View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4287_low_8 (Length: 360)
Name: NF4287_low_8
Description: NF4287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4287_low_8 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 11 - 360
Target Start/End: Original strand, 14241720 - 14242069
Alignment:
| Q |
11 |
catagggatgttgtgagtgacagatacacaagtggcaataggtagagcagtataagggacaccacagacaaggtcgaatttagtgttggagacagaggaa |
110 |
Q |
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| T |
14241720 |
catagggatgttgtgagtgacagatacacaagtggcaataggtagagcagtataagggacaccacagacaaggtcgaatttagtgttggagacagaggaa |
14241819 |
T |
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| Q |
111 |
atcatagtttgagaaatttgtcggaggacagaagggtaagatataataaggcggagatctatataaattggtgaggagatgccggatttaagcttgaagt |
210 |
Q |
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| T |
14241820 |
atcatagtttgagaaatttgtcggaggacagaagggtaagatataataaggcggaggtctatataaattggtgaggagatgccggatttaagcttgaagt |
14241919 |
T |
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| Q |
211 |
taccaaatttgacagctgagatttcatggagttgaagaactaaagactccattgatgtgcctttctcagtgtgcttaaaggattatctaaaaccttcaga |
310 |
Q |
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| T |
14241920 |
ttccaaatttgacagctgagatttcatggagtttaagaactaaagactccattgatgtgcctttctcagtgtgcttaaaggattatctaaaaccttcaga |
14242019 |
T |
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| Q |
311 |
acaatcagtgtcattcagtgagtaaaatcatcaataaaaataacgcatac |
360 |
Q |
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| T |
14242020 |
acaatcagtgtcattcagtgagtaaaatcatcaataaaaataacgcatac |
14242069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 39 - 250
Target Start/End: Complemental strand, 5032568 - 5032357
Alignment:
| Q |
39 |
caagtggcaataggtagagcagtataagggacaccacagacaaggtcgaatttagtgttggagacagaggaaatcatagtttgagaaatttgtcggagga |
138 |
Q |
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| T |
5032568 |
caagtggcaatgggtagggcagtgtaagggacaccacataccagatcaaatgaggtggaagagactgatgaaattaaggtctgagagatttgctggagga |
5032469 |
T |
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| Q |
139 |
cagaagggtaagatataataaggcggagatctatataaattggtgaggagatgccggatttaagcttgaagttaccaaatttgacagctgagatttcatg |
238 |
Q |
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| T |
5032468 |
gagaaggataagaaattatgagacggaggtcaatgtagattggtgaggagatgccagatttgagcttgaagttgccgaatttcacagctgatatctcatg |
5032369 |
T |
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| Q |
239 |
gagttgaagaac |
250 |
Q |
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| T |
5032368 |
gagttgaagaac |
5032357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 135 - 250
Target Start/End: Complemental strand, 7990652 - 7990537
Alignment:
| Q |
135 |
aggacagaagggtaagatataataaggcggagatctatataaattggtgaggagatgccggatttaagcttgaagttaccaaatttgacagctgagattt |
234 |
Q |
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| T |
7990652 |
aggagagaaggataagatatgatgagacggaggtcaatgtagatcggtgaggtgatgccagatttgagcttgaagttgccgaatttcacagctgatatct |
7990553 |
T |
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| Q |
235 |
catggagttgaagaac |
250 |
Q |
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| T |
7990552 |
catggagttgaagaac |
7990537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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