View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4288_low_3 (Length: 485)

Name: NF4288_low_3
Description: NF4288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4288_low_3
NF4288_low_3
[»] chr6 (8 HSPs)
chr6 (55-166)||(31442516-31442627)
chr6 (110-165)||(26840415-26840470)
chr6 (96-166)||(31665629-31665700)
chr6 (57-165)||(7867910-7868018)
chr6 (96-163)||(15296147-15296215)
chr6 (110-169)||(26839985-26840044)
chr6 (59-165)||(826696-826802)
chr6 (81-165)||(20915983-20916067)
[»] chr7 (5 HSPs)
chr7 (55-165)||(20077302-20077412)
chr7 (109-165)||(48850726-48850782)
chr7 (55-165)||(4407779-4407887)
chr7 (110-165)||(11072196-11072251)
chr7 (109-165)||(39742308-39742364)
[»] chr2 (10 HSPs)
chr2 (302-395)||(41476967-41477063)
chr2 (109-162)||(21922337-21922390)
chr2 (95-165)||(38996520-38996590)
chr2 (109-166)||(6667462-6667519)
chr2 (110-166)||(32281485-32281541)
chr2 (302-395)||(41484010-41484104)
chr2 (83-165)||(28125536-28125618)
chr2 (321-376)||(41469976-41470031)
chr2 (109-166)||(28926074-28926132)
chr2 (326-395)||(40751249-40751318)
[»] chr8 (7 HSPs)
chr8 (55-167)||(26981033-26981145)
chr8 (55-165)||(26083903-26084013)
chr8 (96-166)||(42315341-42315412)
chr8 (51-165)||(23828343-23828458)
chr8 (119-166)||(7496757-7496804)
chr8 (55-127)||(5334311-5334383)
chr8 (109-165)||(42932716-42932772)
[»] chr5 (4 HSPs)
chr5 (96-165)||(37337323-37337393)
chr5 (96-166)||(26110687-26110758)
chr5 (109-164)||(22780073-22780128)
chr5 (55-127)||(9045161-9045233)
[»] chr4 (10 HSPs)
chr4 (96-165)||(12094856-12094925)
chr4 (109-165)||(9199512-9199568)
chr4 (376-418)||(16408554-16408596)
chr4 (109-165)||(24257703-24257759)
chr4 (95-162)||(9451245-9451312)
chr4 (55-154)||(10427608-10427706)
chr4 (92-166)||(6898749-6898823)
chr4 (55-165)||(9199750-9199860)
chr4 (311-368)||(16408794-16408849)
chr4 (109-165)||(27067874-27067930)
[»] chr3 (7 HSPs)
chr3 (109-166)||(15291460-15291517)
chr3 (95-166)||(39484808-39484880)
chr3 (109-165)||(1529165-1529222)
chr3 (109-166)||(52041398-52041455)
chr3 (118-165)||(49235500-49235547)
chr3 (109-166)||(15996393-15996450)
chr3 (135-167)||(1141742-1141774)
[»] chr1 (3 HSPs)
chr1 (110-165)||(15700721-15700776)
chr1 (116-166)||(44508600-44508650)
chr1 (116-153)||(24819195-24819232)


Alignment Details
Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 55 - 166
Target Start/End: Complemental strand, 31442627 - 31442516
Alignment:
Q  55 tgattaggataagcaataaggaaaaattaatggttggacaatggagagaaatttttaggttaaaattagggtaagttatagcttgaccaaacaagcttta 154  Q
    ||||||||| ||||| | |||| || |||||| |||||  |||||| |||| | ||||||||||||||||||| || || ||||||||||||||||||||    
T  31442627 tgattaggaaaagcacttaggagaatttaatgcttggatgatggagggaaaatattaggttaaaattagggtatgtgattgcttgaccaaacaagcttta 31442528  T
Q  155 gaaagaaagata 166  Q
    | ||||||||||    
T  31442527 gtaagaaagata 31442516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 110 - 165
Target Start/End: Complemental strand, 26840470 - 26840415
Alignment:
Q  110 taggttaaaattagggtaagttatagcttgaccaaacaagctttagaaagaaagat 165  Q
    |||||||| |||||||| | | || |||||||||||||||||||||||||||||||    
T  26840470 taggttaagattagggttaatgatggcttgaccaaacaagctttagaaagaaagat 26840415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 96 - 166
Target Start/End: Original strand, 31665629 - 31665700
Alignment:
Q  96 tggagagaaatttttaggttaa-aattagggtaagttatagcttgaccaaacaagctttagaaagaaagata 166  Q
    ||||| |||| | ||||||||| ||||||||| | | |||||||||||||||||||||||| ||||||||||    
