View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4289_low_10 (Length: 238)

Name: NF4289_low_10
Description: NF4289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4289_low_10
NF4289_low_10
[»] chr1 (20 HSPs)
chr1 (1-223)||(26582828-26583064)
chr1 (80-125)||(44583769-44583814)
chr1 (81-121)||(43105692-43105732)
chr1 (80-119)||(2245789-2245828)
chr1 (80-124)||(84604-84648)
chr1 (80-124)||(11650056-11650100)
chr1 (80-124)||(24041111-24041155)
chr1 (80-125)||(5317687-5317732)
chr1 (80-117)||(40061007-40061044)
chr1 (83-124)||(43738367-43738408)
chr1 (80-117)||(44582890-44582927)
chr1 (80-117)||(50158417-50158454)
chr1 (80-124)||(6332164-6332208)
chr1 (80-124)||(9552440-9552484)
chr1 (80-124)||(12002244-12002288)
chr1 (80-124)||(15698861-15698905)
chr1 (80-112)||(28751518-28751550)
chr1 (80-124)||(38132278-38132322)
chr1 (80-124)||(48259964-48260008)
chr1 (80-124)||(48320100-48320144)
[»] chr3 (22 HSPs)
chr3 (80-154)||(19552509-19552583)
chr3 (80-125)||(43580473-43580518)
chr3 (80-121)||(1341030-1341071)
chr3 (80-125)||(5244584-5244629)
chr3 (80-125)||(32304015-32304060)
chr3 (80-125)||(34059874-34059919)
chr3 (80-125)||(36771677-36771722)
chr3 (80-121)||(45095555-45095596)
chr3 (80-124)||(2568113-2568157)
chr3 (80-124)||(3000751-3000795)
chr3 (80-124)||(15514836-15514880)
chr3 (80-124)||(26965609-26965653)
chr3 (80-124)||(46363121-46363165)
chr3 (80-124)||(51381720-51381764)
chr3 (81-124)||(44648512-44648555)
chr3 (80-125)||(790094-790139)
chr3 (80-117)||(25722571-25722608)
chr3 (80-117)||(43687996-43688033)
chr3 (80-124)||(83295-83339)
chr3 (80-124)||(25061703-25061747)
chr3 (80-124)||(37225705-37225749)
chr3 (80-124)||(50420258-50420302)
[»] chr4 (22 HSPs)
chr4 (80-125)||(47321138-47321183)
chr4 (80-124)||(31941553-31941597)
chr4 (80-125)||(6232147-6232192)
chr4 (80-125)||(6510112-6510157)
chr4 (80-125)||(21045150-21045195)
chr4 (80-121)||(45520570-45520611)
chr4 (80-124)||(22212336-22212380)
chr4 (80-124)||(35928486-35928530)
chr4 (80-124)||(50072276-50072320)
chr4 (80-124)||(52732594-52732638)
chr4 (80-117)||(28116247-28116284)
chr4 (80-125)||(34124289-34124334)
chr4 (80-125)||(38692408-38692453)
chr4 (80-117)||(45903518-45903555)
chr4 (80-124)||(1868211-1868255)
chr4 (80-124)||(15501258-15501302)
chr4 (80-124)||(19282523-19282567)
chr4 (80-124)||(29840070-29840114)
chr4 (80-124)||(37445655-37445699)
chr4 (80-116)||(44855245-44855281)
chr4 (80-124)||(55548336-55548380)
chr4 (80-124)||(56556366-56556410)
[»] chr7 (16 HSPs)
chr7 (80-124)||(3681033-3681077)
chr7 (80-124)||(28044242-28044286)
chr7 (80-125)||(18886667-18886712)
chr7 (80-125)||(22597228-22597273)
chr7 (80-121)||(40805026-40805067)
chr7 (80-125)||(41906044-41906089)
chr7 (80-124)||(18733452-18733496)
chr7 (80-124)||(31416862-31416906)
chr7 (80-124)||(40298846-40298890)
chr7 (80-117)||(5723009-5723046)
chr7 (80-121)||(19920382-19920423)
chr7 (80-125)||(36447712-36447757)
chr7 (80-125)||(36836057-36836102)
chr7 (80-117)||(42044090-42044127)
chr7 (80-125)||(43813455-43813500)
chr7 (80-124)||(48838776-48838820)
[»] chr5 (18 HSPs)
chr5 (80-124)||(34171163-34171207)
chr5 (80-121)||(28640084-28640125)
chr5 (80-124)||(27810345-27810389)
chr5 (80-124)||(31889741-31889785)
chr5 (80-124)||(33585085-33585129)
chr5 (80-124)||(36660426-36660470)
chr5 (81-124)||(12167693-12167736)
chr5 (80-125)||(793716-793761)
chr5 (80-125)||(14980149-14980194)
chr5 (80-125)||(15400169-15400214)
chr5 (80-117)||(33822613-33822650)
chr5 (80-124)||(166759-166803)
chr5 (80-124)||(7388291-7388335)
chr5 (80-124)||(7731703-7731747)
chr5 (80-124)||(28316712-28316756)
chr5 (80-124)||(31557445-31557489)
chr5 (80-124)||(38982255-38982299)
chr5 (80-124)||(42329656-42329700)
[»] chr8 (19 HSPs)
chr8 (80-123)||(30788934-30788977)
chr8 (80-171)||(2803348-2803436)
chr8 (80-121)||(8382588-8382629)
chr8 (80-117)||(32326836-32326873)
chr8 (80-125)||(38329140-38329185)
chr8 (80-125)||(45187395-45187440)
chr8 (80-124)||(1774170-1774214)
chr8 (80-124)||(7612496-7612540)
chr8 (80-124)||(11257540-11257584)
chr8 (80-124)||(29931342-29931386)
chr8 (80-124)||(36915365-36915409)
chr8 (81-124)||(3203325-3203368)
chr8 (80-122)||(3095614-3095656)
chr8 (80-117)||(16208955-16208992)
chr8 (80-125)||(22601133-22601178)
chr8 (80-117)||(34168316-34168353)
chr8 (80-124)||(9022393-9022437)
chr8 (80-124)||(32061534-32061578)
chr8 (80-124)||(42946120-42946164)
[»] chr6 (10 HSPs)
chr6 (80-178)||(1924774-1924870)
chr6 (80-125)||(30627088-30627133)
chr6 (80-124)||(4132085-4132129)
chr6 (80-124)||(32258720-32258764)
chr6 (80-117)||(3015921-3015958)
chr6 (80-124)||(4123965-4124009)
chr6 (80-124)||(29915539-29915583)
chr6 (80-124)||(29927205-29927249)
chr6 (80-124)||(30626867-30626911)
chr6 (80-124)||(31275752-31275796)
[»] chr2 (13 HSPs)
chr2 (80-121)||(14378334-14378375)
chr2 (80-125)||(33093365-33093410)
chr2 (83-124)||(45372645-45372686)
chr2 (80-124)||(34225771-34225815)
chr2 (80-124)||(43344331-43344375)
chr2 (80-124)||(45148062-45148106)
chr2 (80-122)||(7743401-7743443)
chr2 (80-121)||(4566233-4566274)
chr2 (80-125)||(24775186-24775231)
chr2 (80-125)||(29795300-29795345)
chr2 (80-121)||(42969900-42969941)
chr2 (80-124)||(4536572-4536616)
chr2 (80-124)||(41984416-41984460)
[»] scaffold0194 (1 HSPs)
scaffold0194 (80-124)||(8156-8200)
[»] scaffold0047 (1 HSPs)
scaffold0047 (80-124)||(70565-70609)
[»] scaffold0003 (1 HSPs)
scaffold0003 (80-124)||(321724-321768)


Alignment Details
Target: chr1 (Bit Score: 81; Significance: 3e-38; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 26583064 - 26582828
Alignment:
Q  1 caattctccaccaaaccaccatacagttcagttccacatgcaatccatcattctt------------------gagagaaaagtatcaagnnnnnnntta 82  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||                  |||||||||||   |||       |||    
T  26583064 caattctccaccaaaccaccatacagttcagttccacatccaatccatcattcttcataattccatcatttttgagagaaaagttcgaagaaaaaaatta 26582965  T
Q  83 aagttgtattgaaaatgtaaggtgacatttattttaaaacaaannnnnnnnagctaaaatgacactcatttttgaaacagatggagtataagataaaaaa 182  Q
    ||||||||||| |||||||| || ||||||||||||||||||         | ||||||||||||| |||||  ||||||||||||||||||||||||||    
T  26582964 aagttgtattggaaatgtaaagtaacatttattttaaaacaa---ttttttaactaaaatgacacttatttta-aaacagatggagtataagataaaaaa 26582869  T
