View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4287_low_1 (Length: 809)
Name: NF4287_low_1
Description: NF4287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4287_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 661; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 661; E-Value: 0
Query Start/End: Original strand, 30 - 803
Target Start/End: Complemental strand, 56068654 - 56067869
Alignment:
| Q |
30 |
atttgtattcttttatggacatgaactagtcactcaattatttaggttctttcaagtgaaagtgtaggttgagtttcccaaagtttattaacggaatcat |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |||||||||| | |||||||| |
|
|
| T |
56068654 |
atttgtattcttttatggacatgaactagtccctcaattatttaggttctttcaagtgaaagtgtgggttgagttttccaaagtttaat---ggaatcat |
56068558 |
T |
|
| Q |
130 |
ggtgagtcactacaattttgacaaaaactacggaacaaaatccgtgattttaccaaacttacttcctgcttttgcagnnnnnnnnttcaaatgtattcca |
229 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
56068557 |
gatgagtcactacaattttgacaaaaactacggaacaaaatccgtgattttaccaaacttacttcctgcttttgcagcaaaaaaattcaaatgtattcca |
56068458 |
T |
|
| Q |
230 |
aatcatcaccaaaattaatttgtatcatgtatatatattctcaatctcaaaacaaaaatacaaatcatcactatacttaatgtgtatattataatctcaa |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56068457 |
aatcatcaccaaaattaatttgtatcatgtatatatattctcaatctcaaaacaaaaatacaaatcatcactatacttaatgtgtatattataatctcaa |
56068358 |
T |
|
| Q |
330 |
caacaa---------------taacaaactagtgtatagttctgcaatcagacattaaaagcctcaaaaagaggcataaataaacaaataaacctgctat |
414 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
56068357 |
caacaaaaatacaaacaacaataacaaactagtgtatagttctgcaatcaaacattaaaagcctcaaaaggaggcataaataaacaaataaacctgctat |
56068258 |
T |
|
| Q |
415 |
tagttgttgcaaatataattaaccttggaagaatcgatgaatactaccttgctgctccttactactaccaatcatattcatagagaaattcttgtctcct |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56068257 |
tagttgttgcaaatataattaaccttggaagaatcgatgaatactaccttcctgctccttattactaccaatcatattcatagagaaattcttgtctcct |
56068158 |
T |
|
| Q |
515 |
tcaatttccctatacttgagaagataacccttaagaggctctgcatattcttcaaagccaagtgtagtcatggcccacacaagatcatcaccgtttattg |
614 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56068157 |
tcaatttccctatacttgagaagataacccttaagaggctctgcatattcttcaaagccaagtgtagtcatggcccacacaagatcatcaccgtttattg |
56068058 |
T |
|
| Q |
615 |
tcttcctcttctctttctgacacttttcagatgcttcacctgttatgaagcttatgaactctgatacacactcttgcatcgtttctttagcttctttcga |
714 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56068057 |
tcttcctcttctctttctgacacttttcagatgcttcacctgttatgaagcttatgaactctgatacacactcttgcatcgtttctttagcttctttcga |
56067958 |
T |
|
| Q |
715 |
tatctttgctctcgccggtaacgctttcttcatgatcctacccacgtttgctatgggaagaagcctttcttgcagtaattctctgctcc |
803 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56067957 |
tatctttgctctcgtcggtaacgctttcttcatgatcctacccacgtttgctatgggaagaagcctttcttgcagtaattctctgctcc |
56067869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 98; Significance: 8e-48; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 558 - 787
Target Start/End: Complemental strand, 9722852 - 9722623
Alignment:
| Q |
558 |
catattcttcaaagccaagtgtagtcatggcccacacaagatcatcaccgtttattgtcttcctcttctctttctgacacttttcagatgcttcacctgt |
657 |
Q |
| |
|
|||| |||||||| ||||| || ||||| ||||| | ||||||||||||||| ||||| ||||||||||||||||||||||| ||||| ||||| || || |
|
|
| T |
9722852 |
cataatcttcaaatccaagagttgtcatagcccaaagaagatcatcaccgttgattgttttcctcttctctttctgacacttatcagaagcttctccagt |
9722753 |
T |
|
| Q |
658 |
tatgaagcttatgaactctgatacacactcttgcatcgtttctttagcttctttcgatatctttgctctcgccggtaacgctttcttcatgatcctaccc |
757 |
Q |
| |
|
|||||| || || |||||||||||||||||||| | |||||||| |||||||| || |||||||| | || ||||| || || ||||||||||||| | |
|
|
| T |
9722752 |
tatgaaactgataaactctgatacacactcttgtactgtttcttttgcttcttttgagatctttgcgtttgctggtaaagcctttttcatgatcctactc |
9722653 |
T |
|
| Q |
758 |
acgtttgctatgggaagaagcctttcttgc |
787 |
Q |
| |
|
||||||||||| ||||||| ||| |||||| |
|
|
| T |
9722652 |
