View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4288_high_2 (Length: 584)
Name: NF4288_high_2
Description: NF4288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4288_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 332; Significance: 0; HSPs: 14)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 124 - 534
Target Start/End: Original strand, 14741965 - 14742376
Alignment:
| Q |
124 |
cagagtattaaaatcacacaggcagtaagcctttaatatataaacagcaaaagggt-acatgtttatattgccattttctatcatttctggagtcgaaaa |
222 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14741965 |
cagagtattaaaatcacacatgcaataagcctttaatttataaacagcaaaagggttacatgtttatattgccattttctatcatttctggagtcgaaaa |
14742064 |
T |
|
| Q |
223 |
tacaataattgaaacacttcccttttgcaaaatttattccttaaagggatccaaatctgcacctcaactccacaaagaaattcaattaaaaataggatgt |
322 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
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| T |
14742065 |
tacaataattgaaacacttcgcttttgcaaaatttattccttaaagggatccaaatctgcacctcaactccataaagaaactcaattaaaaataggatgt |
14742164 |
T |
|
| Q |
323 |
gtgcataccagtagatccactgcttggaacaactgctccagatgtgccttcctgatgctgttttacttcctgcttgaatgacataagtgaaggttaattt |
422 |
Q |
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||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
14742165 |
gtgcataccagtagatctactgcttggatcaaatgctccagatgtgccttcctgatgctgctttacttcctgcttgaatgacataagtgaaggttaattt |
14742264 |
T |
|
| Q |
423 |
gtataattggcatatttatggcttggttgtggcggatccaatgtacaaaacatgatgcaagaattctactaaagtttgtgcctaagataaggatgttatt |
522 |
Q |
| |
|
||||||| |||| || |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
14742265 |
gtataatcggcagatccatggcttggttgcggcagatccaatgtacaaaacatgatgcaagaattctactaaagtttgtgcctcagataaggatgttatc |
14742364 |
T |
|
| Q |
523 |
gattttagctat |
534 |
Q |
| |
|
|||||||||||| |
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|
| T |
14742365 |
gattttagctat |
14742376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 153 - 395
Target Start/End: Complemental strand, 15010650 - 15010407
Alignment:
| Q |
153 |
cctttaatatataaacagcaaaagggtacatgtttatattgccattttctatcatttctggagtcgaaaatacaat-aattgaaacacttccctttt-gc |
250 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||| || |
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|
| T |
15010650 |
cctttaagctataaacaccaaaagggtacatgtttatattgccattttctatcatttctggagtcgaaaa-acaagcaattgaaacacttcactttttgc |
15010552 |
T |
|
| Q |
251 |
aaaatttattccttaaagggatccaaatctgcacctcaactccacaaagaaattcaattaaaaataggatgtgtgcataccagtagatccactgcttgga |
350 |
Q |
| |
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||| ||| |||||| |||||||| || ||||||||||||||||||||| || ||||||||||| | ||||| |||||||||||||| |||||||||| |
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| T |
15010551 |
aaattttcttcctttaagggatcaaattctgcacctcaactccacaaacaaggtcaattaaaaacatgatgtacacataccagtagatctactgcttgga |
15010452 |
T |
|
| Q |
351 |
acaactgctccagatgtgccttcctgatgctgttttacttcctgc |
395 |
Q |
| |
|
||||| |||| ||||||||||||||||||||| | |||||||||| |
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|
| T |
15010451 |
acaacagctctagatgtgccttcctgatgctgctctacttcctgc |
15010407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 182 - 395
Target Start/End: Complemental strand, 14290604 - 14290391
Alignment:
| Q |
182 |
atgtttatattgccattttctatcatttctggagtcgaaaatacaa-taattgaaacacttcccttttgcaaaatttattccttaaagggatccaaatct |
280 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| |||| |||||| ||||||||||||||||||| ||| ||||| |||||||||||||||| |
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|
| T |
14290604 |
atgtttatattgccattttctatcatttcaggagtcgaaaa-acaagtaattggaacacttcccttttgcaaattttcttcctcaaagggatccaaatct |
14290506 |
T |
|
| Q |
281 |
gcacctcaactccacaaagaaattcaattaaaaataggatgtgtgcataccagtagatccactgcttggaacaactgctccagatgtgccttcctgatgc |
380 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| |||||||| |||||||| |||||| ||||||||||| |||| ||||||||||||||||| | |
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|
| T |
14290505 |
gcacctcaactccacaaagaaaatcaattaaaaacaggatgtggaaataccagtggatccagtgcttggaacattagctctagatgtgccttcctgatcc |
14290406 |
T |
|
| Q |
381 |
tgttttacttcctgc |
395 |
Q |
| |
|
|| | |||||||||| |
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|
| T |
14290405 |
tgctctacttcctgc |
14290391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 153 - 395
Target Start/End: Complemental strand, 15053579 - 15053333
Alignment:
| Q |
153 |
cctttaatatataaacagcaaaagggtacatgtttatattgccattttctatcatttctggagtcgaaaatacaa-taattgaaacacttcc-----ctt |
246 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||| |||| |||| ||||||||| |||| ||| |
|
|
| T |
15053579 |
cctttaagttataaacagcaaaatggtacatgtttatattgccattttcaatcatttctagagtcaaaaa-acaagtaattgaaatacttatactttctt |
15053481 |
T |
|
| Q |
247 |
ttgcaaaatttattccttaaagggatccaaatctgcacctcaactccacaaagaaattcaattaaaaataggatgtgtgcataccagtagatccactgct |
