View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4287_low_3 (Length: 497)
Name: NF4287_low_3
Description: NF4287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4287_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 12 - 478
Target Start/End: Complemental strand, 47126882 - 47126412
Alignment:
| Q |
12 |
atgaacacaatacacaaggattttattttctttatatgcacatcgagaaatttttagagaatacta---aatgtcattatatttttctaaaatatttctt |
108 |
Q |
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| T |
47126882 |
atgaacacaatacacaatgattttattttctttatatgcacatcgataaattttaagagaatactactaaatgtcattaaatttttctaaaatatttctt |
47126783 |
T |
|
| Q |
109 |
atcatttgataaagttatacgaccatattagtagaatttgagctcaaatcattcaatgtcgttggtgtagtaacgtgaattttactttatagtagagata |
208 |
Q |
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| T |
47126782 |
atcatttgataaagttatacgaccatattagtagaatttgagctcaaatcattcaatgtcgttggtgtagtaacgtgaattttactttatagtagagata |
47126683 |
T |
|
| Q |
209 |
tgttttaacacaatataaggtaaagtttaactggatccttataaccatgtcatgacgcgcttcaagatatgtatctaacaaaggat-nnnnnnntgtgta |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| |
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| T |
47126682 |
tgttttaacacaatataaggtaaagtttaactggatccttataactatgtcatgacacgcttcaagatatgtatctaacaaaggataaaaaaaatgtgta |
47126583 |
T |
|
| Q |
308 |
ccaatttactgaagaatgatagctccataaaaacgaaagaccttggatcaaacattactatacatgttagaattatagaggtatatgccaagcatcccaa |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47126582 |
ccaatttactgaagaatgatagctccataaaaacgaaagaccttggatcaaacattactatacatgttagaattatagaggtatatgccaagcatcccaa |
47126483 |
T |
|
| Q |
408 |
cttcatgagggnnnnnnncttcaataacttaacataaatcaactcatatggagaacaattaacgctttata |
478 |
Q |
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||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
47126482 |
ctttatgagggtttttttcttcaataacttaacataaatcaactcatatgcagaacaattaacgctttata |
47126412 |
T |
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