T  31665629 tggagggaaaatattaggttaagaattagggttactaatagcttgaccaaacaagctttagtaagaaagata 31665700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 57 - 165
Target Start/End: Original strand, 7867910 - 7868018
Alignment:
Q  57 attaggataagcaataaggaaaaattaatggttggacaatggagagaaatttttaggttaaaattagggtaagttatagcttgaccaaacaagctttaga 156  Q
    |||| |||||||| | || |||| | |||| ||| ||||||||| |||| | ||||| | ||||||||||| |  |||||||||||| | |||||||||     
T  7867910 attaagataagcacttagaaaaattaaatgcttgtacaatggagggaaaatattagggttaaattagggtatgagatagcttgaccagataagctttagt 7868009  T
Q  157 aagaaagat 165  Q
    |||||||||    
T  7868010 aagaaagat 7868018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 96 - 163
Target Start/End: Complemental strand, 15296215 - 15296147
Alignment:
Q  96 tggagagaaatttttaggttaaaa-ttagggtaagttatagcttgaccaaacaagctttagaaagaaag 163  Q
    ||||| |||| | ||||||||||| ||||||| | |||||||||||| ||||||||||||| |||||||    
T  15296215 tggagggaaaatattaggttaaaaattagggttacttatagcttgacaaaacaagctttagtaagaaag 15296147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 169
Target Start/End: Complemental strand, 26840044 - 26839985
Alignment:
Q  110 taggttaaaattagggtaagttatagcttgaccaaacaagctttagaaagaaagatacat 169  Q
    |||||||| |||||||| | | || |||||| ||||||| ||||||||||||||||||||    
T  26840044 taggttaagattagggttaatgatggcttgatcaaacaaactttagaaagaaagatacat 26839985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 165
Target Start/End: Original strand, 826696 - 826802
Alignment:
Q  59 taggataagcaataaggaaaaattaatggttggacaatggagagaaatttttaggttaaaattagggtaagttatagcttgaccaaacaagctttagaaa 158  Q
    ||||| ||||| ||| ||||| | |||| |||| | |||||| |||| | |||||||||||||| ||| |   |||||||||||| ||||| ||||| ||    
T  826696 taggaaaagcactaacgaaaattaaatgattgggcgatggagggaaaatattaggttaaaattaaggtgaacaatagcttgaccagacaagttttagtaa 826795  T
Q  159 gaaagat 165  Q
    |||||||    
T  826796 gaaagat 826802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 81 - 165
Target Start/End: Original strand, 20915983 - 20916067
Alignment:
Q  81 ttaatggttggacaatggagagaaatttttaggttaaaattagggtaagttatagcttgaccaaacaagctttagaaagaaagat 165  Q
    |||||| |||||  |||||| |||| | |||||||||||||| ||||   ||| |||||| || ||||||||||| |||||||||    
T  20915983 ttaatgcttggatgatggagggaaaatattaggttaaaattaaggtatcatattgcttgatcagacaagctttagtaagaaagat 20916067  T

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Target: chr7 (Bit Score: 51; Significance: 5e-20; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 55 - 165
Target Start/End: Original strand, 20077302 - 20077412
Alignment:
Q  55 tgattaggataagcaataaggaaaaattaatggttggacaatggagagaaatttttaggttaaaattagggtaagttatagcttgaccaaacaagcttta 154  Q
    ||||||||| ||||| |||||  || |||||| |||||  |||||| |||| | ||||||||||||||||||| | ||| ||||||||||||||||||||    
T  20077302 tgattaggaaaagcactaaggtgaatttaatgcttggatgatggagggaaaatattaggttaaaattagggtatgatattgcttgaccaaacaagcttta 20077401  T
Q  155 gaaagaaagat 165  Q
    | |||||||||    
T  20077402 gtaagaaagat 20077412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 109 - 165
Target Start/End: Complemental strand, 48850782 - 48850726
Alignment:
Q  109 ttaggttaaaattagggtaagttatagcttgaccaaacaagctttagaaagaaagat 165  Q
    ||||||||| ||||||||||   ||||||||| || |||||||||||||||||||||    
T  48850782 ttaggttaagattagggtaaacaatagcttgatcagacaagctttagaaagaaagat 48850726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 55 - 165
