View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4288_low_15 (Length: 287)
Name: NF4288_low_15
Description: NF4288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4288_low_15 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 8 - 287
Target Start/End: Complemental strand, 9405270 - 9404991
Alignment:
| Q |
8 |
gacatcatcaccaatgattctacaatggaagctaaagtccggtaaccattcataaatgacctctagattgaaagcgcaagcatctctgtcaaccattttt |
107 |
Q |
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| T |
9405270 |
gacatcatgaccaatgattctacaatggaagctaaagtccggtaaccattcataaatgacctctagattgaaagcgcaagcatctctgtaaaccattttt |
9405171 |
T |
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| Q |
108 |
taattaaaaatgtggtgagtaaaaacaatatcaaccaaaatacgagcataatgaccaaatacccgattgtgtggcagtatctatagtcaaaggcatacct |
207 |
Q |
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| T |
9405170 |
taattaaaaatgtggtgagtaaaaacaatatcaaccaaaatacgagcataatgaccaaatacccgattgtgtggcagtatctatagtcaaaggcatacct |
9405071 |
T |
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| Q |
208 |
attgcaccagcaattttaaaaagagtctaatcaaaccaatattcttgatgaagctccattattcttattccaacatggtc |
287 |
Q |
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| T |
9405070 |
attgcaccagcaattttaaaaagagtctaatcaaaccaatattcttgatgaagctccattattcttattccaacatggtc |
9404991 |
T |
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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 90 - 171
Target Start/End: Original strand, 2989645 - 2989726
Alignment:
| Q |
90 |
tctctgtcaaccattttttaattaaaaatgtggtgagtaaaaacaatatcaaccaaaatacgagcataatgaccaaataccc |
171 |
Q |
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| T |
2989645 |
tctctttcaaccattatttgataaaaaatgcggcgagaaaaatcaatatccaccaaaatacgagcataatgactgaataccc |
2989726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 90 - 221
Target Start/End: Original strand, 20600499 - 20600630
Alignment:
| Q |
90 |
tctctgtcaaccattttttaattaaaaatgtggtgagtaaaaacaatatcaaccaaaatacgagcataatgaccaaatacccgattgtgtggcagtatct |
189 |
Q |
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| T |
20600499 |
tctctttcaaccattatttcatcaaatatacggtaagaaaaatcaatatcacccaaaatgcgagcataatgaccgaactcgattttatgtggcagtatct |
20600598 |
T |
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| Q |
190 |
atagtcaaaggcatacctattgcaccagcaat |
221 |
Q |
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| T |
20600599 |
atagttaaaggtgtagctattgcaccagcaat |
20600630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 193
Target Start/End: Complemental strand, 19736961 - 19736894
Alignment:
| Q |
128 |
aaaaacaatatcaaccaaaatacgagcataatgaccaaatacccga--ttgtgtggcagtatctatag |
193 |
Q |
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| T |
19736961 |
aaaatcaatatcaaccaaaatgcgagcataattaccgagcactcgattttgtgtggcagtatctatag |
19736894 |
T |
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