View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4287_low_2 (Length: 695)
Name: NF4287_low_2
Description: NF4287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4287_low_2 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 666; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 666; E-Value: 0
Query Start/End: Original strand, 14 - 695
Target Start/End: Complemental strand, 23044299 - 23043618
Alignment:
| Q |
14 |
catcacccctgaagcaaaaatagattcactcaacttctgatgaacaaatacagaatattccaaaaacataatttcgagcatatacaacaagtaacaaaac |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23044299 |
catcacccctgaagcaaaaatagattcactcaacttctgatgaacaaatacagaatattccaaaaacataatttcgagcatatacaacaagtaacaaaac |
23044200 |
T |
|
| Q |
114 |
aatttgcaaagtacagacggtataagtttagttatagaagaaaagcagaagtacaaaaaattctgcaagaaattattgactcgtcattcataaatttaaa |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23044199 |
aatttgcaaagtacagacggtataagtttagttatagaagaaaagcagaagtacaaaaaattctgcaagaaattattgactcgtcattcataaatttaaa |
23044100 |
T |
|
| Q |
214 |
atcaccaagatagaaatagagatagcagctgaacaaaggtatcagcacatttaacaaatcaaaaaggttaagactaaccacgtcggataacaatcaacca |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
23044099 |
atcaccaagatagaaatagagatagcagctgaacaaaggtatcagcacatttaacaaatcaaaaaggttaagactaaccacgtcggataacgatcaacca |
23044000 |
T |
|
| Q |
314 |
caacctgcatccgagtaacaacccatatcaagttctttttgcacatttctggcgtagaaccaaagccatcaccaagaagcccagcagtcttaacatgatt |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
23043999 |
caacctgcatccgagtaacaacccatatcaagttctttttgcacatttctggcgtagaaccaaagccatcaccaagaagcccggcagtcttaacatgatt |
23043900 |
T |
|
| Q |
414 |
aagtgcagtttcctgttatcaaaacaaataattaagatcccacaacaaatttgttacataaagtataaaatcaaaatctcacttgtacgagaatacctgc |
513 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
23043899 |
aagtgcagtttcctgttaccaaaacaaataattaagatcccacaacaaatttgttacataaagtataaaatcaaaatctcacttgtacgagcatacctgc |
23043800 |
T |
|
| Q |
514 |
aaatgattcattaacgtctctatagacgcagttttatccgcacctatttcgtacgatctaatcgaaaagttttggcgaaacacaagaccatcttgaacaa |
613 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23043799 |
aaatgattcattaacgtctctatagacgcagttttatccgcacctatttcgtacgatctaatcgaaaagttttggcgaaacacaagaccatcttgaacaa |
23043700 |
T |
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| Q |
614 |
ttttccctataccaaaagggtcaacaagcatatcaggtcgtcttggcttccaatcaagcatcatccactgcttctcagcagc |
695 |
Q |
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| T |
23043699 |
ttttccctataccaaaagggtcaacaagcatatcaggtcgtcttggcttccaatcaagcatcatccactgcttctcagcagc |
23043618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 98; Significance: 7e-48; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 285 - 446
Target Start/End: Complemental strand, 46402269 - 46402109
Alignment:
| Q |
285 |
gactaaccacgtcggataacaatcaaccacaacctgcatccgagtaacaacccatatcaagttctttttgcacatttctggcgtagaaccaaagccatca |
384 |
Q |
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|||| ||||||| ||||||| |||||| ||||| |||||||| | ||| |||||||| ||||| |||||||||||||| |||||||||||||||||||| |
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| T |
46402269 |
gacttaccacgtaggataacgatcaacgacaacttgcatccgcgcaactacccatattaagttttttttgcacatttcaggcgtagaaccaaagccatcg |
46402170 |
T |
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| Q |
385 |
ccaagaagcccagcagtcttaacatgattaagtgcagtttcctgttatcaaaacaaataatt |
446 |
Q |
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| T |
46402169 |
ccaagaagccccgcagttttaacatgattaagtgcagtttcctgttatc-aaacaaataatt |
46402109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 506 - 692
Target Start/End: Complemental strand, 46401984 - 46401798
Alignment:
| Q |
506 |
atacctgcaaatgattcattaacgtctctatagacgcagttttatccgcacctatttcgtacgatctaatcgaaaagttttggcgaaacacaagaccatc |
605 |
Q |
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||||||||||||||||||||| || ||||||||||| ||| ||||||||| ||||| |||||||| || |||||||||| | |||||||||||||| |
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| T |
46401984 |
atacctgcaaatgattcattattgtatctatagacgccgttcgatccgcaccaatttcatacgatctgatagaaaagttttcactgaacacaagaccatc |
46401885 |
T |
|
| Q |
606 |
ttgaacaattttccctataccaaaagggtcaacaagcatatcaggtcgtcttggcttccaatcaagcatcatccactgcttctcagc |
692 |
Q |
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||||||||||| ||||||||||||||||||| ||||| |||| ||||||||||||||||| |||||||||||||| || ||||| |
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| T |
46401884 |
ctgaacaattttgcctataccaaaagggtcaatcagcatgtcagaccgtcttggcttccaatcgagcatcatccactgtttttcagc |
46401798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 93; Significance: 6e-45; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 267 - 451
Target Start/End: Complemental strand, 32241695 - 32241511
Alignment:
| Q |
267 |
acaaatcaaaaaggttaagactaaccacgtcggataacaatcaaccacaacctgcatccgagtaacaacccatatcaagttctttttgcacatttctggc |
366 |
Q |
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|||||| |||||||| | |||||||| || ||||||| ||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||| |
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| T |
32241695 |
acaaataaaaaaggtgtaaactaaccatgttggataacgatcaaccacaatctgcatccgaataacaacccatatctggttctttttgcacatttctggc |
32241596 |
T |
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| Q |
367 |
gtagaaccaaagccatcaccaagaagcccagcagtcttaacatgattaagtgcagtttcctgttatcaaaacaaataattaagat |
451 |
Q |
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| T |
32241595 |
attgaaccaaagccataacaaataagtcaaacagtctcaacatgataaagtgcagtttcctgttatcaaagcaaataactaagat |
32241511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 453 - 527
Target Start/End: Complemental strand, 32241400 - 32241324
Alignment:
| Q |
453 |
ccacaacaaatttgttacataaagtataaaatcaaaatctcacttgtacgag--aatacctgcaaatgattcattaa |
527 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||| |||| ||| |||||||||||||||||||||| |
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| T |
32241400 |
ccacaacaaatttgttacataaagtatgaaatcaaaatctcacctgtatgagcatatacctgcaaatgattcattaa |
32241324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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