Q  183 ttgaacttctagtgaatttttgaagtgctacgtccgtagtg 223  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  26582868 ttgaacttctagtgaatttttgaagtgctacgtccgtagtg 26582828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 80 - 125
Target Start/End: Complemental strand, 44583814 - 44583769
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaacaaa 125  Q
    ||||||||||||| |||||||||||||||||| |||||||||||||    
T  44583814 ttaaagttgtattaaaaatgtaaggtgacattcattttaaaacaaa 44583769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 81 - 121
Target Start/End: Original strand, 43105692 - 43105732
Alignment:
Q  81 taaagttgtattgaaaatgtaaggtgacatttattttaaaa 121  Q
    ||||||||||||||||||||||||||||||| |||||||||    
T  43105692 taaagttgtattgaaaatgtaaggtgacattcattttaaaa 43105732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 119
Target Start/End: Complemental strand, 2245828 - 2245789
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaa 119  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  2245828 ttaaagttgtattgaaaatgtaaggtgacattcattttaa 2245789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 124
Target Start/End: Original strand, 84604 - 84648
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaacaa 124  Q
    |||||||||||||| |||||||| |||||||| ||||||||||||    
T  84604 ttaaagttgtattggaaatgtaaagtgacattcattttaaaacaa 84648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 124
Target Start/End: Complemental strand, 11650100 - 11650056
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaacaa 124  Q
    ||||||||||||||||||||||| |||||||| ||||| ||||||    
T  11650100 ttaaagttgtattgaaaatgtaaagtgacattcattttgaaacaa 11650056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 124
Target Start/End: Original strand, 24041111 - 24041155
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaacaa 124  Q
    ||||||||||||||||||||||| |||||||| ||||| ||||||    
T  24041111 ttaaagttgtattgaaaatgtaaagtgacattcattttgaaacaa 24041155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 125
Target Start/End: Original strand, 5317687 - 5317732
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaacaaa 125  Q
    ||||||||||||||||| ||||| |||||||| ||||| |||||||    
T  5317687 ttaaagttgtattgaaattgtaaagtgacattcattttgaaacaaa 5317732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 117
Target Start/End: Original strand, 40061007 - 40061044
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttatttt 117  Q
    ||||||||||||||||||||||| |||||||| |||||    
T  40061007 ttaaagttgtattgaaaatgtaaagtgacattcatttt 40061044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 124
Target Start/End: Original strand, 43738367 - 43738408
Alignment:
Q  83 aagttgtattgaaaatgtaaggtgacatttattttaaaacaa 124  Q
    |||||||||||||||||| | |||||||| ||||||||||||    
T  43738367 aagttgtattgaaaatgtgaagtgacattcattttaaaacaa 43738408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 117
Target Start/End: Original strand, 44582890 - 44582927
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttatttt 117  Q
    |||||||||||||| |||||||| ||||||||||||||    
T  44582890 ttaaagttgtattggaaatgtaaagtgacatttatttt 44582927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 117
Target Start/End: Original strand, 50158417 - 50158454
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttatttt 117  Q
    ||||||||||||||||||||||| |||||||| |||||    
T  50158417 ttaaagttgtattgaaaatgtaaagtgacattcatttt 50158454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 124
Target Start/End: Complemental strand, 6332208 - 6332164
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaacaa 124  Q
    |||||||||| || ||||||||| |||||||| ||||||||||||    
T  6332208 ttaaagttgtgttaaaaatgtaaagtgacattcattttaaaacaa 6332164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 124
Target Start/End: Original strand, 9552440 - 9552484
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaacaa 124  Q
    |||||||||||||| ||||||||  ||||||| ||||||||||||    
T  9552440 ttaaagttgtattggaaatgtaaaatgacattcattttaaaacaa 9552484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 124
Target Start/End: Complemental strand, 12002288 - 12002244
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaacaa 124  Q
    |||||||||||||| ||||||||  ||||||| ||||||||||||    
T  12002288 ttaaagttgtattggaaatgtaaaatgacattcattttaaaacaa 12002244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 124
Target Start/End: Original strand, 15698861 - 15698905
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaacaa 124  Q
    |||||||||||||| |||| ||| |||||||| ||||||||||||    
T  15698861 ttaaagttgtattggaaatataaagtgacattcattttaaaacaa 15698905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 112
Target Start/End: Original strand, 28751518 - 28751550
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacattt 112  Q
    ||||||||||||||||||||||| |||||||||    
T  28751518 ttaaagttgtattgaaaatgtaaagtgacattt 28751550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 124
Target Start/End: Original strand, 38132278 - 38132322
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaacaa 124  Q
    |||||||||||||| |||||||| |||||||| ||||| ||||||    
T  38132278 ttaaagttgtattggaaatgtaaagtgacattcattttgaaacaa 38132322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 124
Target Start/End: Original strand, 48259964 - 48260008
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaacaa 124  Q
    |||||||||||||| |||||||| |||||||| ||||| ||||||    
T  48259964 ttaaagttgtattggaaatgtaaagtgacattcattttgaaacaa 48260008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 124
Target Start/End: Original strand, 48320100 - 48320144
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaacaa 124  Q
    ||||| ||||||||||||| ||| || ||||||||||||||||||    
T  48320100 ttaaatttgtattgaaaatataaagtaacatttattttaaaacaa 48320144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 80 - 154
Target Start/End: Complemental strand, 19552583 - 19552509
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaacaaannnnnnnnagctaaaatgacactcatttt 154  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||        ||||||||||||||| |||||    
