View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4287_low_11 (Length: 324)
Name: NF4287_low_11
Description: NF4287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4287_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 17 - 317
Target Start/End: Complemental strand, 18101457 - 18101157
Alignment:
| Q |
17 |
gtgaaaaggacaccacaaactgtcaaattctctgacacacttttcttcgaagctttcaaaaccttgtgaaccatatcaactctcatttcatccgcatgct |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
18101457 |
gtgaaaaggacaccacaaactgtcaaattctctgacacacttttcttcaaagctttcaaaaccttgtgaaccatatcaactctcatttcatccgtatgct |
18101358 |
T |
|
| Q |
117 |
attattacccaatccaatttatgtactaacaccaaacaaatttcccagcatctcacccactactccaaagtccaaactcaacacaatattcaaactcaac |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18101357 |
attattacccaatccaatttatgtactaacaccaaacaaatttcccagcatctcacccactactccaaagtccaaactcaacacaatattcaaactcaac |
18101258 |
T |
|
| Q |
217 |
ataataccaaaaaatgcaatcattaactttccttttagctttctttatattttttacatcaatttcaaacatttcacattcaaacacactcccttcatat |
316 |
Q |
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|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18101257 |
ataataccaaaaaatgcaatcattagctttccttttagctttctttatattttttacatcaatttcaaacatttcacattcaaacacactcccttcatat |
18101158 |
T |
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| Q |
317 |
c |
317 |
Q |
| |
|
| |
|
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| T |
18101157 |
c |
18101157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 17 - 317
Target Start/End: Complemental strand, 37859065 - 37858765
Alignment:
| Q |
17 |
gtgaaaaggacaccacaaactgtcaaattctctgacacacttttcttcgaagctttcaaaaccttgtgaaccatatcaactctcatttcatccgcatgct |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
37859065 |
gtgaaaaggacaccacaaactgtcaaattctctgacacacttttcttcaaagctttcaaaaccttgtgaaccatatcaactctcatttcatccgtatgct |
37858966 |
T |
|
| Q |
117 |
attattacccaatccaatttatgtactaacaccaaacaaatttcccagcatctcacccactactccaaagtccaaactcaacacaatattcaaactcaac |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37858965 |
attattacccaatccaatttatgtactaacaccaaacaaatttcccagcatctcacccactactccaaagtccaaactcaacacaatattcaaactcaac |
37858866 |
T |
|
| Q |
217 |
ataataccaaaaaatgcaatcattaactttccttttagctttctttatattttttacatcaatttcaaacatttcacattcaaacacactcccttcatat |
316 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37858865 |
ataataccaaaaaatgcaatcattagctttccttttagctttctttatattttttacatcaatttcaaacatttcacattcaaacacactcccttcatat |
37858766 |
T |
|
| Q |
317 |
c |
317 |
Q |
| |
|
| |
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|
| T |
37858765 |
c |
37858765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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