View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4288_low_16 (Length: 270)
Name: NF4288_low_16
Description: NF4288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4288_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 39458099 - 39457844
Alignment:
| Q |
1 |
tccggtgttgcttcccttggttc-aaatcttcatattcataatatgtttgaacgagacaatgttgattccactcagttgctgcagcagactgagttggcc |
99 |
Q |
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||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
39458099 |
tccggtgttgctttccttggtttgaaatcttcatattcataatatgtttgaacgagacaacgttgattccactcagttgctgcagcagactgagttggcc |
39458000 |
T |
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| Q |
100 |
atcccaagtttcgctaactcagttccttcaaacactttgcccagttcagtgctatgcaaggaatgggagtccttcttcatgagctatgcgaaaggtctca |
199 |
Q |
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|||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39457999 |
atccgaggtttcgctaactcagttccttcaaacactttgcccagttcagtgctacgcaaggaatgggagtccttcttcatgagctatgcgaaaggtctca |
39457900 |
T |
|
| Q |
200 |
agaatgctgatgccattattgtaaattcatttgaagagctagaatcctatgccgtt |
255 |
Q |
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| T |
39457899 |
agaatgctgatgccattattgtaaattcatttgaagagctagaatcctatgccgtt |
39457844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 5 - 251
Target Start/End: Complemental strand, 39464356 - 39464110
Alignment:
| Q |
5 |
gtgttgcttcccttggttcaaatcttcatattcataatatgtttgaacgagacaatgttgattccactcagttgctgcagcagactgagttggccatccc |
104 |
Q |
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| T |
39464356 |
gtgttgctttccttggtttgaatcttcatattcacactttgtttgaacgagacaacgtcgattcaactcagctggagcaactgactgaattgtccctccc |
39464257 |
T |
|
| Q |
105 |
aagtttcgctaactcagttccttcaaacactttgcccagttcagtgctatgcaaggaatgggagtccttcttcatgagctatgcgaaaggtctcaagaat |
204 |
Q |
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| T |
39464256 |
gagtttcgctaactccgttcctacaaaatcgttgcccagtgcagtaatacgcaaggaatccgagtcgtttttcatgagctatgcaaaaggcctcaagaag |
39464157 |
T |
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| Q |
205 |
gctgatgccattattgtaaattcatttgaagagctagaatcctatgc |
251 |
Q |
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||||||| |||| ||||||||||||||||||||||||||| |||| |
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| T |
39464156 |
gctgatggttttatagtaaattcatttgaagagctagaatcccatgc |
39464110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 39460617 - 39460867
Alignment:
| Q |
1 |
tccggtgttgcttcccttggttcaaatcttcatattcataatatgtttgaacgagacaatgttgattccactcagttgctgcagcagactgagttggcca |
100 |
Q |
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||||||||||||||||||||||||||||||||||| || | | | |||| ||||||| || ||||| | |||||||| |||||||||||| ||||||| |
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| T |
39460617 |
tccggtgttgcttcccttggttcaaatcttcatatccacactcttcgtgaaagagacaacgtagattcaaatcagttgcagcagcagactgaattggcca |
39460716 |
T |
|
| Q |
101 |
tcccaagtttcgctaactcagttccttcaaacactttgcccagttcagtgctatgcaaggaatgggagtccttcttcatgagctatgcgaaaggtctcaa |
200 |
Q |
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| |||| |||||| ||||| |||||| | || | |||||||||| ||||| |||||||||||| ||||| || |||| |||||| || ||||| |
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| T |
39460717 |
taccaactttcgccaactcggttcctatatactcgctgcccagttccatgctaaacaaggaatgggaatccttttttatgaactatgctggtggcctcaa |
39460816 |
T |
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| Q |
201 |
gaatgctgatgccattattgtaaattcatttgaagagctagaatcctatgc |
251 |
Q |
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||| || ||| ||||| ||||||||||||||||||||||||||| |||| |
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| T |
39460817 |
gaaagcaaatggtattatagtaaattcatttgaagagctagaatcccatgc |
39460867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 7 - 245
Target Start/End: Original strand, 39451376 - 39451614
Alignment:
| Q |
7 |
gttgcttcccttggttcaaatcttcatattcataatatgtttgaacgagacaatgttgattccactcagttgctgcagcagactgagttggccatcccaa |
106 |
Q |
| |
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|||||||||||||||| |||||||||||||||| | |||||||||||| |||||||| |||||||||| |||||||| ||||| |||||||| | |
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| T |
39451376 |
gttgcttcccttggtttgaatcttcatattcataccctccgtgaacgagacaacgttgattcaactcagttgcagcagcagaaagagttagccatcccga |
39451475 |
T |
|
| Q |
107 |
gtttcgctaactcagttccttcaaacactttgcccagttcagtgctatgcaaggaatgggagtccttcttcatgagctatgcgaaaggtctcaagaatgc |
206 |
Q |
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||||||| ||| ||||||||| | | ||||| |||| || ||| ||||||||||||| | || |||||||||| |||| ||||||||||| |
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| T |
39451476 |
ctttcgctcacttgtttccttcaagctcattgcctggttccgtcctaagcaaggaatgggaaccgtttttcatgagcttcatagaaggcctcaagaatgc |
39451575 |
T |
