View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4287_low_12 (Length: 313)
Name: NF4287_low_12
Description: NF4287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4287_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 17 - 272
Target Start/End: Original strand, 42996055 - 42996309
Alignment:
| Q |
17 |
ggaagaaggtattatactttcaggtatgtagagtatagacacatacgtacaagaagttgctactatactatagtggaaacatataattgaaaatatggga |
116 |
Q |
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| T |
42996055 |
ggaagaaggtattatactttcaggtatgtagagtatagacacacacgtacaagaagttgctactatactatagtggaaacata-attggaaaatatggga |
42996153 |
T |
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| Q |
117 |
agcatgcatgcattagagagtagtcaagcatgaaaacggtagtagcattaatttaggaatagtnnnnnnngtgcatgacttagtcaatacatacatgaaa |
216 |
Q |
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| T |
42996154 |
agcatgcatgcattagagagtagtcaagcatgaaaacggtagtagcattaatttaggaatagtaaaaaaagtgcatgacttagtcaatacatacatgaaa |
42996253 |
T |
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| Q |
217 |
caatataataagaataaataatcttctattgaatgacgcacgcaaatattaaatat |
272 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42996254 |
caatataataagaataaataatcttctattgaatgacgcacgcaaatattaaatat |
42996309 |
T |
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