View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4287_low_7 (Length: 381)
Name: NF4287_low_7
Description: NF4287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4287_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 28 - 373
Target Start/End: Original strand, 44429974 - 44430319
Alignment:
| Q |
28 |
tactactactacatagtggcactctctacctctcattgtacctcaatttttatcttggtgagcctggtatatatgccaggtccactctttcactttgcaa |
127 |
Q |
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| T |
44429974 |
tactactactacatagtggcactctctacctctcattgtacctcaatttttatcttggtgagcctggtatatatgccaggtccactctttcactttgcaa |
44430073 |
T |
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| Q |
128 |
taaattacatatttgatattactctactgtgagaatcaaagctgcaaatatctctgcacaacttggagacagaaacaggattgcaatatgtataatatat |
227 |
Q |
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| T |
44430074 |
taaattacatatttgttattactctactgtgagaatcaaagctgcaaatatctctgcacaacttggagacagaaacaggattgcaatatgtataatatat |
44430173 |
T |
|
| Q |
228 |
aattataaaccatagaaaagaagttggagcgtgggatatattcatgttggagtccactatagaaagccctatcttactgacaaaataaaagatatgcaga |
327 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44430174 |
aattataaaccatagaaaagaagttggagcgtgggatatattcatgttggagtccactatagaaagccctatcttactgacaaaataaaagatatgcaga |
44430273 |
T |
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| Q |
328 |
atttatattaataatttagacataagataatttcattgtgatgatg |
373 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44430274 |
atttatattaataatttagacataagataatttcattgtgatgatg |
44430319 |
T |
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