View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4287_low_6 (Length: 385)

Name: NF4287_low_6
Description: NF4287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4287_low_6
NF4287_low_6
[»] chr1 (4 HSPs)
chr1 (45-366)||(35474869-35475190)
chr1 (250-366)||(35226015-35226130)
chr1 (242-354)||(35219858-35219968)
chr1 (14-51)||(35476060-35476097)


Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 45 - 366
Target Start/End: Complemental strand, 35475190 - 35474869
Alignment:
Q  45 tgttttagtattcagtctcaaatttaactataaacctgaatctgaatgtcaataacagcaatgatgatccaccgtctgattattctctttatagacagtt 144  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35475190 tgttatagtattcagtctcaaagttaactataaacctgaatctgaacgtcaataacagcaatgatgatccaccgtctgattattctctttatagacagtt 35475091  T
Q  145 gataaattgttagaatattattatacttgacatattttagagctgacattagttatgctgtcaacaaaatatgtctgtatgtatgcagaccttgtaatcc 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35475090 gataaattgttagaatattattatacttgacatattttagagctgacattagttatgctgtcaacaaaatatgtctgtatgtatgcagaccttgtaatcc 35474991  T
Q  245 tcttgatatttgaaaggcacacctgactaggtaggatctcatattttctgaaacttcatccttacagcaacacttgcaagcctatgcaagctgaataggc 344  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  35474990 tcttgatatttgaaaggcacacctgactaggtaggatctcatattttctgaaacttcatccttacagcaacacttgcaagcctacgcaagctgaataggc 35474891  T
Q  345 cacatgtgttcgcacacctgca 366  Q
    ||||||||||||||||||||||    
T  35474890 cacatgtgttcgcacacctgca 35474869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 250 - 366
Target Start/End: Complemental strand, 35226130 - 35226015
Alignment:
Q  250 atatttgaaaggcacacctgactaggtaggatctcatattttctgaaacttcatccttacagcaac-acttgcaagcctatgcaa--gctgaataggcca 346  Q
    |||||||||||||||||||||||||||    |||||||| |||||||| ||| | ||||||| ||| |||||||||||||||||   |||||||||||||    
T  35226130 atatttgaaaggcacacctgactaggt----tctcatatcttctgaaatttctttcttacagtaaccacttgcaagcctatgcagacgctgaataggcca 35226035  T
Q  347 catgtgttcgcacacctgca 366  Q
    |||||||| |||||||||||    
T  35226034 catgtgttggcacacctgca 35226015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 242 - 354
Target Start/End: Complemental strand, 35219968 - 35219858
Alignment:
Q  242 tcctcttgatatttgaaaggcacacctgactaggtaggatctcatattttctgaaacttcatccttacagcaacacttgcaagcctatgc--aagctgaa 339  Q
    |||||||||||||| || |||| || |||||||||    ||||||||||||||| |||||||| |||||| |||||||||||| | || |  ||||||||    
T  35219968 tcctcttgatattttaacggcaaacttgactaggt----tctcatattttctgagacttcatcgttacagtaacacttgcaagtccatacagaagctgaa 35219873  T
Q  340 taggccacatgtgtt 354  Q
    |||||| ||||||||    
T  35219872 taggcctcatgtgtt 35219858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 35476097 - 35476060
Alignment:
Q  14 atatacttgatgcaatatttatttgctgccatgtttta 51  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  35476097 atatacttgatacaatatttatttgctgccatgtttta 35476060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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