View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4290-Insertion-1 (Length: 119)
Name: NF4290-Insertion-1
Description: NF4290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4290-Insertion-1 |
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Alignment Details
Target: chr5 (Bit Score: 99; Significance: 2e-49; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 99; E-Value: 2e-49
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 10393216 - 10393318
Alignment:
| Q |
1 |
aagggttacttgaaagaggaggaaaagaagaccaagctgaagaggttgtagaagaatagtgtatagcggagaaaacgtataaggaagaaacaacgatgcc |
100 |
Q |
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| T |
10393216 |
aagggttacttgaaagaggaggaaaagaagaccaagctgaagaggttgtagaagaatagtgtatagcggagaaaacgtataaggaagaaacaacgatgac |
10393315 |
T |
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| Q |
101 |
aac |
103 |
Q |
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||| |
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| T |
10393316 |
aac |
10393318 |
T |
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Target: chr2 (Bit Score: 65; Significance: 5e-29; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 5e-29
Query Start/End: Original strand, 3 - 88
Target Start/End: Original strand, 30844090 - 30844177
Alignment:
| Q |
3 |
gggttacttgaaagaggaggaaaagaagaccaagctgaagaggttgtagaagaatagtgtata--gcggagaaaacgtataaggaaga |
88 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||| |
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| T |
30844090 |
gggttacttgaaagaggaggaaaagaggaccaagctgaagaggttgtagaagaatagtgtataaggcagagaagacgtataaggaaga |
30844177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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