View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4288_low_13 (Length: 298)
Name: NF4288_low_13
Description: NF4288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4288_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 197 - 293
Target Start/End: Complemental strand, 36691420 - 36691324
Alignment:
| Q |
197 |
gtacctgaattttgtgatctttgaggaaaggatgatcaaaagctggttgctttgaaacaggtacacaatctataatatccccatctggactctgcaa |
293 |
Q |
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| T |
36691420 |
gtacctgaattttgtgatctttgaggaaaggatgatcaaaagctggttgctttgaaacaggtacacaatctataatatccccatctggactctgcaa |
36691324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 36691599 - 36691520
Alignment:
| Q |
18 |
agtacttgatttttgtttgttatcatccaacttgttttcctcaaaaagcccttcaggatggaaattaggtctcatctaat |
97 |
Q |
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| T |
36691599 |
agtacttgatttttctttgttatcatccaacttgttttcctcaaaaagcccttcaggatggaaattaggtctcatctaat |
36691520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 199 - 291
Target Start/End: Original strand, 26431470 - 26431562
Alignment:
| Q |
199 |
acctgaattttgtgatctttgaggaaaggatgatcaaaagctggttgctttgaaacaggtacacaatctataatatccccatctggactctgc |
291 |
Q |
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| T |
26431470 |
acctgaatcttgtgatctttgagttcagggtgatcaaaagctggttggtgtgaaacatgaacacagtcaataatatctccatcaggactctgc |
26431562 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 290
Target Start/End: Original strand, 30910418 - 30910481
Alignment:
| Q |
227 |
gatgatcaaaagctggttgctt-tgaaacaggtacacaatctataatatccccatctggactctg |
290 |
Q |
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| T |
30910418 |
gatgatcaaaagctggttgtttgtgagacaga-acacagtctataatatcgccatctggactctg |
30910481 |
T |
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