T  19552583 ttaaagttgtattgaaaatgtaaagtgacattcattttaaaacaaattgtttttagctaaaatgacacttatttt 19552509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 80 - 125
Target Start/End: Complemental strand, 43580518 - 43580473
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaacaaa 125  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||    
T  43580518 ttaaagttgtattgaaaatgtaaagtgacatttattttgaaacaaa 43580473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 121
Target Start/End: Original strand, 1341030 - 1341071
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaa 121  Q
    ||||||||||||||||||||||| |||||||| |||||||||    
T  1341030 ttaaagttgtattgaaaatgtaaagtgacattcattttaaaa 1341071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 125
Target Start/End: Complemental strand, 5244629 - 5244584
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaacaaa 125  Q
    |||||||| |||| |||||||||||||||||| |||||||||||||    
T  5244629 ttaaagttatattaaaaatgtaaggtgacattcattttaaaacaaa 5244584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 125
Target Start/End: Original strand, 32304015 - 32304060
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaacaaa 125  Q
    ||||||||||||||||||||||| |||||||| |||| ||||||||    
T  32304015 ttaaagttgtattgaaaatgtaaagtgacattcatttcaaaacaaa 32304060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 125
Target Start/End: Complemental strand, 34059919 - 34059874
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaacaaa 125  Q
    |||||||||||||||||||||||  ||||||| |||||||||||||    
T  34059919 ttaaagttgtattgaaaatgtaaaatgacattcattttaaaacaaa 34059874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 125
Target Start/End: Original strand, 36771677 - 36771722
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaacaaa 125  Q
    |||||||||||||| |||||||| |||||||| |||||||||||||    
T  36771677 ttaaagttgtattgtaaatgtaaagtgacattcattttaaaacaaa 36771722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 121
Target Start/End: Complemental strand, 45095596 - 45095555
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaa 121  Q
    ||||||||||||||||||||||| |||||||| |||||||||    
T  45095596 ttaaagttgtattgaaaatgtaaagtgacattcattttaaaa 45095555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 124
Target Start/End: Original strand, 2568113 - 2568157
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaacaa 124  Q
    ||||||||||||||||||||||| || ||||| ||||||||||||    
T  2568113 ttaaagttgtattgaaaatgtaaagtaacattcattttaaaacaa 2568157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 124
Target Start/End: Complemental strand, 3000795 - 3000751
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaacaa 124  Q
    ||||||||||||||||||||||| || ||||| ||||||||||||    
T  3000795 ttaaagttgtattgaaaatgtaaagtaacattcattttaaaacaa 3000751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 124
Target Start/End: Original strand, 15514836 - 15514880
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaacaa 124  Q
    |||||||||||||| |||||||| ||||||||||||| |||||||    
T  15514836 ttaaagttgtattggaaatgtaaagtgacatttatttgaaaacaa 15514880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 124
Target Start/End: Original strand, 26965609 - 26965653
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaacaa 124  Q
    ||||||||||||||||||||||| |||||||| ||||| ||||||    
T  26965609 ttaaagttgtattgaaaatgtaaagtgacattcattttgaaacaa 26965653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 124
Target Start/End: Original strand, 46363121 - 46363165
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaacaa 124  Q
    ||||||||||||||||||||||| |||||||| ||||| ||||||    
T  46363121 ttaaagttgtattgaaaatgtaaagtgacattcattttgaaacaa 46363165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 124
Target Start/End: Complemental strand, 51381764 - 51381720
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaacaa 124  Q
    |||||||||||||| |||||||| |||||||||||||| ||||||    
T  51381764 ttaaagttgtattgtaaatgtaaagtgacatttattttgaaacaa 51381720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 81 - 124
Target Start/End: Original strand, 44648512 - 44648555
Alignment:
Q  81 taaagttgtattgaaaatgtaaggtgacatttattttaaaacaa 124  Q
    ||||||||||||| |||||||| |||||||| ||||||||||||    
T  44648512 taaagttgtattggaaatgtaaagtgacattcattttaaaacaa 44648555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 125
Target Start/End: Complemental strand, 790139 - 790094
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaacaaa 125  Q
    |||||||||||||| |||||||| |||||||| ||||| |||||||    
T  790139 ttaaagttgtattggaaatgtaaagtgacattaattttgaaacaaa 790094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 117
Target Start/End: Original strand, 25722571 - 25722608
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttatttt 117  Q
    ||||||||||||||||||||||| |||||||| |||||    
T  25722571 ttaaagttgtattgaaaatgtaaagtgacattcatttt 25722608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 117
Target Start/End: Original strand, 43687996 - 43688033
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttatttt 117  Q
    |||||||||||||| |||||||| ||||||||||||||    
T  43687996 ttaaagttgtattggaaatgtaaagtgacatttatttt 43688033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 124
Target Start/End: Complemental strand, 83339 - 83295
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaacaa 124  Q
    |||||||||||||||||||||||  ||||||| ||||| ||||||    
T  83339 ttaaagttgtattgaaaatgtaaaatgacattcattttgaaacaa 83295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 124
Target Start/End: Complemental strand, 25061747 - 25061703
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaacaa 124  Q
    |||||||||||||| |||||||| ||| |||| ||||||||||||    
T  25061747 ttaaagttgtattggaaatgtaaagtggcattcattttaaaacaa 25061703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 124
Target Start/End: Original strand, 37225705 - 37225749
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaacaa 124  Q
    |||||||||||||| |||||||| |||||||| ||||| ||||||    
T  37225705 ttaaagttgtattggaaatgtaaagtgacattcattttgaaacaa 37225749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 124
Target Start/End: Complemental strand, 50420302 - 50420258