Target Start/End: Complemental strand, 4407887 - 4407779
Alignment:
Q  55 tgattaggataagcaataaggaaaaattaatggttggacaatggagagaaatttttaggttaaaattagggtaagttatagcttgaccaaacaagcttta 154  Q
    ||||||||| || || |||||| || |||||| ||||   |||||| |||| | ||||||||||||||||||| | ||| ||||||||| ||  ||||||    
T  4407887 tgattaggaaaaacactaaggagaatttaatgtttgggtgatggagggaaaatattaggttaaaattagggtatgatattgcttgaccagac--gcttta 4407790  T
Q  155 gaaagaaagat 165  Q
    | |||||||||    
T  4407789 gtaagaaagat 4407779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 165
Target Start/End: Original strand, 11072196 - 11072251
Alignment:
Q  110 taggttaaaattagggtaagttatagcttgaccaaacaagctttagaaagaaagat 165  Q
    ||||||||||||||||| ||  || ||||||||  |||||||||||||||||||||    
T  11072196 taggttaaaattagggttagggattgcttgaccggacaagctttagaaagaaagat 11072251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 109 - 165
Target Start/End: Original strand, 39742308 - 39742364
Alignment:
Q  109 ttaggttaaaattagggtaagttatagcttgaccaaacaagctttagaaagaaagat 165  Q
    ||||||||| |||||||| |   ||||||||| |||||||||||||| |||||||||    
T  39742308 ttaggttaagattagggttatcaatagcttgatcaaacaagctttagtaagaaagat 39742364  T

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Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 302 - 395
Target Start/End: Original strand, 41476967 - 41477063
Alignment:
Q  302 gcaatgctcaattaataattctct--ttttaaccctcttttgaacacactttatctgataagtctatttctt-aaaatttaacacatttctttgaaa 395  Q
    |||||||| ||| |||||||||||  |||||||||||| ||||||||||||| ||||||| ||||||||||| ||||| ||||||||| ||||||||    
T  41476967 gcaatgctaaatgaataattctctccttttaaccctctcttgaacacactttttctgataggtctatttcttaaaaatataacacattactttgaaa 41477063  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 109 - 162
Target Start/End: Complemental strand, 21922390 - 21922337
Alignment:
Q  109 ttaggttaaaattagggtaagttatagcttgaccaaacaagctttagaaagaaa 162  Q
    ||||||||| |||||||||||||||||||||| || ||||||||||||||||||    
T  21922390 ttaggttaagattagggtaagttatagcttgatcagacaagctttagaaagaaa 21922337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 95 - 165
Target Start/End: Original strand, 38996520 - 38996590
Alignment:
Q  95 atggagagaaatttttaggttaaaattagggtaagttatagcttgaccaaacaagctttagaaagaaagat 165  Q
    |||||| |||| | ||||||||||||||||||||  |||||||||| || ||||||||||| |||||||||    
T  38996520 atggagggaaaatattaggttaaaattagggtaacatatagcttgatcagacaagctttagtaagaaagat 38996590  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 109 - 166
Target Start/End: Complemental strand, 6667519 - 6667462
Alignment:
Q  109 ttaggttaaaattagggtaagttatagcttgaccaaacaagctttagaaagaaagata 166  Q
    ||||||||  ||||||||||   |||||||||||||||||||||||||||||||||||    
T  6667519 ttaggttaggattagggtaaacaatagcttgaccaaacaagctttagaaagaaagata 6667462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 110 - 166
Target Start/End: Complemental strand, 32281541 - 32281485
Alignment:
Q  110 taggttaaaattagggtaagttatagcttgaccaaacaagctttagaaagaaagata 166  Q
    ||||||||||||||||| | | ||||||||||||||||| |||||| ||||||||||    
T  32281541 taggttaaaattagggttactaatagcttgaccaaacaaactttagtaagaaagata 32281485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 302 - 395
Target Start/End: Original strand, 41484010 - 41484104
Alignment:
Q  302 gcaatgctcaattaataattctct--ttttaaccctcttttgaacacactttatctgataagtctatttcttaaaatttaacacatttctttgaaa 395  Q
