View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4289_low_3 (Length: 446)
Name: NF4289_low_3
Description: NF4289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4289_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 410; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 19 - 436
Target Start/End: Original strand, 38121372 - 38121789
Alignment:
| Q |
19 |
atagccttgtaagagttctattaaaaatcaaatagcttgtctgaaaatactaaaataacattgccacagtaaagtttatgacagatttgcaatcaaacct |
118 |
Q |
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| T |
38121372 |
atagccttgtaagagttctattaaaaatcaaatagcttgtctgaaaatactaaaataacattgccacagtaaagtttatgacagatttgcaatcaaacct |
38121471 |
T |
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| Q |
119 |
gatgcaaaagattctgatgggttagcataacacctttaggatttccagtagtaccacttgtgtacacaagagtagcaatgtcatccaattttattgtttc |
218 |
Q |
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| T |
38121472 |
gatgcaaaagattctgatgggttagcataacacctttaggatttccagtagtaccacttgtgtacacaagagtagcaatgtcatccaattttattgtttc |
38121571 |
T |
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| Q |
219 |
aaacatatagtgttctcctgcaatcacattgtagatgagtttgttgtgaacctgattactgttccttttgatgattaagagaaagactaataggtatgaa |
318 |
Q |
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| T |
38121572 |
aaagatatagtgttctcctgcaatcacattgtagatgagtttgttgtgaacctgattactgttccttttgatgattaagagaaagactaataggtatgaa |
38121671 |
T |
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| Q |
319 |
tgtatattatagagaaggtgcaggtggcatactagcatcatcggaggtgtgcaatgccctgcgactttgacgcccaaaatttatgacttccatgaatgta |
418 |
Q |
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| T |
38121672 |
tgtatattacagagaaggtgcaggtggcatactagcatcatcggaggtgtgcaatgccctgcgactttgacgcccaaaatttatgacttccatgaatgta |
38121771 |
T |
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| Q |
419 |
tagattggcacccctttg |
436 |
Q |
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| T |
38121772 |
tagattggcacccctttg |
38121789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 112 - 259
Target Start/End: Original strand, 38133556 - 38133703
Alignment:
| Q |
112 |
caaacctgatgcaaaagattctgatgggttagcataacacctttaggatttccagtagtaccacttgtgtacacaagagtagcaatgtcatccaatttta |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||| |
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| T |
38133556 |
caaacctgatgcaaaagattctgatgggttagcataacaccttttggatttccagtagtaccacttgtgtatacaagagtagcaatgtcatcagatttta |
38133655 |
T |
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| Q |
212 |
ttgtttcaaacatatagtgttctcctgcaatcacattgtagatgagtt |
259 |
Q |
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| T |
38133656 |
ttgcttcaaacacatagtgcttccctgtaatcacattgtagatgagtt |
38133703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 113 - 203
Target Start/End: Complemental strand, 35107815 - 35107725
Alignment:
| Q |
113 |
aaacctgatgcaaaagattctgatgggttagcataacacctttaggatttccagtagtaccacttgtgtacacaagagtagcaatgtcatc |
203 |
Q |
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|||||||||||| ||| ||| ||||||| |||||||||||||| ||||||||||| || ||||||||||| | |||||| ||||||||||| |
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| T |
35107815 |
aaacctgatgcagaaggttccgatgggtaagcataacaccttttggatttccagttgttccacttgtgtatataagagtggcaatgtcatc |
35107725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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