View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4289_low_1 (Length: 580)
Name: NF4289_low_1
Description: NF4289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4289_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 125 - 564
Target Start/End: Complemental strand, 38053981 - 38053548
Alignment:
| Q |
125 |
ttattcctatgggcatcggtgagatttttccctcaaagagaaagataaaatataaagaaaatgagagattgagatttacggtggagattgttgcacatan |
224 |
Q |
| |
|
|||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38053981 |
ttattcctatggacattggtgagatttttccctcaaa----------aaatataaagaaaatgagagattgagatttacggtggagattgttgcacatat |
38053892 |
T |
|
| Q |
225 |
nnnnnnnnnnnnnnnnagaatttcatgtaaaagaatacattcccaattaattactcctatattcgtcacctaaaaataatgtcataaaaatgtgtctcac |
324 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38053891 |
atttttttttttttt-agaatttcatgtaaaagaatacattcccaatta----ctcctatattcgtcacctaaaaataatgtcataaaaatgtgtctcac |
38053797 |
T |
|
| Q |
325 |
ttttgtcnnnnnnnntaatataatttgtctcacaataataa----agagacnnnnnnnnnnnnnntgcatgtaatgtcactaattttgaacatcca---- |
416 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
38053796 |
ttttgtcaaaaaaaataaaataatttgtctcacaataataattaaagagacaaaaaaaaa-----tgcatgtaatgtcactaatcttgaacatccactca |
38053702 |
T |
|
| Q |
417 |
------aattgtagatatagcttggcttaggttctctttcttgttgcaattaaatatgctccaagacaaagattactttgtcacgttcaaagagcattta |
510 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
38053701 |
cgaccaaattgtagatatagcttggcttagattctctttcttgttgcaattaaatatgctccaagacaaagtttactttgtcacgttcaaagagcattta |
38053602 |
T |
|
| Q |
511 |
ttcaaataaatcaattacgtgtgtaaatgataaatgaagttggtttgaagaact |
564 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
38053601 |
ttcaaataaatcaattacgtgtgtagatgataaatgaagttggtttgaagaact |
38053548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 38054516 - 38054464
Alignment:
| Q |
11 |
gaaggaagaaattatgagtttgatgtgtgaattatgttacatgtatagttggc |
63 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
38054516 |
gaaggaagaaattatgagtttgatgtgtgaattctgttacatgtatagttggc |
38054464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 95 - 131
Target Start/End: Complemental strand, 38054409 - 38054373
Alignment:
| Q |
95 |
atggtaggttgacagtgagattcgcatgaattattcc |
131 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38054409 |
atggtaggttgacagtgagattcgcatgaattattcc |
38054373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University