    |||||||| ||| ||| |||||||  ||||||||||||  |||||||||||| | ||||| ||| |||||| ||| ||||||||||||||||||||    
T  41484010 gcaatgctaaatgaattattctctccttttaaccctctcatgaacacacttt-tgtgataggtcaatttctaaaattttaacacatttctttgaaa 41484104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 83 - 165
Target Start/End: Complemental strand, 28125618 - 28125536
Alignment:
Q  83 aatggttggacaatggagagaaatttttaggttaaaattagggtaagttatagcttgaccaaacaagctttagaaagaaagat 165  Q
    |||| ||| ||||||||| |||| | ||||| | ||||||||||| |  |||||||||||| ||||||||||| |||||||||    
T  28125618 aatgcttgtacaatggagggaaaatattagggttaaattagggtatgagatagcttgaccagacaagctttagtaagaaagat 28125536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 321 - 376
Target Start/End: Original strand, 41469976 - 41470031
Alignment:
Q  321 tctctttttaaccctcttttgaacacactttatctgataagtctatttcttaaaat 376  Q
    |||||||||||  |||| ||||||||||||| ||||||| ||||| ||||||||||    
T  41469976 tctctttttaatgctctcttgaacacactttttctgataggtctacttcttaaaat 41470031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 166
Target Start/End: Complemental strand, 28926132 - 28926074
Alignment:
Q  109 ttaggttaa-aattagggtaagttatagcttgaccaaacaagctttagaaagaaagata 166  Q
    ||||||||| ||||||||| | | |||||||||||| ||||||||||| ||||||||||    
T  28926132 ttaggttaagaattagggttactaatagcttgaccagacaagctttagtaagaaagata 28926074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 326 - 395
Target Start/End: Original strand, 40751249 - 40751318
Alignment:
Q  326 ttttaaccctcttttgaacacactttatc-tgataagtctatttcttaaaatttaacacatttctttgaaa 395  Q
    |||||||||||| || |||||||||| || ||||| |||| ||||| ||| ||||||||||||||||||||    
T  40751249 ttttaaccctctcttaaacacactttttcctgata-gtctgtttctaaaattttaacacatttctttgaaa 40751318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 55 - 167
Target Start/End: Complemental strand, 26981145 - 26981033
Alignment:
Q  55 tgattaggataagcaataaggaaaaattaatggttggacaatggagagaaatttttaggttaaaattagggtaagttatagcttgaccaaacaagcttta 154  Q
    ||||||||| || || |||||| || |||||| |||||  ||||||  ||| | ||||||||||||||||||| | ||| |||||| |||||||||||||    
T  26981145 tgattaggaaaaacactaaggagaatttaatgcttggatgatggaggaaaaatattaggttaaaattagggtatgatattgcttgatcaaacaagcttta 26981046  T
Q  155 gaaagaaagatac 167  Q
    | |||||||||||    
T  26981045 gtaagaaagatac 26981033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 55 - 165
Target Start/End: Complemental strand, 26084013 - 26083903
Alignment:
Q  55 tgattaggataagcaataaggaaaaattaatggttggacaatggagagaaatttttaggttaaaattagggtaagttatagcttgaccaaacaagcttta 154  Q
    ||||||||| ||||| |||| | || |||||| || ||  |||||| |||| | ||||||||||||||||||| | ||| ||||||||| ||||||||||    
T  26084013 tgattaggaaaagcactaagaagaatttaatgctttgatgatggagggaaaatattaggttaaaattagggtatgatattgcttgaccagacaagcttta 26083914  T
Q  155 gaaagaaagat 165  Q
    | |||||||||    
T  26083913 gtaagaaagat 26083903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 96 - 166
Target Start/End: Complemental strand, 42315412 - 42315341
Alignment:
Q  96 tggagagaaatttttaggttaa-aattagggtaagttatagcttgaccaaacaagctttagaaagaaagata 166  Q
    ||||| |||| | ||||||||| ||||||||| | | |||||||||||||||||||||||| ||||||||||    
T  42315412 tggagggaaaatattaggttaagaattagggttactaatagcttgaccaaacaagctttagtaagaaagata 42315341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 51 - 165
Target Start/End: Complemental strand, 23828458 - 23828343
Alignment:
Q  51 atgctgattaggataagcaataaggaaaaattaatggttgga-caatggagagaaatttttaggttaaaa-ttagggtaagttatagcttgaccaaacaa 148  Q