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaacaa 124  Q
    ||||||||||||| |||||||||  ||||||||||||| ||||||    
T  50420302 ttaaagttgtattaaaaatgtaaaatgacatttatttttaaacaa 50420258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 80 - 125
Target Start/End: Complemental strand, 47321183 - 47321138
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaacaaa 125  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||    
T  47321183 ttaaagttgtattgaaaatgtaaagtgacattcattttaaaacaaa 47321138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 80 - 124
Target Start/End: Complemental strand, 31941597 - 31941553
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaacaa 124  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||    
T  31941597 ttaaagttgtattgaaaatgtaaagtgacattcattttaaaacaa 31941553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 125
Target Start/End: Original strand, 6232147 - 6232192
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaacaaa 125  Q
    |||||||||||||||||||||||  ||||||||||||| |||||||    
T  6232147 ttaaagttgtattgaaaatgtaaattgacatttattttgaaacaaa 6232192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 125
Target Start/End: Complemental strand, 6510157 - 6510112
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaacaaa 125  Q
    ||||||||||||||||||| ||| |||||||||||||| |||||||    
T  6510157 ttaaagttgtattgaaaatataaagtgacatttattttgaaacaaa 6510112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 125
Target Start/End: Complemental strand, 21045195 - 21045150
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaacaaa 125  Q
    ||||||||||||||||||||||| |||||||| ||||| |||||||    
T  21045195 ttaaagttgtattgaaaatgtaaagtgacattcattttgaaacaaa 21045150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 121
Target Start/End: Original strand, 45520570 - 45520611
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaa 121  Q
    ||||||||||||||||||||||| |||||||| |||||||||    
T  45520570 ttaaagttgtattgaaaatgtaaagtgacattcattttaaaa 45520611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 124
Target Start/End: Complemental strand, 22212380 - 22212336
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaacaa 124  Q
    |||||||| ||||| ||||||||||||||||| ||||||||||||    
T  22212380 ttaaagttatattggaaatgtaaggtgacattcattttaaaacaa 22212336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 124
Target Start/End: Complemental strand, 35928530 - 35928486
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaacaa 124  Q
    ||||||||||||||||||||||| |||| ||||||||| ||||||    
T  35928530 ttaaagttgtattgaaaatgtaaagtgatatttattttgaaacaa 35928486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 124
Target Start/End: Complemental strand, 50072320 - 50072276
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaacaa 124  Q
    ||||||||||||||||||||||| |||||||| ||||| ||||||    
T  50072320 ttaaagttgtattgaaaatgtaaagtgacattcattttgaaacaa 50072276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 124
Target Start/End: Complemental strand, 52732638 - 52732594
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaacaa 124  Q
    |||||||||||||| |||||||| |||||||| ||||||||||||    
T  52732638 ttaaagttgtattggaaatgtaaagtgacattcattttaaaacaa 52732594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 117
Target Start/End: Complemental strand, 28116284 - 28116247
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttatttt 117  Q
    |||||||||||||| |||||||| ||||||||||||||    
T  28116284 ttaaagttgtattggaaatgtaaagtgacatttatttt 28116247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 125
Target Start/End: Complemental strand, 34124334 - 34124289
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaacaaa 125  Q
    ||||||||| ||||||||||||| | |||||| |||||||||||||    
T  34124334 ttaaagttgcattgaaaatgtaaagcgacattcattttaaaacaaa 34124289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 125
Target Start/End: Complemental strand, 38692453 - 38692408
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaacaaa 125  Q
    ||||||||  ||||||||||||| |||||||| |||||||||||||    
T  38692453 ttaaagtttaattgaaaatgtaaagtgacattcattttaaaacaaa 38692408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 117
Target Start/End: Original strand, 45903518 - 45903555
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttatttt 117  Q
    ||||||||||||||||||||||| |||||||| |||||    
T  45903518 ttaaagttgtattgaaaatgtaaagtgacattcatttt 45903555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 124
Target Start/End: Original strand, 1868211 - 1868255
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaacaa 124  Q
    ||||||||| ||||||||||||| |||||||| ||||| ||||||    
T  1868211 ttaaagttgcattgaaaatgtaaagtgacattcattttgaaacaa 1868255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 124
Target Start/End: Original strand, 15501258 - 15501302
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaacaa 124  Q
    |||||||||||||| |||||||| |||||||| ||||| ||||||    
T  15501258 ttaaagttgtattggaaatgtaaagtgacattcattttcaaacaa 15501302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 124
Target Start/End: Original strand, 19282523 - 19282567
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaacaa 124  Q
    |||||||||||||| |||||||| |||||||| ||||| ||||||    
T  19282523 ttaaagttgtattggaaatgtaaagtgacattcattttgaaacaa 19282567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 124
Target Start/End: Complemental strand, 29840114 - 29840070
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaacaa 124  Q
    |||||||||||||| |||||||| |||||||| ||||| ||||||    
T  29840114 ttaaagttgtattggaaatgtaaagtgacattcattttgaaacaa 29840070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 124
Target Start/End: Complemental strand, 37445699 - 37445655
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaacaa 124  Q
    ||||||||||||| |||||||||  ||||||| ||||||||||||    
T  37445699 ttaaagttgtattaaaaatgtaaaatgacattcattttaaaacaa 37445655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 116
Target Start/End: Complemental strand, 44855281 - 44855245
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattt 116  Q
    |||||||||||||| |||||||| |||||||||||||    