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| Q |
207 |
tgatgccattattgtaaattcatttgaagagctagaatc |
245 |
Q |
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|||| |||||| |||||||||||||||||||||||||| |
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| T |
39451576 |
cgatggcattatagtaaattcatttgaagagctagaatc |
39451614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 8 - 251
Target Start/End: Complemental strand, 39470555 - 39470312
Alignment:
| Q |
8 |
ttgcttcccttggttcaaatcttcatattcataatatgtttgaacgagacaatgttgattccactcagttgctgcagcagactgagttggccatcccaag |
107 |
Q |
| |
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|||||| |||||||| ||||| ||||||| || ||||||||||||||| ||||| ||||||||| |||| | || ||| || |||| || || |
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| T |
39470555 |
ttgctttccttggtttgaatctctatattcaatatctgtttgaacgagacagcaccgattcgactcagttgatgcaactcacagagctgcccattccgag |
39470456 |
T |
|
| Q |
108 |
tttcgctaactcagttccttcaaacactttgcccagttcagtgctatgcaaggaatgggagtccttcttcatgagctatgcgaaaggtctcaagaatgct |
207 |
Q |
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||| ||||| | |||||| |||| | |||||||||||||||||| |||||||| | ||| |||||||||||| || ||||| ||||||||||| |
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| T |
39470455 |
ttttgctaatccgtttcctttaaactcgttgcccagttcagtgctacacaaggaatacaaatccgtcttcatgagcttcgccaaaggcctcaagaatgcc |
39470356 |
T |
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| Q |
208 |
gatgccattattgtaaattcatttgaagagctagaatcctatgc |
251 |
Q |
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|||| ||||||||| ||||||||||||||||||||||||||||| |
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| T |
39470355 |
gatggcattattgtcaattcatttgaagagctagaatcctatgc |
39470312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 48 - 245
Target Start/End: Original strand, 39475923 - 39476120
Alignment:
| Q |
48 |
tgaacgagacaatgttgattccactcagttgctgcagcagactgagttggccatcccaagtttcgctaactcagttccttcaaacactttgcccagttca |
147 |
Q |
| |
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||||||||||||||| ||||| |||||| |||||| ||||| ||| | |||||||| |||||||| ||| | ||||||||||| | |||||||||| |
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| T |
39475923 |
tgaacgagacaatgtcgattcgactcagctgctgctgcagaacgaggtagccatcccgagtttcgccaaccccgttccttcaaaatcattgcccagtttt |
39476022 |
T |
|
| Q |
148 |
gtgctatgcaaggaatgggagtccttcttcatgagctatgcgaaaggtctcaagaatgctgatgccattattgtaaattcatttgaagagctagaatc |
245 |
Q |
| |
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|||||| ||||||||||||||| || |||||||| ||| | ||| |||||||| | ||| |||||| ||||| |||||||||||||||||||| |
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| T |
39476023 |
gtgctacacaaggaatgggagtcgtttttcatgagacttgcaagaggcctcaagaaagtaaatggcattatagtaaactcatttgaagagctagaatc |
39476120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 50 - 246
Target Start/End: Original strand, 39472449 - 39472645
Alignment:
| Q |
50 |
aacgagacaatgttgattccactcagttgctgcagcagactgagttggccatcccaagtttcgctaactcagttccttcaaacactttgcccagttcagt |
149 |
Q |
| |
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||||||||||||| |||| ||| ||||| | || | ||||| ||||| |||| ||||||||||||| ||||| |||| | ||||||||| | || |
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| T |
39472449 |
aacgagacaatgtctattcaactaagttgttacaactcactgacttggctgtcccgagtttcgctaacttggttccaacaaaagcattgcccagtgctgt |
39472548 |
T |
|
| Q |
150 |
gctatgcaaggaatgggagtccttcttcatgagctatgcgaaaggtctcaagaatgctgatgccattattgtaaattcatttgaagagctagaatcc |
246 |
Q |
| |
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|||| |||| ||||||||||| || | ||| ||||| |||||| |||||||| ||||||| | |||| ||||||||||||||||||||||||||| |
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| T |
39472549 |
gctaagcaaagaatgggagtcgtttatgatgggctattggaaaggcctcaagaacgctgatggctttatagtaaattcatttgaagagctagaatcc |
39472645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 119
Target Start/End: Original strand, 39486878 - 39486953
Alignment:
| Q |
44 |
tgtttgaacgagacaatgttgattccactcagttgctgcagcagactgagttggccatcccaagtttcgctaactc |
119 |
Q |
| |
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|||||||||||||||| | ||||| ||||||||||||||||||| ||| | |||||||||||||| || ||||| |
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| T |
39486878 |
tgtttgaacgagacaacatcgattcaactcagttgctgcagcagaacgaggtagccatcccaagttttgccaactc |
39486953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 245
Target Start/End: Original strand, 39487043 - 39487079
Alignment:
| Q |
209 |
atgccattattgtaaattcatttgaagagctagaatc |
245 |
Q |
| |
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|||||||||| |||||||||||||||||| ||||||| |
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| T |
39487043 |
atgccattatagtaaattcatttgaagagttagaatc |
39487079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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