acgtttgctattggaagaaacctatcttgc |
9722623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 565 - 711
Target Start/End: Complemental strand, 38281787 - 38281641
Alignment:
| Q |
565 |
ttcaaagccaagtgtagtcatggcccacacaagatcatcaccgtttattgtcttcctcttctctttctgacacttttcagatgcttcacctgttatgaag |
664 |
Q |
| |
|
|||||| |||||||| ||||| ||||| | |||||||||||| || ||||| ||||| || ||| |||||||||| ||||| |||||||| || ||||| |
|
|
| T |
38281787 |
ttcaaaaccaagtgttgtcatagcccaaagaagatcatcaccattaattgttttccttttttctctctgacacttatcagaagcttcaccagtaatgaaa |
38281688 |
T |
|
| Q |
665 |
cttatgaactctgatacacactcttgcatcgtttctttagcttcttt |
711 |
Q |
| |
|
|| |||||||| || ||||| ||||| | ||||||||| |||||||| |
|
|
| T |
38281687 |
ctaatgaactcagagacacattcttgaaccgtttcttttgcttcttt |
38281641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 8e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 578 - 768
Target Start/End: Complemental strand, 41866735 - 41866545
Alignment:
| Q |
578 |
gtagtcatggcccacacaagatcatcaccgtttattgtcttcctcttctctttctgacacttttcagatgcttcacctgttatgaagcttatgaactctg |
677 |
Q |
| |
|
|||||||| ||||| | ||||| || ||||| || ||||| | |||||| |||||||||| || || |||||||| || |||||||| |||||||| | |
|
|
| T |
41866735 |
gtagtcatcgcccaaagtagatcgtcgccgttgatcgtctttcgtttctctctctgacacttatcggaagcttcaccggtgatgaagctgatgaactccg |
41866636 |
T |
|
| Q |
678 |
atacacactcttgcatcgtttctttagcttctttcgatatctttgctctcgccggtaacgctttcttcatgatcctacccacgtttgctat |
768 |
Q |
| |
|
||||||| || |||| |||||| ||||| |||||||| ||||| || | || |||||||| |||||||| || || | |||||||||||| |
|
|
| T |
41866635 |
atacacattcctgcaccgtttccttagcatctttcgagatcttcgcgtttgctggtaacgccttcttcattattctgctcacgtttgctat |
41866545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 8e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 598 - 723
Target Start/End: Original strand, 39786325 - 39786450
Alignment:
| Q |
598 |
atcatcaccgtttattgtcttcctcttctctttctgacacttttcagatgcttcacctgttatgaagcttatgaactctgatacacactcttgcatcgtt |
697 |
Q |
| |
|
||||||||| || | |||||| | |||||| || |||||||| |||||||||||||| |||| || || | |||||||| |||||||||||||| ||| |
|
|
| T |
39786325 |
atcatcaccattcactgtcttgcgcttctccttgtgacacttgtcagatgcttcaccagttacaaaactaacaaactctgagacacactcttgcatggtt |
39786424 |
T |
|
| Q |
698 |
tctttagcttctttcgatatctttgc |
723 |
Q |
| |
|
|||||||| |||||||| || ||||| |
|
|
| T |
39786425 |
tctttagcatctttcgagatttttgc |
39786450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 598 - 776
Target Start/End: Complemental strand, 23569873 - 23569695
Alignment:
| Q |
598 |
atcatcaccgtttattgtcttcctcttctctttctgacacttttcagatgcttcacctgttatgaagcttatgaactctgatacacactcttgcatcgtt |
697 |
Q |
| |
|
|||||| ||||| || ||||||| |||||| |||||||| || || ||||| || || |||||||| ||||||||||| ||||||||||| | ||| |
|
|
| T |
23569873 |
atcatcgccgttgatcgtcttccgcttctcacgttgacacttatcggaggcttcgccggtgatgaagctgatgaactctgaaacacactcttgaactgtt |
23569774 |
T |
|
| Q |
698 |
tctttagcttctttcgatatctttgctctcgccggtaacgctttcttcatgatcctacccacgtttgctatgggaagaa |
776 |
Q |
| |
|
|| || || ||||| || ||||| || |||| |||| ||||| ||||||||||| | ||||||||||| ||||||| |
|
|
| T |
23569773 |
tcctttgcgtcttttgagatcttcgcgttcgctggtagtgcttttttcatgatcctgcttacgtttgctattggaagaa |
23569695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 598 - 645
Target Start/End: Complemental strand, 22140004 - 22139957
Alignment:
| Q |
598 |
atcatcaccgtttattgtcttcctcttctctttctgacacttttcaga |
645 |
Q |
| |
|
|||||||||||| || ||||||||||||||| |||||||||| ||||| |
|
|
| T |
22140004 |
atcatcaccgttaatcgtcttcctcttctctctctgacacttatcaga |
22139957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 598 - 645
Target Start/End: Complemental strand, 40539394 - 40539347
Alignment:
| Q |
598 |
atcatcaccgtttattgtcttcctcttctctttctgacacttttcaga |
645 |
Q |
| |
|
|||||||||||| || ||||||||||||||| |||||||||| ||||| |
|
|
| T |
40539394 |
atcatcaccgttaatcgtcttcctcttctctctctgacacttatcaga |
40539347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University