T  44855281 ttaaagttgtattggaaatgtaaagtgacatttattt 44855245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 124
Target Start/End: Original strand, 55548336 - 55548380
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaacaa 124  Q
    ||||||||| ||||||||||||| |||||| ||||||| ||||||    
T  55548336 ttaaagttgcattgaaaatgtaaagtgacacttattttgaaacaa 55548380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 124
Target Start/End: Original strand, 56556366 - 56556410
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaacaa 124  Q
    |||||||||||||| |||||||| |||||||| ||||| ||||||    
T  56556366 ttaaagttgtattggaaatgtaaagtgacattcattttgaaacaa 56556410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 80 - 124
Target Start/End: Original strand, 3681033 - 3681077
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaacaa 124  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||    
T  3681033 ttaaagttgtattgaaaatgtaaagtgacattcattttaaaacaa 3681077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 80 - 124
Target Start/End: Original strand, 28044242 - 28044286
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaacaa 124  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||    
T  28044242 ttaaagttgtattgaaaatgtaaagtgacattcattttaaaacaa 28044286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 125
Target Start/End: Complemental strand, 18886712 - 18886667
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaacaaa 125  Q
    ||||||||||||||||||||||| |||| ||| |||||||||||||    
T  18886712 ttaaagttgtattgaaaatgtaaagtgagattcattttaaaacaaa 18886667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 125
Target Start/End: Complemental strand, 22597273 - 22597228
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaacaaa 125  Q
    ||||||||||||||||||||||| |||||||| ||||| |||||||    
T  22597273 ttaaagttgtattgaaaatgtaaagtgacattcattttgaaacaaa 22597228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 121
Target Start/End: Complemental strand, 40805067 - 40805026
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaa 121  Q
    |||||||||||||| |||||||| ||||||||||||||||||    
T  40805067 ttaaagttgtattgtaaatgtaaagtgacatttattttaaaa 40805026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 125
Target Start/End: Original strand, 41906044 - 41906089
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaacaaa 125  Q
    |||||||||||||  |||||||| ||||||||||||||||||||||    
T  41906044 ttaaagttgtattagaaatgtaaagtgacatttattttaaaacaaa 41906089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 124
Target Start/End: Complemental strand, 18733496 - 18733452
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaacaa 124  Q
    ||||||||||||||||||||||| |||||||| ||||| ||||||    
T  18733496 ttaaagttgtattgaaaatgtaaagtgacattcattttgaaacaa 18733452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 124
Target Start/End: Original strand, 31416862 - 31416906
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaacaa 124  Q
    ||||||||||||||||||||||| |||| ||| ||||||||||||    
T  31416862 ttaaagttgtattgaaaatgtaaagtgatattcattttaaaacaa 31416906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 124
Target Start/End: Complemental strand, 40298890 - 40298846
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaacaa 124  Q
    ||||||||||||||||||||||| |||||||| ||||| ||||||    
T  40298890 ttaaagttgtattgaaaatgtaaagtgacattcattttgaaacaa 40298846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 117
Target Start/End: Complemental strand, 5723046 - 5723009
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttatttt 117  Q
    ||||||||||||||||||||||| |||||||| |||||    
T  5723046 ttaaagttgtattgaaaatgtaaagtgacattcatttt 5723009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 121
Target Start/End: Original strand, 19920382 - 19920423
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaa 121  Q
    |||||||||||||| |||||||| |||||||| |||||||||    
T  19920382 ttaaagttgtattggaaatgtaaagtgacattcattttaaaa 19920423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 125
Target Start/End: Original strand, 36447712 - 36447757
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaacaaa 125  Q
    ||||||||||||||||||| ||| |||| ||| |||||||||||||    
T  36447712 ttaaagttgtattgaaaatataaagtgatattcattttaaaacaaa 36447757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 125
Target Start/End: Complemental strand, 36836102 - 36836057
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaacaaa 125  Q
    ||||||||||||||||||||||| | |||||| ||||| |||||||    
T  36836102 ttaaagttgtattgaaaatgtaaagcgacattcattttgaaacaaa 36836057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 117
Target Start/End: Original strand, 42044090 - 42044127
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttatttt 117  Q
    ||||||||||||||||||||||| |||||||| |||||    
T  42044090 ttaaagttgtattgaaaatgtaaagtgacattaatttt 42044127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 125
Target Start/End: Original strand, 43813455 - 43813500
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaacaaa 125  Q
    |||||||||||||| |||| ||| |||||||| |||||||||||||    
T  43813455 ttaaagttgtattggaaatataaagtgacattcattttaaaacaaa 43813500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 124
Target Start/End: Original strand, 48838776 - 48838820
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaacaa 124  Q
    |||||||| |||||||||| |||  ||||||||||||||||||||    
T  48838776 ttaaagttatattgaaaatataaattgacatttattttaaaacaa 48838820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 80 - 124
Target Start/End: Complemental strand, 34171207 - 34171163
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaacaa 124  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||    
T  34171207 ttaaagttgtattgaaaatgtaaagtgacattcattttaaaacaa 34171163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 121
Target Start/End: Complemental strand, 28640125 - 28640084
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaa 121  Q
    ||||||||| ||||||||||||| ||||||||||||||||||    
T  28640125 ttaaagttgaattgaaaatgtaaagtgacatttattttaaaa 28640084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 124
Target Start/End: Complemental strand, 27810389 - 27810345