    |||||||||||||||| || ||||||  |||||| || || | || ||||| |||| | ||||||||||| ||||||| | | |||||||||||||||||    
T  23828458 atgctgattaggataaacactaaggagtaattaa-ggctgaagcattggagggaaaatattaggttaaaaattagggttactaatagcttgaccaaacaa 23828360  T
Q  149 gctttagaaagaaagat 165  Q
    ||| ||| |||||||||    
T  23828359 gctctagtaagaaagat 23828343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 119 - 166
Target Start/End: Complemental strand, 7496804 - 7496757
Alignment:
Q  119 attagggtaagttatagcttgaccaaacaagctttagaaagaaagata 166  Q
    |||||||| || |||||||||| |||||||||||||| ||||||||||    
T  7496804 attagggtcagctatagcttgatcaaacaagctttagtaagaaagata 7496757  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 127
Target Start/End: Complemental strand, 5334383 - 5334311
Alignment:
Q  55 tgattaggataagcaataaggaaaaattaatggttggacaatggagagaaatttttaggttaaaattagggta 127  Q
    ||||||||| ||||| ||| || || |||||| |||||  |||||| |||| | |||||||||||||||||||    
T  5334383 tgattaggaaaagcattaaagagaatttaatgcttggatgatggagggaaaatcttaggttaaaattagggta 5334311  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 109 - 165
Target Start/End: Complemental strand, 42932772 - 42932716
Alignment:
Q  109 ttaggttaaaattagggtaagttatagcttgaccaaacaagctttagaaagaaagat 165  Q
    |||||||||||||||| || | ||| |||||| || ||||||||||| |||||||||    
T  42932772 ttaggttaaaattaggatatgatattgcttgatcagacaagctttagtaagaaagat 42932716  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 96 - 165
Target Start/End: Complemental strand, 37337393 - 37337323
Alignment:
Q  96 tggagagaaatttttaggttaaaa-ttagggtaagttatagcttgaccaaacaagctttagaaagaaagat 165  Q
    ||||| |||| | ||||||||||| ||||||| | |||||||||||||||||||||||||| |||||||||    
T  37337393 tggagggaaaatattaggttaaaaattagggttacttatagcttgaccaaacaagctttagtaagaaagat 37337323  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 96 - 166
Target Start/End: Complemental strand, 26110758 - 26110687
Alignment:
Q  96 tggagagaaatttttaggttaaaa-ttagggtaagttatagcttgaccaaacaagctttagaaagaaagata 166  Q
    ||||| |||| | ||||||||||| ||||||| | |||||||||||||||||||| ||||| ||||||||||    
T  26110758 tggagggaaaatattaggttaaaaattagggttacttatagcttgaccaaacaagttttagtaagaaagata 26110687  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 109 - 164
Target Start/End: Original strand, 22780073 - 22780128
Alignment:
Q  109 ttaggttaaaattagggtaagttatagcttgaccaaacaagctttagaaagaaaga 164  Q
    ||||||||| ||||||||||   ||||||||| || ||||||||||||||||||||    
T  22780073 ttaggttaagattagggtaaacaatagcttgatcagacaagctttagaaagaaaga 22780128  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 127
Target Start/End: Complemental strand, 9045233 - 9045161
Alignment:
Q  55 tgattaggataagcaataaggaaaaattaatggttggacaatggagagaaatttttaggttaaaattagggta 127  Q
    ||||||||| ||||| |||||| || |||||| || ||  |||||| |||| | |||||||||||||||||||    
T  9045233 tgattaggaaaagcactaaggagaatttaatgttttgatgatggagggaaaatattaggttaaaattagggta 9045161  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 96 - 165
Target Start/End: Original strand, 12094856 - 12094925
Alignment:
Q  96 tggagagaaatttttaggttaaaattagggtaagttatagcttgaccaaacaagctttagaaagaaagat 165  Q
    ||||| |||| | ||||||||||||||||||   | |||||||||||||||||||||||| |||||||||    
T  12094856 tggagggaaaatattaggttaaaattagggtttctaatagcttgaccaaacaagctttagtaagaaagat 12094925  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 109 - 165
Target Start/End: Complemental strand, 9199568 - 9199512
