View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4288_high_6 (Length: 354)
Name: NF4288_high_6
Description: NF4288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4288_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 15 - 338
Target Start/End: Complemental strand, 37892674 - 37892344
Alignment:
| Q |
15 |
aataaatcaagagagttaataaggtaatatgatcaatatcatgttcatgcgtcattaaattaaatcataaattaaaacaagatagaactattatatacca |
114 |
Q |
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| T |
37892674 |
aataaatcaagagaggtaataaggtgatatgatcaatatcatgttcatgcgtcattaaattaaattataaattaaaacaagatagaactattatatacca |
37892575 |
T |
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| Q |
115 |
tcattatcgtatcttgactaccaaacaagttctaatggtaagaggtttgagctaccaaactttgacatctgtaagaataaagaaatcgttccgtctaaac |
214 |
Q |
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| T |
37892574 |
tcattatcttatcttgactaccaaacaagttctaatggtaagaggtttgagctaccaaactttgacatctgtaagaataaagaaatcgtccggtctaaac |
37892475 |
T |
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| Q |
215 |
cct-------aaactctaaaaaacctaaccaaacataatttgaactacaatttgaaggtaagtcctgtttctaggagtttacttccacaacagtatgtat |
307 |
Q |
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| T |
37892474 |
cctaaaccctaaactctaaaaaaactaaccaaacataatttgaactacaatttgaaggtaagtcctgtttctaggagtttacttccacaacagtatgtat |
37892375 |
T |
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| Q |
308 |
ggcataagtggataccatttcagggaaaaat |
338 |
Q |
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| T |
37892374 |
ggcataagtggataccatttcagggaaaaat |
37892344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 257 - 338
Target Start/End: Complemental strand, 37187574 - 37187493
Alignment:
| Q |
257 |
atttgaaggtaagtcctgtttctaggagtttacttccacaacagtatgtatggcataagtggataccatttcagggaaaaat |
338 |
Q |
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| T |
37187574 |
atttgaaggtaagtcctgtttctaggagtttacttccataacagtatgtatggcataagtggataccatttcagggaaaaat |
37187493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 73 - 184
Target Start/End: Complemental strand, 37187689 - 37187575
Alignment:
| Q |
73 |
attaaatcataaattaaaacaagatagaactattatatacca---tcattatcgtatcttgactaccaaacaagttctaatggtaagaggtttgagctac |
169 |
Q |
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||||||| ||||| ||||||| |||||||||||||||||| | | |||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37187689 |
attaaattataaactaaaacatgatagaactattatatacaactataattatcttatcttgactaccaaacaagttctaatggtaagaggtttgagctgt |
37187590 |
T |
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| Q |
170 |
caaactttgacatct |
184 |
Q |
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| T |
37187589 |
ccaactttgacatct |
37187575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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