View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4289_low_6 (Length: 297)
Name: NF4289_low_6
Description: NF4289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4289_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 76 - 287
Target Start/End: Original strand, 9821130 - 9821341
Alignment:
| Q |
76 |
atcatatggagcactgcttgacgtaaatacaaaagaaccttcaccattccagcttaatgcagctagcctgatttgttcaaaattcacatcaactcataag |
175 |
Q |
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| T |
9821130 |
atcatatggagcactgcttgacgtaaatacgaaagaaccttcaccattccagcttaatgcagctagcctgatttgttcaaaattcacatcaactcataag |
9821229 |
T |
|
| Q |
176 |
aagtcaactagtaaagtaaaatactaaaaaatgatgtcaacaatcaaaagcagaacattcaattaatactacatcctttctcacataaagttttgaagca |
275 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9821230 |
aagtcaactagtaaagtaaactactaaaaaatgatgtcaacaatcaaaagcagaacattcaattaatactacatcctttctcacataaagttttgaagca |
9821329 |
T |
|
| Q |
276 |
atttcgttcatc |
287 |
Q |
| |
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|||||||||||| |
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| T |
9821330 |
atttcgttcatc |
9821341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 9820459 - 9820513
Alignment:
| Q |
18 |
agtaatgacagtatgggttcaaaatgtatgtttcactaacaaatataaacttacc |
72 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9820459 |
agtaatgacagtatgggttcaaaatgtatgtttcactaacaaatataaacttacc |
9820513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 72; Significance: 9e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 76 - 194
Target Start/End: Complemental strand, 38693718 - 38693599
Alignment:
| Q |
76 |
atcatatggagcactgcttgacgtaaatacaaaagaaccttcaccattccagcttaatgcagctagcctgatttgttcaaaattcacatcaactcataag |
175 |
Q |
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|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |||| ||| || |||| ||||||||||||||||| |
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| T |
38693718 |
atcatatgaagcactgcttgacgtaaatgcaaaagaaccttcaccattccagcttaaagcagctaacctggttttttgaaaaatcacatcaactcataag |
38693619 |
T |
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| Q |
176 |
aa-gtcaactagtaaagtaa |
194 |
Q |
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|| | |||||||||||||| |
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| T |
38693618 |
aaggaaaactagtaaagtaa |
38693599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 76 - 178
Target Start/End: Original strand, 38875382 - 38875481
Alignment:
| Q |
76 |
atcatatggagcactgcttgacgtaaatacaaaagaaccttcaccattccagcttaatgcagctagcctgatttgttcaaaattcacatcaactcataag |
175 |
Q |
| |
|
||||||||||||||| ||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
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| T |
38875382 |
atcatatggagcactacttgaagtaaatatgaaagaacctccaccattccagcttaatgcagctagcctgatttgtcgaaaattca---caactcataag |
38875478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 197 - 287
Target Start/End: Original strand, 38875620 - 38875710
Alignment:
| Q |
197 |
tactaaaaaatgatgtcaacaatcaaaagcagaacattcaattaatactacatcctttctcacataaagttttgaagcaatttcgttcatc |
287 |
Q |
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||||||||| |||||||||||||||||| || ||||||||||||| ||||||||||| |||| |||||||| | ||| |||||||||| |
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| T |
38875620 |
tactaaaaatcgatgtcaacaatcaaaagtggagcattcaattaatattacatcctttcacacaacaagttttgtatcaaattcgttcatc |
38875710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 38874091 - 38874145
Alignment:
| Q |
18 |
agtaatgacagtatgggttcaaaatgtatgtttcactaacaaatataaacttacc |
72 |
Q |
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|||||||||||||| |||||| |||||||||||||||| ||||||||||||||| |
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|
| T |
38874091 |
agtaatgacagtataagttcaagatgtatgtttcactaagaaatataaacttacc |
38874145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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