggaggtcaatgtagattggtgaggagatgccagatttgagcttgaagttgccgaatttcacagctgatatctcatg |
5032369 |
T |
|
| Q |
239 |
gagttgaagaac |
250 |
Q |
| |
|
|||||||||||| |
|
|
| T |
5032368 |
gagttgaagaac |
5032357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 135 - 250
Target Start/End: Complemental strand, 7990652 - 7990537
Alignment:
| Q |
135 |
aggacagaagggtaagatataataaggcggagatctatataaattggtgaggagatgccggatttaagcttgaagttaccaaatttgacagctgagattt |
234 |
Q |
| |
|
|||| |||||| |||||||| || || ||||| || || || || ||||||| |||||| ||||| ||||||||||| || ||||| |||||||| || | |
|
|
| T |
7990652 |
aggagagaaggataagatatgatgagacggaggtcaatgtagatcggtgaggtgatgccagatttgagcttgaagttgccgaatttcacagctgatatct |
7990553 |
T |
|
| Q |
235 |
catggagttgaagaac |
250 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
7990552 |
catggagttgaagaac |
7990537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University