View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4287_low_9 (Length: 345)
Name: NF4287_low_9
Description: NF4287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4287_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 14 - 326
Target Start/End: Original strand, 1253607 - 1253915
Alignment:
| Q |
14 |
catcaactaaattgaattcaatatcaccattcttaaagccataaggaggtagtagagttggtgcagctgaagtcccaatggctatatcagacaattttgc |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
1253607 |
catcaactaaattgaattcaatatcaccattcttaaagccataaggaggtagtaaggttggtgcagctgaagtcccaatggctatatccgacaattttgc |
1253706 |
T |
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| Q |
114 |
atctaggtctggaactttctccacctgcattaatccatgatgagcaaagtttcacaattaacacccacgagttagagtattctactcaagcttagaaaaa |
213 |
Q |
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| T |
1253707 |
atctaggtctggaactttctccacctgc---aatccatgatgagaaaagtttcacaattaacacccacgagttagagtattctactcaagcttagaaaaa |
1253803 |
T |
|
| Q |
214 |
acaaacattaatggtaaataaaaagttaagattatacatatatgtaaatttaatatgcggaccttgaagcttgaaaaaataactggtttgactttcttga |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
1253804 |
acaaacattaatggtaaataaaaagttaagattatacatatatgtaaa-ttaatatgcggaccttgaagcttgaaaaaacaactggtttgactttcttga |
1253902 |
T |
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| Q |
314 |
tatcgtaggttgg |
326 |
Q |
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||||||||||||| |
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| T |
1253903 |
tatcgtaggttgg |
1253915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 14 - 326
Target Start/End: Original strand, 1242908 - 1243216
Alignment:
| Q |
14 |
catcaactaaattgaattcaatatcaccattcttaaagccataaggaggtagtagagttggtgcagctgaagtcccaatggctatatcagacaattttgc |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
1242908 |
catcaactaaattgaattcaatatcaccattcttaaagccataaggaggtagtaaggttggtgcagctgaagtcccaatggctatatccgacaattttgc |
1243007 |
T |
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| Q |
114 |
atctaggtctggaactttctccacctgcattaatccatgatgagcaaagtttcacaattaacacccacgagttagagtattctactcaagcttagaaaaa |
213 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1243008 |
atctaggtctggaactttctccacctgc---aatccatgatgagaaaagtttcacaattaacacccacgagttagagtattctactcaagcttagaaaaa |
1243104 |
T |
|
| Q |
214 |
acaaacattaatggtaaataaaaagttaagattatacatatatgtaaatttaatatgcggaccttgaagcttgaaaaaataactggtttgactttcttga |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||||||||| |
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| T |
1243105 |
acaaacattaatggtaaataaaaagttaagattatacatatatgtaaa-ttaatatgcggaccttgaagcttgaaaaaacaaatggtttgactttcttga |
1243203 |
T |
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| Q |
314 |
tatcgtaggttgg |
326 |
Q |
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||||||||||||| |
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| T |
1243204 |
tatcgtaggttgg |
1243216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 14 - 143
Target Start/End: Original strand, 1196702 - 1196831
Alignment:
| Q |
14 |
catcaactaaattgaattcaatatcaccattcttaaagccataaggaggtagtagagttggtgcagctgaagtcccaatggctatatcagacaattttgc |
113 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||| ||||| ||| | ||||| ||||||||||||||||||||||||||||||||||| |||| |||||| |
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| T |
1196702 |
catcaattaaattgaattcattatcaccattcgtaaagttataggctggtagaagagttggtgcagctgaagtcccaatggctatatccgacagttttgc |
1196801 |
T |
|
| Q |
114 |
atctaggtctggaactttctccacctgcat |
143 |
Q |
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|| || | |||||||||| ||||||||| |
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| T |
1196802 |
atttaagctaggaactttcttcacctgcat |
1196831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 61 - 120
Target Start/End: Original strand, 1277379 - 1277438
Alignment:
| Q |
61 |
ggtagtagagttggtgcagctgaagtcccaatggctatatcagacaattttgcatctagg |
120 |
Q |
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||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
1277379 |
ggtagaagagttggtgcagctgaagtcccaatggctatatccgacaattttgcatctagg |
1277438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 117
Target Start/End: Complemental strand, 1300290 - 1300242
Alignment:
| Q |
69 |
agttggtgcagctgaagtcccaatggctatatcagacaattttgcatct |
117 |
Q |
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|||||||||||||||||| |||||| |||||| || |||||||||||| |
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| T |
1300290 |
agttggtgcagctgaagttccaatgcatatatctgataattttgcatct |
1300242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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