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaacaa 124  Q
    ||||||||||||||||||||||| |||||||| ||||| ||||||    
T  27810389 ttaaagttgtattgaaaatgtaaagtgacattcattttgaaacaa 27810345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 124
Target Start/End: Complemental strand, 31889785 - 31889741
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaacaa 124  Q
    |||||||||||||| |||||||| |||||||||||||| ||||||    
T  31889785 ttaaagttgtattggaaatgtaaagtgacatttattttgaaacaa 31889741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 124
Target Start/End: Original strand, 33585085 - 33585129
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaacaa 124  Q
    ||||||||||||||||||||||| ||||| || ||||||||||||    
T  33585085 ttaaagttgtattgaaaatgtaaagtgacgttcattttaaaacaa 33585129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 124
Target Start/End: Complemental strand, 36660470 - 36660426
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaacaa 124  Q
    ||||||||||||||||||||||| |||||||| ||||| ||||||    
T  36660470 ttaaagttgtattgaaaatgtaaagtgacattcattttgaaacaa 36660426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 81 - 124
Target Start/End: Original strand, 12167693 - 12167736
Alignment:
Q  81 taaagttgtattgaaaatgtaaggtgacatttattttaaaacaa 124  Q
    |||||||||||||||||||||  |||||||| ||||||||||||    
T  12167693 taaagttgtattgaaaatgtagagtgacattcattttaaaacaa 12167736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 125
Target Start/End: Original strand, 793716 - 793761
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaacaaa 125  Q
    |||||||||||||| |||||||| |||||||| ||||| |||||||    
T  793716 ttaaagttgtattggaaatgtaaagtgacattcattttgaaacaaa 793761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 125
Target Start/End: Original strand, 14980149 - 14980194
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaacaaa 125  Q
    |||||||||||||| |||||||| |||||||| ||||| |||||||    
T  14980149 ttaaagttgtattggaaatgtaaagtgacattcattttgaaacaaa 14980194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 125
Target Start/End: Complemental strand, 15400214 - 15400169
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaacaaa 125  Q
    |||||||||||||| |||||||| |||||||| |||||||| ||||    
T  15400214 ttaaagttgtattggaaatgtaaagtgacattcattttaaagcaaa 15400169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 117
Target Start/End: Original strand, 33822613 - 33822650
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttatttt 117  Q
    ||||||||||||||||||||||| |||||||| |||||    
T  33822613 ttaaagttgtattgaaaatgtaaagtgacattcatttt 33822650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 124
Target Start/End: Original strand, 166759 - 166803
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaacaa 124  Q
    |||||||||||||| |||||||| |||||||| ||||| ||||||    
T  166759 ttaaagttgtattggaaatgtaaagtgacattcattttgaaacaa 166803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 124
Target Start/End: Original strand, 7388291 - 7388335
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaacaa 124  Q
    ||||| ||||||||||||| ||| |||||||| ||||||||||||    
T  7388291 ttaaaattgtattgaaaatataaagtgacattcattttaaaacaa 7388335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 124
Target Start/End: Original strand, 7731703 - 7731747
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaacaa 124  Q
    |||||||||| |||||||| ||| |||||||| ||||||||||||    
T  7731703 ttaaagttgttttgaaaatataaagtgacattcattttaaaacaa 7731747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 124
Target Start/End: Complemental strand, 28316756 - 28316712
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaacaa 124  Q
    ||||||||||||||||||| |||  ||||||||||||| ||||||    
T  28316756 ttaaagttgtattgaaaatataaaatgacatttattttgaaacaa 28316712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 124
Target Start/End: Original strand, 31557445 - 31557489
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaacaa 124  Q
    |||||||||||||||||||||||  ||||||| ||||| ||||||    
T  31557445 ttaaagttgtattgaaaatgtaaaatgacattcattttgaaacaa 31557489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 124
Target Start/End: Original strand, 38982255 - 38982299
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaacaa 124  Q
    |||||||||||||| |||| ||| |||||||| ||||||||||||    
T  38982255 ttaaagttgtattggaaatataaagtgacattcattttaaaacaa 38982299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 124
Target Start/End: Original strand, 42329656 - 42329700
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaacaa 124  Q
    |||||||||||||| |||||||| |||||||| ||||| ||||||    
T  42329656 ttaaagttgtattggaaatgtaaagtgacattcattttgaaacaa 42329700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 123
Target Start/End: Complemental strand, 30788977 - 30788934
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaaca 123  Q
    |||||||||||||||| |||||| ||||||||||||||||||||    
T  30788977 ttaaagttgtattgaatatgtaaagtgacatttattttaaaaca 30788934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 80 - 171
Target Start/End: Original strand, 2803348 - 2803436
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaacaaannnnnnnnagctaaaatgacactcatttttgaaacagatggagtat 171  Q
    ||||| ||||||||||||||||| |||||||||||||| |||||||        ||||||||||||||||| || |||||| ||||||||||    
T  2803348 ttaaaattgtattgaaaatgtaaagtgacatttattttgaaacaaa--ttttttagctaaaatgacactca-ttatgaaacggatggagtat 2803436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 121
Target Start/End: Original strand, 8382588 - 8382629
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaa 121  Q
    ||||||||||||||||||||||| |||||||| |||||||||    
T  8382588 ttaaagttgtattgaaaatgtaaagtgacattcattttaaaa 8382629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 117
Target Start/End: Original strand, 32326836 - 32326873
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttatttt 117  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  32326836 ttaaagttgtattgaaaatgtaaagtgacatttatttt 32326873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 125
Target Start/End: Original strand, 38329140 - 38329185
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaacaaa 125  Q
    ||||||||||||||||||| ||| |||||||| |||||||||||||    
