View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4288_low_9 (Length: 323)
Name: NF4288_low_9
Description: NF4288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4288_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 20 - 316
Target Start/End: Original strand, 26303013 - 26303309
Alignment:
| Q |
20 |
ttgtggatgttcatcaacagcaatggcagagaagatttcatggaactgtgctttgtttgtggcattgatgttggttttgagcttctgcgaatcaaacaca |
119 |
Q |
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| T |
26303013 |
ttgtggatgttcatcaacagcaatggcagagaagatttcatggaactgtgctttgtttgtggcattgatgttggttttgagcttctgcgaatcaaacaca |
26303112 |
T |
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| Q |
120 |
agtgatgatgagttgaatgttcagatacagaatatgcttcaagagaatgattttagtaatactaatatgaacaacaacaaagtgtgtgatgagatatacg |
219 |
Q |
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| T |
26303113 |
agtgatgatgagttgaatgttcagatacagaatatgcttcaagagaatgattttagtaatactcatgtgaacaaaaacaaagtgtgtgatgagatatacg |
26303212 |
T |
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| Q |
220 |
ttgttggcgagggagagacacttcaaacaataagtgaaaaatgtggtgatccttacattgttgaagagaatccacatattcatgatcctgatgatgt |
316 |
Q |
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| T |
26303213 |
ttgttggcgagggagagacacttcaaacaataagtgaaaagtgtggtgatccttatattgttgaagagaatccacatattcatgatcctgatgatgt |
26303309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 316
Target Start/End: Original strand, 45924385 - 45924497
Alignment:
| Q |
204 |
tgtgatgagatatacgttgttggcgagggagagacacttcaaacaataagtgaaaaatgtggtgatccttacattgttgaagagaatccacatattcatg |
303 |
Q |
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|||||||||||||| ||||| || || || || ||||| | ||||| |||||||| |||||||| || | ||||| || |||||||||||| |||| |
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| T |
45924385 |
tgtgatgagatatatgttgtgggagaaggtgaaacactcaacacaatcagtgaaaagtgtggtgacccgtttattgtagagaggaatccacatatccatg |
45924484 |
T |
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| Q |
304 |
atcctgatgatgt |
316 |
Q |
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|||| |||||||| |
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| T |
45924485 |
atccagatgatgt |
45924497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 316
Target Start/End: Original strand, 45936333 - 45936445
Alignment:
| Q |
204 |
tgtgatgagatatacgttgttggcgagggagagacacttcaaacaataagtgaaaaatgtggtgatccttacattgttgaagagaatccacatattcatg |
303 |
Q |
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|||||||||||||| ||||| || || || || ||||| | ||||| |||||||| |||||||| || | ||||| || |||||||||||| |||| |
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| T |
45936333 |
tgtgatgagatatatgttgtgggagaaggtgaaacactcaacacaatcagtgaaaagtgtggtgacccgtttattgtagagaggaatccacatatccatg |
45936432 |
T |
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| Q |
304 |
atcctgatgatgt |
316 |
Q |
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|||| |||||||| |
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| T |
45936433 |
atccagatgatgt |
45936445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 192 - 316
Target Start/End: Complemental strand, 42240294 - 42240170
Alignment:
| Q |
192 |
aacaacaaagtgtgtgatgagatatacgttgttggcgagggagagacacttcaaacaataagtgaaaaatgtggtgatccttacattgttgaagagaatc |
291 |
Q |
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|||||||||| ||||||||||||||| || ||| | || |||||||| ||||| |||||||||||||||||||||||||| | ||||| |||||||||| |
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| T |
42240294 |
aacaacaaagcgtgtgatgagatatatgtggttcgtgaaggagagactcttcatacaataagtgaaaaatgtggtgatccatttattgtagaagagaatc |
42240195 |
T |
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| Q |
292 |
cacatattcatgatcctgatgatgt |
316 |
Q |
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||||||||||||| || |||||||| |
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| T |
42240194 |
cacatattcatgacccagatgatgt |
42240170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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