Alignment:
Q  109 ttaggttaaaattagggtaagttatagcttgaccaaacaagctttagaaagaaagat 165  Q
    ||||||||||||||||||| | ||| ||||||||| ||||||||||| |||||||||    
T  9199568 ttaggttaaaattagggtatgatattgcttgaccagacaagctttagtaagaaagat 9199512  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 376 - 418
Target Start/End: Complemental strand, 16408596 - 16408554
Alignment:
Q  376 tttaacacatttctttgaaatatggaataattacaaaaagtgt 418  Q
    |||||||||||||||| |||||||||||||||||| |||||||    
T  16408596 tttaacacatttcttttaaatatggaataattacagaaagtgt 16408554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 109 - 165
Target Start/End: Complemental strand, 24257759 - 24257703
Alignment:
Q  109 ttaggttaaaattagggtaagttatagcttgaccaaacaagctttagaaagaaagat 165  Q
    |||||||||||||||||| |   || ||||||||||||||||||||| |||||||||    
T  24257759 ttaggttaaaattagggtgaacaattgcttgaccaaacaagctttagtaagaaagat 24257703  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 95 - 162
Target Start/End: Complemental strand, 9451312 - 9451245
Alignment:
Q  95 atggagagaaatttttaggttaaaattagggtaagttatagcttgaccaaacaagctttagaaagaaa 162  Q
    |||||| |||| | |||||||||||||||||| |   |||||||||||| ||||||||||| ||||||    
T  9451312 atggagggaaaatattaggttaaaattagggtgaacaatagcttgaccagacaagctttagtaagaaa 9451245  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 55 - 154
Target Start/End: Original strand, 10427608 - 10427706
Alignment:
Q  55 tgattaggataagcaataaggaaaaattaatggttggacaatggagagaaatttttaggttaaaattagggtaagttatagcttgaccaaacaagcttta 154  Q
    ||||||||| || || |||| | || |||||| |||||  |||||| ||||| || ||||||||||||||||| | ||| |||||||||||||| |||||    
T  10427608 tgattaggaaaaacactaagaagaatttaatgcttggatgatggagggaaatatt-aggttaaaattagggtatgatattgcttgaccaaacaaccttta 10427706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 92 - 166
Target Start/End: Original strand, 6898749 - 6898823
Alignment:
Q  92 acaatggagagaaatttttaggttaaaattagggtaagttatagcttgaccaaacaagctttagaaagaaagata 166  Q
    ||||||||  |||| | ||||||||| |||||||| |   ||||||||| |||||||||||||| ||||||||||    
T  6898749 acaatggacggaaaatattaggttaagattagggttaccaatagcttgatcaaacaagctttagtaagaaagata 6898823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 55 - 165
Target Start/End: Complemental strand, 9199860 - 9199750
Alignment:
Q  55 tgattaggataagcaataaggaaaaattaatggttggacaatggagagaaatttttaggttaaaattagggtaagttatagcttgaccaaacaagcttta 154  Q
    ||||||||| ||| | |||||| || |||||| |||||  |||||| |||| | ||||||||| | | || || | ||| ||||||||| ||||||||||    
T  9199860 tgattaggaaaagaactaaggagaatttaatgcttggatgatggagggaaaatattaggttaatagtgggatatgatattgcttgaccagacaagcttta 9199761  T
Q  155 gaaagaaagat 165  Q
    | |||||||||    
T  9199760 gtaagaaagat 9199750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 311 - 368
Target Start/End: Complemental strand, 16408849 - 16408794
Alignment:
Q  311 aattaataattctctttttaaccctcttttgaacacactttatctgataagtctattt 368  Q
    |||||||||||||||||||||  |||| ||||||||||||| ||||||| || |||||    
T  16408849 aattaataattctctttttaa--ctctcttgaacacactttttctgataggtgtattt 16408794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 109 - 165
Target Start/End: Complemental strand, 27067930 - 27067874
Alignment:
Q  109 ttaggttaaaattagggtaagttatagcttgaccaaacaagctttagaaagaaagat 165  Q
    |||| ||||||||||||||    |||| ||||||||||||||||||| |||||||||    
T  27067930 ttagattaaaattagggtataggatagtttgaccaaacaagctttagtaagaaagat 27067874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 109 - 166
