View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4288_low_1 (Length: 693)
Name: NF4288_low_1
Description: NF4288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4288_low_1 |
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| [»] scaffold0099 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 476; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 11 - 486
Target Start/End: Original strand, 24893508 - 24893983
Alignment:
| Q |
11 |
catcatcaaactgcgaagctcgatgcactaaagcctccacatacaagatttgaaaaggggtgtaatgttgtggggtgtaatgaaactcattttagagttt |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24893508 |
catcatcaaactgcgaagctcgatgcactaaagcctccacatacaagatttgaaaaggggtgtaatgttgtggggtgtaatgaaactcattttagagttt |
24893607 |
T |
|
| Q |
111 |
ttgatgagtggtaagtagaagtagaaggtgaaagtaattttctgttaatttaacatgctatgaaaattcaaatgatagaaacgagaaaagacacaagtaa |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24893608 |
ttgatgagtggtaagtagaagtagaaggtgaaagtaattttctgttaatttaacatgctatgaaaattcaaatgatagaaacgagaaaagacacaagtaa |
24893707 |
T |
|
| Q |
211 |
agagggcaacacttactcagaaattccttcatatacagttccaaatgaaccgcggcccaaaagctcacccttttgccaactcccgggagtaataagtgac |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24893708 |
agagggcaacacttactcagaaattccttcatatacagttccaaatgaaccgcggcccaaaagctcacccttttgccaactcccgggagtaataagtgac |
24893807 |
T |
|
| Q |
311 |
ttcaatctcacattagaaaatatactattcgacctagtatcccccctttggtttgccacttcaccaacttccccttccgaagaaagatccatcaaaagat |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24893808 |
ttcaatctcacattagaaaatatactattcgacctagtatcccccctttggtttgccacttcaccaacttccccttccgaagaaagatccatcaaaagat |
24893907 |
T |
|
| Q |
411 |
cccatgttgagcatgttgagctagaaatagaattcctcaatagatcccacgatgagcatgtcgagctagtctctcc |
486 |
Q |
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| T |
24893908 |
cccatgttgagcatgttgagctagaaatagaattcctcaatagatcccacgatgagcatgtcgagctagtctctcc |
24893983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 220 - 352
Target Start/End: Original strand, 24922635 - 24922767
Alignment:
| Q |
220 |
cacttactcagaaattccttcatatacagttccaaatgaaccgcggcccaaaagctcacccttttgccaactcccgggagtaataagtgacttcaatctc |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| | | |||||||||| |
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| T |
24922635 |
cacttactcagaaattccttcatatacagttccaaatgaaccacggcccaaaagctcacccttttgccaactcccaggagtaattacaggcttcaatctc |
24922734 |
T |
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| Q |
320 |
acattagaaaatatactattcgacctagtatcc |
352 |
Q |
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| T |
24922735 |
acattaggagatatactattcgacctagtatcc |
24922767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 220 - 352
Target Start/End: Original strand, 24998725 - 24998857
Alignment:
| Q |
220 |
cacttactcagaaattccttcatatacagttccaaatgaaccgcggcccaaaagctcacccttttgccaactcccgggagtaataagtgacttcaatctc |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| | | |||||||||| |
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| T |
24998725 |
cacttactcagaaattccttcatatacagttccaaatgaaccacggcccaaaagctcacccttttgccaactcccaggagtaattacaggcttcaatctc |
24998824 |
T |
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| Q |
320 |
acattagaaaatatactattcgacctagtatcc |
352 |
Q |
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||||||| | ||||||||||||||||||||||| |
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| T |
24998825 |
acattaggagatatactattcgacctagtatcc |
24998857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 584 - 675
Target Start/End: Original strand, 24894081 - 24894172
Alignment:
| Q |
584 |
ggagctaaatccctcagtatatcccacgtcgaacacatgtcatccacagcagaaaccacaacccctggtggcggcttaagcatagatggact |
675 |
Q |
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||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
24894081 |
ggagctaaatctctcagtatatcccacttcgaacacatgtcatccacagcagaaaccacaacccctggtggcggcttaagcatagacggact |
24894172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 222 - 383
Target Start/End: Original strand, 24905545 - 24905703
Alignment:
| Q |
222 |
cttactcagaaattccttcatatacagttccaaatgaaccgcggcccaaaagctcacccttttgccaactcccgggagtaataagtgacttcaatctcac |
321 |
Q |
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|||||| ||||||||||||||||||| |||||| ||||| | |||||||| |||||||||| ||||||||| |||||||||| || | ||||||||| |
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| T |
24905545 |
cttactgagaaattccttcatatacaaatccaaacgaaccactacccaaaagttcacccttttcccaactcccaggagtaataactggcatcaatctcag |
24905644 |
T |
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| Q |
322 |
attagaaaatatactattcgacctagtatcccccctttggtttgccacttcaccaacttccc |
383 |
Q |
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|||||||||| ||| |||||| | ||||| ||||||||||| |||||||||||||||||| |
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| T |
24905645 |
attagaaaatgtacaattcgagcaagtat---ccctttggtttcccacttcaccaacttccc |
24905703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 584 - 666
Target Start/End: Original strand, 24999047 - 24999129
Alignment:
| Q |
584 |
ggagctaaatccctcagtatatcccacgtcgaacacatgtcatccacagcagaaaccacaacccctggtggcggcttaagcat |
666 |
Q |
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||||| ||||||||||| ||||||||||| |||||| ||||||||||| |||||||| ||||||||| |||||||||||||| |
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| T |
24999047 |
ggagcaaaatccctcagaatatcccacgttgaacacgtgtcatccacaacagaaacccgaacccctggcggcggcttaagcat |
24999129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 226
Target Start/End: Original strand, 24904739 - 24904784
Alignment:
| Q |
181 |
aatgatagaaacgagaaaagacacaagtaaagagggcaacacttac |
226 |
Q |
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|||| ||||||||| | |||| |||||||||||||||||||||||| |
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| T |
24904739 |
aatggtagaaacgaaataagatacaagtaaagagggcaacacttac |
24904784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0099 (Bit Score: 61; Significance: 8e-26; HSPs: 1)
Name: scaffold0099
Description:
Target: scaffold0099; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 220 - 352
Target Start/End: Original strand, 35695 - 35834
Alignment:
| Q |
220 |
cacttactcagaaattcctt-catatacagttccaaatgaaccgcggccc-aaaagctcaccc-ttttgccaactcccgggagtaa--taagtgacttc- |
313 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||| |||||| |||||||||||| |||||||||||||| ||||||| || |||||| |
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| T |
35695 |
cacttactcagaaattccttacatatacagttccaaatgaaccacggcccaaaaagctcaccctttttgccaactcccaggagtaatttacaggacttca |
35794 |
T |
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| Q |
314 |
aatctcacatt-agaaaatatactattcgacctagtatcc |
352 |
Q |
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||||||||||| || | ||||||||||||||||||||||| |
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| T |
35795 |
aatctcacattaaggagatatactattcgacctagtatcc |
35834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 219 - 288
Target Start/End: Original strand, 33023027 - 33023096
Alignment:
| Q |
219 |
acacttactcagaaattccttcatatacagttccaaatgaaccgcggcccaaaagctcacccttttgcca |
288 |
Q |
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||||||||||||||||||||||||| |||| |||||||||||| | ||||||| ||||||||||||| |
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| T |
33023027 |
acacttactcagaaattccttcatagacagatccaaatgaaccaccccccaaaaagccacccttttgcca |
33023096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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