View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4289_low_14 (Length: 206)
Name: NF4289_low_14
Description: NF4289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4289_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 11 - 194
Target Start/End: Complemental strand, 43560124 - 43559941
Alignment:
| Q |
11 |
atcacagaaacaacagtaccatctatgcaaataccatcaattacatcacatggttcagcatttctaataaccgattcgagttactatgatgataatggct |
110 |
Q |
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| T |
43560124 |
atcacagaaacaacagtaccatctatgcaaataccatcaattacatcacatggttcagcatttctaataactgattcgagttactatgatgataatggct |
43560025 |
T |
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| Q |
111 |
taacagaagcttcaagagaaattttcaccagcaagcaagcattggaccctttgttctgctatgatttccaatctggttataact |
194 |
Q |
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| T |
43560024 |
taacagaagcttcaagagaaattttcaccagcaagcaagcattggaccctttgttctgctatgatttccaatctggttataact |
43559941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 17 - 184
Target Start/End: Complemental strand, 1992697 - 1992527
Alignment:
| Q |
17 |
gaaacaacagtaccatctatgcaaataccatcaattacatcacatggttcagcatttctaataaccgattcgagttactatgatgataatggcttaacag |
116 |
Q |
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|||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
1992697 |
gaaacaacagcaccacctatgcaaataccatcagttacatcacatggttcagcatttctaataaccgattcgagttactatgatgataatggtttaacag |
1992598 |
T |
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| Q |
117 |
aagcttcaagagaaattttcaccagca---agcaagcattggaccctttgttctgctatgatttccaatct |
184 |
Q |
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| T |
1992597 |
aagcttcaagagaaattttcaccaataaacaacaagcattagaccctttgttctgctatgatttccaatct |
1992527 |
T |
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