T  38329140 ttaaagttgtattgaaaatataaagtgacattcattttaaaacaaa 38329185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 125
Target Start/End: Original strand, 45187395 - 45187440
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaacaaa 125  Q
    ||||||||||||||||||| ||| |||||||||||||| |||||||    
T  45187395 ttaaagttgtattgaaaatataaagtgacatttattttgaaacaaa 45187440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 124
Target Start/End: Original strand, 1774170 - 1774214
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaacaa 124  Q
    |||||||||||||||||||||||  ||||||| ||||||||||||    
T  1774170 ttaaagttgtattgaaaatgtaaattgacattcattttaaaacaa 1774214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 124
Target Start/End: Complemental strand, 7612540 - 7612496
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaacaa 124  Q
    |||| |||||||||||||||||| |||||||| ||||||||||||    
T  7612540 ttaatgttgtattgaaaatgtaaagtgacattcattttaaaacaa 7612496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 124
Target Start/End: Complemental strand, 11257584 - 11257540
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaacaa 124  Q
    ||||||||||||| ||||||||| |||||||| ||||||||||||    
T  11257584 ttaaagttgtattaaaaatgtaaagtgacattcattttaaaacaa 11257540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 124
Target Start/End: Original strand, 29931342 - 29931386
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaacaa 124  Q
    |||||||||||||| |||||||| |||| ||||||||||||||||    
T  29931342 ttaaagttgtattggaaatgtaaagtgatatttattttaaaacaa 29931386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 124
Target Start/End: Complemental strand, 36915409 - 36915365
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaacaa 124  Q
    ||||||||||||||||||||||| |||||||| ||||| ||||||    
T  36915409 ttaaagttgtattgaaaatgtaaagtgacattcattttgaaacaa 36915365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 81 - 124
Target Start/End: Complemental strand, 3203368 - 3203325
Alignment:
Q  81 taaagttgtattgaaaatgtaaggtgacatttattttaaaacaa 124  Q
    |||||||| ||||||||||||| |||||||||||||| ||||||    
T  3203368 taaagttgcattgaaaatgtaaagtgacatttattttgaaacaa 3203325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 122
Target Start/End: Original strand, 3095614 - 3095656
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaac 122  Q
    ||||||||||||||||||||||| || ||||| ||||||||||    
T  3095614 ttaaagttgtattgaaaatgtaaagtaacattcattttaaaac 3095656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 117
Target Start/End: Complemental strand, 16208992 - 16208955
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttatttt 117  Q
    ||||||||||||||||||||||| |||||||| |||||    
T  16208992 ttaaagttgtattgaaaatgtaaagtgacattcatttt 16208955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 125
Target Start/End: Complemental strand, 22601178 - 22601133
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaacaaa 125  Q
    |||||||||||||| |||||||| |||||||| ||||| |||||||    
T  22601178 ttaaagttgtattggaaatgtaaagtgacattcattttgaaacaaa 22601133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 117
Target Start/End: Original strand, 34168316 - 34168353
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttatttt 117  Q
    ||||||||||||||||||||||| |||||||| |||||    
T  34168316 ttaaagttgtattgaaaatgtaaagtgacattcatttt 34168353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 124
Target Start/End: Complemental strand, 9022437 - 9022393
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaacaa 124  Q
    |||||||||||||| ||| |||| |||||||| ||||||||||||    
T  9022437 ttaaagttgtattggaaacgtaaagtgacattcattttaaaacaa 9022393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 124
Target Start/End: Original strand, 32061534 - 32061578
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaacaa 124  Q
    ||||| |||||| |||||||||| |||||||| ||||||||||||    
T  32061534 ttaaatttgtatagaaaatgtaaagtgacattcattttaaaacaa 32061578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 124
Target Start/End: Complemental strand, 42946164 - 42946120
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaacaa 124  Q
    ||||||||||||| |||||||||  ||||||| ||||||||||||    
T  42946164 ttaaagttgtattaaaaatgtaaaatgacattcattttaaaacaa 42946120  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 80 - 178
Target Start/End: Original strand, 1924774 - 1924870
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaacaaannnnnnnnagctaaaatgacactcatttttgaaacagatggagtataagataa 178  Q
    |||||||||||||||||||||||  ||||||| |||||||||||||         |||||| ||||||||| |||||||||||| |||||||| |||||    
T  1924774 ttaaagttgtattgaaaatgtaaaatgacattcattttaaaacaaatttttttg-gctaaagtgacactca-ttttgaaacagagggagtatatgataa 1924870  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 125
Target Start/End: Complemental strand, 30627133 - 30627088
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaacaaa 125  Q
    ||||||||||||||||||| ||| |||||||||||||| |||||||    
T  30627133 ttaaagttgtattgaaaatataaagtgacatttattttgaaacaaa 30627088  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 124
Target Start/End: Original strand, 4132085 - 4132129
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaacaa 124  Q
    ||||||||||||| ||||||||| |||||||| ||||||||||||    
T  4132085 ttaaagttgtattaaaaatgtaaagtgacattcattttaaaacaa 4132129  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 124
Target Start/End: Complemental strand, 32258764 - 32258720
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaacaa 124  Q
    ||||||||||||||||||||||| |||||||| ||||| ||||||    
T  32258764 ttaaagttgtattgaaaatgtaaagtgacattcattttgaaacaa 32258720  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 117
Target Start/End: Complemental strand, 3015958 - 3015921
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttatttt 117  Q
    ||||||||||||||||||||||| |||||||| |||||    
T  3015958 ttaaagttgtattgaaaatgtaaagtgacattcatttt 3015921  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 124
Target Start/End: Original strand, 4123965 - 4124009
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaacaa 124  Q
    ||||||||||||| ||||||||| |||||||| ||||| ||||||    