346 |
Q |
| |
|
||||||| ||| || |||||||||| ||||||||||||||| || | ||| ||||| ||||||||||| |||||||| ||||||||||||| | |||| |
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|
| T |
15053480 |
ttgcaaattttctttcttaaagggacccaaatctgcacctcgac-caacatagaaaatcaattaaaaacaggatgtgcaaataccagtagatcaattgct |
15053382 |
T |
|
| Q |
347 |
tggaacaactgctccagatgtgccttcctgatgctgttttacttcctgc |
395 |
Q |
| |
|
||||||||| |||| |||||||||||| ||||| || | |||||||||| |
|
|
| T |
15053381 |
tggaacaacagctctagatgtgccttcttgatgttgctctacttcctgc |
15053333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 121 - 252
Target Start/End: Complemental strand, 14283354 - 14283223
Alignment:
| Q |
121 |
caacagagtattaaaatcacacaggcagtaagcctttaatatataaacagcaaaagggtacatgtttatattgccattttctatcatttctggagtcgaa |
220 |
Q |
| |
|
|||||||| |||| ||||||||| |||| ||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
14283354 |
caacagagcattataatcacacatacagtgtacctttaagttatgaacagcaaaagggtacatgtttatattgccattttctagaatttctggagtcgaa |
14283255 |
T |
|
| Q |
221 |
aatacaa-taattgaaacacttcccttttgcaa |
252 |
Q |
| |
|
| |||| ||||||||||||||||||||||||| |
|
|
| T |
14283254 |
ta-acaagtaattgaaacacttcccttttgcaa |
14283223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 24 - 95
Target Start/End: Original strand, 14741890 - 14741961
Alignment:
| Q |
24 |
gttcagttatttcgttcaagattgataatcaactccagttagaaatatggcaaagtaaaagactcatactac |
95 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |
|
|
| T |
14741890 |
gttcagttatattgttcaagattgataatcaactccagctagaaacatggcaaagtaaaagactcatactac |
14741961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 269 - 378
Target Start/End: Original strand, 15056144 - 15056253
Alignment:
| Q |
269 |
ggatccaaatctgcacctcaactccacaaagaaattcaattaaaaataggatgtgtgcataccagtagatccactgcttggaacaactgctccagatgtg |
368 |
Q |
| |
|
|||||||||||||| ||| |||| |||| ||||| |||||||||| ||||||| |||||||||||||| || |||||||||||| |||| ||||||| |
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|
| T |
15056144 |
ggatccaaatctgcgccttaacttcacagagaaaatcaattaaaagcaggatgtacacataccagtagatctacggcttggaacaacagctctagatgtg |
15056243 |
T |
|
| Q |
369 |
ccttcctgat |
378 |
Q |
| |
|
|||||||||| |
|
|
| T |
15056244 |
ccttcctgat |
15056253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 31 - 95
Target Start/End: Complemental strand, 15053681 - 15053617
Alignment:
| Q |
31 |
tatttcgttcaagattgataatcaactccagttagaaatatggcaaagtaaaagactcatactac |
95 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
15053681 |
tattttgttcaagattgataatcaactccagttagaaacatggcacagtaaaagactcatactac |
15053617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 37 - 98
Target Start/End: Complemental strand, 15010746 - 15010685
Alignment:
| Q |
37 |
gttcaagattgataatcaactccagttagaaatatggcaaagtaaaagactcatactaccag |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| |||||| ||||||||||||||| |
|
|
| T |
15010746 |
gttcaagattgataatcaactccagttagaaacatggcacagtaaacgactcatactaccag |
15010685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 259 - 348
Target Start/End: Complemental strand, 14283196 - 14283104
Alignment:
| Q |
259 |
ttccttaaagggatccaaatctgcacctcaactccacaaagaaattcaatt---aaaaataggatgtgtgcataccagtagatccactgcttg |
348 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||| |||||||| ||||||||||||||| |||||| |
|
|
| T |
14283196 |
ttccttaaagggatccaaatctgcacctcaacgccacaaagaaaagcaattaaaaaaaacaggatgtgcaaataccagtagatccagtgcttg |
14283104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 467 - 535
Target Start/End: Complemental strand, 15010302 - 15010234
Alignment:
| Q |
467 |
acaaaacatgatgcaagaattctactaaagtttgtgcctaagataaggatgttattgattttagctata |
535 |
Q |
| |
|
|||||||| || |||| ||||||||||||||||| |||| |||||||||| |||||||||||||||||| |
|
|
| T |
15010302 |
acaaaacaagaagcaacaattctactaaagtttgagccttagataaggatattattgattttagctata |
15010234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 28 - 90
Target Start/End: Complemental strand, 14283417 - 14283356
Alignment:
| Q |
28 |
agttatttcgttcaagattgataatcaactccagttagaaatatggcaaagtaaaagactcat |
90 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
14283417 |
agttattt-gttcaagatcgataatcaactccagttagaaaaatggcacagtaaaagactcat |
14283356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 467 - 528
Target Start/End: Original strand, 15056389 - 15056449
Alignment:
| Q |
467 |
acaaaacatgatgcaagaattctactaaagtttgtgcctaagataaggatgttattgatttt |
528 |
Q |
| |
|
|||||||| ||||||||| ||||||||| |||||||||| ||||||| || ||||||||||| |
|
|
| T |
15056389 |
acaaaacaagatgcaagagttctactaatgtttgtgcct-agataagtatattattgatttt |
15056449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 14290699 - 14290660
Alignment:
| Q |
28 |
agttatttcgttcaagattgataatcaactccagttagaaa |
68 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
14290699 |
agttattt-gttcaagattgataatcaactccagttagaaa |
14290660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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