View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4289_low_4 (Length: 435)
Name: NF4289_low_4
Description: NF4289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4289_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 409; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 18 - 426
Target Start/End: Original strand, 32372864 - 32373272
Alignment:
| Q |
18 |
gacagatccattgaatctgaatataagtaatctcccacatatcatcatcttcttttggctccaaaattccttcatccttcatttgtgttataatcttttt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32372864 |
gacagatccattgaatctgaatataagtaatctcccacatatcatcatcttcttttggctccaaaattccttcatccttcatttgtgttataatcttttt |
32372963 |
T |
|
| Q |
118 |
caacaaatcaggaataatttcactcaaagatgatggaccataatgtcctaactcagctttcatgcatgtatccattcttctcaatactcctaaccaaaat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32372964 |
caacaaatcaggaataatttcactcaaagatgatggaccataatgtcctaactcagctttcatgcatgtatccattcttctcaatactcctaaccaaaat |
32373063 |
T |
|
| Q |
218 |
gctctaaatccaggactctcagtaatttgtctcaaagattgcaaatacatagctgacaataattccatagcaagtttcaatgtcccttccatacttctca |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32373064 |
gctctaaatccaggactctcagtaatttgtctcaaagattgcaaatacatagctgacaataattccatagcaagtttcaatgtcccttccatacttctca |
32373163 |
T |
|
| Q |
318 |
tttccctctcagcattatctcttcttgaatattccaacatcttctcatgtaactcatcaaccatagcaaatatcacaaggttgaaatagcttatacaatt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32373164 |
tttccctctcagcattatctcttcttgaatattccaacatcttctcatgtaactcatcaaccatagcaaatatcacaaggttgaaatagcttatacaatt |
32373263 |
T |
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| Q |
418 |
tgatgatgt |
426 |
Q |
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| T |
32373264 |
tgatgatgt |
32373272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 78 - 172
Target Start/End: Original strand, 32360748 - 32360844
Alignment:
| Q |
78 |
ccaaaattccttcatccttcatttgtgttataatctttttcaacaaatcaggaataatt--tcactcaaagatgatggaccataatgtcctaactca |
172 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
32360748 |
ccaaaattccttcatccttcatttgtgttataatctttttcaacaaatcaggaataatttctcactcaaagatgatggaccataatgtcctaactca |
32360844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 32360714 - 32360750
Alignment:
| Q |
18 |
gacagatccattgaatctgaatataagtaatctccca |
54 |
Q |
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| T |
32360714 |
gacagatccattgaatctgaatacaagtaatctccca |
32360750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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