T  4123965 ttaaagttgtattaaaaatgtaaagtgacattcattttgaaacaa 4124009  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 124
Target Start/End: Complemental strand, 29915583 - 29915539
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaacaa 124  Q
    |||||||||||||| |||||||| |||||||| ||||| ||||||    
T  29915583 ttaaagttgtattggaaatgtaaagtgacattcattttgaaacaa 29915539  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 124
Target Start/End: Complemental strand, 29927249 - 29927205
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaacaa 124  Q
    |||||||||||||| |||||||| |||||||| ||||| ||||||    
T  29927249 ttaaagttgtattggaaatgtaaagtgacattcattttgaaacaa 29927205  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 124
Target Start/End: Complemental strand, 30626911 - 30626867
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaacaa 124  Q
    ||||||||||||||||||||||| || | ||||||||| ||||||    
T  30626911 ttaaagttgtattgaaaatgtaaagtaatatttattttgaaacaa 30626867  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 124
Target Start/End: Original strand, 31275752 - 31275796
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaacaa 124  Q
    |||||||||||||| |||||||| |||||||| ||||| ||||||    
T  31275752 ttaaagttgtattggaaatgtaaagtgacattcattttgaaacaa 31275796  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 121
Target Start/End: Original strand, 14378334 - 14378375
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaa 121  Q
    ||||||||||||||||||||||| |||||||| |||||||||    
T  14378334 ttaaagttgtattgaaaatgtaaagtgacattcattttaaaa 14378375  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 125
Target Start/End: Complemental strand, 33093410 - 33093365
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaacaaa 125  Q
    ||||||||||||||||||||||| |||||||| ||||| |||||||    
T  33093410 ttaaagttgtattgaaaatgtaaagtgacattcattttgaaacaaa 33093365  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 124
Target Start/End: Original strand, 45372645 - 45372686
Alignment:
Q  83 aagttgtattgaaaatgtaaggtgacatttattttaaaacaa 124  Q
    |||||||||||||||||||| |||||||| ||||||||||||    
T  45372645 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 45372686  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 124
Target Start/End: Complemental strand, 34225815 - 34225771
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaacaa 124  Q
    ||||||||||||||||||||||| |||||||| ||||| ||||||    
T  34225815 ttaaagttgtattgaaaatgtaaagtgacattcattttgaaacaa 34225771  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 124
Target Start/End: Original strand, 43344331 - 43344375
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaacaa 124  Q
    ||||||||||||||||||| |||||||||||| ||||| ||||||    
T  43344331 ttaaagttgtattgaaaatataaggtgacattcattttgaaacaa 43344375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 124
Target Start/End: Original strand, 45148062 - 45148106
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaacaa 124  Q
    |||||||| |||||||||||||| |||||||| ||||||||||||    
T  45148062 ttaaagttttattgaaaatgtaaagtgacattcattttaaaacaa 45148106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 122
Target Start/End: Complemental strand, 7743443 - 7743401
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaac 122  Q
    |||||||||||||| |||||||| |||||||| ||||||||||    
T  7743443 ttaaagttgtattggaaatgtaaagtgacattcattttaaaac 7743401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 121
Target Start/End: Original strand, 4566233 - 4566274
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaa 121  Q
    ||||||||||||| ||||||||| ||||||| ||||||||||    
T  4566233 ttaaagttgtattaaaaatgtaaagtgacatatattttaaaa 4566274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 125
Target Start/End: Complemental strand, 24775231 - 24775186
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaacaaa 125  Q
    ||||| ||||||||||||||||| |||||| | |||||||||||||    
T  24775231 ttaaaattgtattgaaaatgtaaagtgacaatcattttaaaacaaa 24775186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 125
Target Start/End: Original strand, 29795300 - 29795345
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaacaaa 125  Q
    |||||||||||||| |||||||| |||||||| ||||| |||||||    
T  29795300 ttaaagttgtattggaaatgtaaagtgacattcattttgaaacaaa 29795345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 121
Target Start/End: Complemental strand, 42969941 - 42969900
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaa 121  Q
    ||||||| ||||| ||||||||| ||||||||||||||||||    
T  42969941 ttaaagtggtattaaaaatgtaaagtgacatttattttaaaa 42969900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 124
Target Start/End: Complemental strand, 4536616 - 4536572
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaacaa 124  Q
    |||||||||||||| |||||||| |||||||| ||||| ||||||    
T  4536616 ttaaagttgtattggaaatgtaaagtgacattcattttgaaacaa 4536572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 124
Target Start/End: Complemental strand, 41984460 - 41984416
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaacaa 124  Q
    ||||||||||||||||||||||| | || ||||||||| ||||||    
T  41984460 ttaaagttgtattgaaaatgtaaagcgatatttattttgaaacaa 41984416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 124
Target Start/End: Complemental strand, 8200 - 8156
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaacaa 124  Q
    |||||||||||||||||||||||  ||||||| ||||| ||||||    
T  8200 ttaaagttgtattgaaaatgtaaattgacattcattttgaaacaa 8156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 124
Target Start/End: Original strand, 70565 - 70609
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaacaa 124  Q
    ||||||||| ||||||||||||| |||||||| ||||| ||||||    
T  70565 ttaaagttgcattgaaaatgtaaagtgacattcattttgaaacaa 70609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 124
Target Start/End: Complemental strand, 321768 - 321724
Alignment:
Q  80 ttaaagttgtattgaaaatgtaaggtgacatttattttaaaacaa 124  Q
    |||||||||||||| |||||||| | |||||| ||||||||||||    
T  321768 ttaaagttgtattggaaatgtaaagcgacattcattttaaaacaa 321724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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