Target Start/End: Complemental strand, 15291517 - 15291460
Alignment:
Q  109 ttaggttaaaattagggtaagttatagcttgaccaaacaagctttagaaagaaagata 166  Q
    ||||||||| ||||||||||   |||||||||||||||||||||||| ||||||||||    
T  15291517 ttaggttaagattagggtaaacaatagcttgaccaaacaagctttagtaagaaagata 15291460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 95 - 166
Target Start/End: Original strand, 39484808 - 39484880
Alignment:
Q  95 atggagagaaatttttaggttaaaattagggt-aagttatagcttgaccaaacaagctttagaaagaaagata 166  Q
    |||||| |||| | ||||||||||| |||||| ||  ||||||||||||||||||||||||| ||||||||||    
T  39484808 atggagggaaaatattaggttaaaactagggtgaacatatagcttgaccaaacaagctttagtaagaaagata 39484880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 109 - 165
Target Start/End: Complemental strand, 1529222 - 1529165
Alignment:
Q  109 ttaggttaa-aattagggtaagttatagcttgaccaaacaagctttagaaagaaagat 165  Q
    ||||||||| ||||||||| | | |||||||||||||||||||||||| |||||||||    
T  1529222 ttaggttaagaattagggttactaatagcttgaccaaacaagctttagtaagaaagat 1529165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 109 - 166
Target Start/End: Original strand, 52041398 - 52041455
Alignment:
Q  109 ttaggttaaaattagggtaagttatagcttgaccaaacaagctttagaaagaaagata 166  Q
    |||||||||||||||||| |   |||||||||||| ||||||||||| ||||||||||    
T  52041398 ttaggttaaaattagggtgaacaatagcttgaccagacaagctttagtaagaaagata 52041455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 118 - 165
Target Start/End: Original strand, 49235500 - 49235547
Alignment:
Q  118 aattagggtaagttatagcttgaccaaacaagctttagaaagaaagat 165  Q
    ||||||||||| | ||||||||||||||||| |||||| |||||||||    
T  49235500 aattagggtaaatgatagcttgaccaaacaaactttagtaagaaagat 49235547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 166
Target Start/End: Original strand, 15996393 - 15996450
Alignment:
Q  109 ttaggttaaaattagggtaagttatagcttgaccaaacaagctttagaaagaaagata 166  Q
    |||||||| |||||||||||   ||||||||| || ||||||||||| ||||||||||    
T  15996393 ttaggttagaattagggtaaacaatagcttgatcagacaagctttagtaagaaagata 15996450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 135 - 167
Target Start/End: Complemental strand, 1141774 - 1141742
Alignment:
Q  135 gcttgaccaaacaagctttagaaagaaagatac 167  Q
    ||||||||||||||||||||| |||||||||||    
T  1141774 gcttgaccaaacaagctttagtaagaaagatac 1141742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 110 - 165
Target Start/End: Complemental strand, 15700776 - 15700721
Alignment:
Q  110 taggttaaaattagggtaagttatagcttgaccaaacaagctttagaaagaaagat 165  Q
    ||||||||||||||||| | | ||||||||||||||||| |||||| |||||||||    
T  15700776 taggttaaaattagggttactaatagcttgaccaaacaaactttagtaagaaagat 15700721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 116 - 166
Target Start/End: Complemental strand, 44508650 - 44508600
Alignment:
Q  116 aaaattagggtaagttatagcttgaccaaacaagctttagaaagaaagata 166  Q
    ||||||||||| ||| ||||||||| || ||||||||||||||||||||||    
T  44508650 aaaattagggttagtaatagcttgatcagacaagctttagaaagaaagata 44508600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 153
Target Start/End: Complemental strand, 24819232 - 24819195
Alignment:
Q  116 aaaattagggtaagttatagcttgaccaaacaagcttt 153  Q
    ||||||||||| ||| ||||||||||||||||||||||    
T  24819232 aaaattagggttagtaatagcttgaccaaacaagcttt 24819195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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