View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4288_low_14 (Length: 288)
Name: NF4288_low_14
Description: NF4288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4288_low_14 |
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| [»] scaffold1084 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 5 - 272
Target Start/End: Complemental strand, 2899503 - 2899235
Alignment:
| Q |
5 |
ttatacttcatagattcctcaaaacctgatgctttttcccagaagagaccttcccaagttggaaaatatgtgcctttgaataaagtgtgttcaagaattc |
104 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
2899503 |
ttatacttcatagattcctcaaaacctgatgctttttcccagaagagaccttcccaagttggaaaatatgttcctttgaataaagtgtgttcaagaattt |
2899404 |
T |
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| Q |
105 |
cttcaattcctccaagagcttgaataacatcagttcggtaattattcaagttccacaacttcccatcgtgcctctggtgtgtccaccagaagggattttg |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
2899403 |
gttcaattcctccaagagcttgaataacatcagttcggtaattattcaagttccacaacttcccatcatgcctctggtgtgtccaccagaagggattttg |
2899304 |
T |
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| Q |
205 |
ttttaaaatttgatactgcttgaagtct-aacgtaccctccatcctttatcataagccaaagtgtgtct |
272 |
Q |
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|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
2899303 |
ttttaaaacttgatactgcttgaagtctaaacgtaccctccatcctttatcataagccaaagtgtgtct |
2899235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 155; Significance: 3e-82; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 71 - 272
Target Start/End: Original strand, 44779388 - 44779590
Alignment:
| Q |
71 |
tatgtgcctttgaataaagtgtgttcaagaattccttcaattcctccaagagcttgaataacatcagttcggtaattattcaagttccacaacttcccat |
170 |
Q |
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| T |
44779388 |
tatgttcctttgaataatgtgtgttcaagaattccttcaactcccccaagggcttgaataacatcagttcggtaattattcaagttccacaacttcccat |
44779487 |
T |
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| Q |
171 |
cgtgcctctggtgtgtccaccagaagggattttgttttaaaatttgatactgcttgaagtct-aacgtaccctccatcctttatcataagccaaagtgtg |
269 |
Q |
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| T |
44779488 |
cgtgcctctggtgtgtccaccagaagggattttgttttagaacttgatattgcttgaagtctgtacgcaccctccatcctttatcataagccaaagtgtg |
44779587 |
T |
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| Q |
270 |
tct |
272 |
Q |
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||| |
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| T |
44779588 |
tct |
44779590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 71 - 272
Target Start/End: Original strand, 39876158 - 39876358
Alignment:
| Q |
71 |
tatgtgcctttgaataaagtgtgttcaagaattccttcaattcctccaagagcttgaataacatcagttcggtaattattcaagttccacaacttcccat |
170 |
Q |
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| T |
39876158 |
tatgttcctttgaataatgtgtgttcaagaattccttcaactcctccaagggcttgaataacatcagttcggtaattattcaaattccacaacttcccat |
39876257 |
T |
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| Q |
171 |
cgtgcctctggtgtgtccaccagaagggattttgttttaaaatttgatactgcttgaagtct-aacgtaccctccatcctttatcataagccaaagtgtg |
269 |
Q |
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|||||||||||||||||| |||||| ||| |||||||| || |||||| |||||||| ||| ||| |||||||||||||||||||||||||||| ||| |
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| T |
39876258 |
cgtgcctctggtgtgtcccccagaaagga--ttgttttagaacttgatattgcttgaaatctctacgcaccctccatcctttatcataagccaaagcgtg |
39876355 |
T |
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| Q |
270 |
tct |
272 |
Q |
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||| |
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| T |
39876356 |
tct |
39876358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 5 - 70
Target Start/End: Original strand, 44778486 - 44778551
Alignment:
| Q |
5 |
ttatacttcatagattcctcaaaacctgatgctttttcccagaagagaccttcccaagttggaaaa |
70 |
Q |
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| T |
44778486 |
ttatacttcatagattcctcaaaacctgatgccttttcccagaagagaccctcccaagttggaaaa |
44778551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 5 - 70
Target Start/End: Original strand, 39875338 - 39875403
Alignment:
| Q |
5 |
ttatacttcatagattcctcaaaacctgatgctttttcccagaagagaccttcccaagttggaaaa |
70 |
Q |
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| T |
39875338 |
ttatacttcatagattcctcgaaacctgatgccttttcccagaatagaccttcccaagttggaaaa |
39875403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1084 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: scaffold1084
Description:
Target: scaffold1084; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 94 - 155
Target Start/End: Complemental strand, 2717 - 2656
Alignment:
| Q |
94 |
ttcaagaattccttcaattcctccaagagcttgaataacatcagttcggtaattattcaagt |
155 |
Q |
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| T |
2717 |
ttcaagaattccttcaacacctccaagggcttgaataacatcagttctgtaattgttcaagt |
2656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1084; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 192 - 272
Target Start/End: Complemental strand, 2644 - 2562
Alignment:
| Q |
192 |
agaagggattttgtt-ttaaaatttgatactgcttgaagtctaac-gtaccctccatcctttatcataagccaaagtgtgtct |
272 |
Q |
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||||||||||||| | |||||| |||||||||||| |||||| | ||||||||||||||||||||||||||||||||||| |
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| T |
2644 |
agaagggattttggtgttaaaacttgatactgcttaaagtctgtgtgcaccctccatcctttatcataagccaaagtgtgtct |
2562 |
T |
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