View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4290-Insertion-10 (Length: 105)

Name: NF4290-Insertion-10
Description: NF4290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4290-Insertion-10
NF4290-Insertion-10
[»] chr2 (2 HSPs)
chr2 (1-105)||(43554300-43554404)
chr2 (1-105)||(43550299-43550403)


Alignment Details
Target: chr2 (Bit Score: 101; Significance: 1e-50; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 101; E-Value: 1e-50
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 43554404 - 43554300
Alignment:
Q  1 ataataaggtgatggattggaaattctatatagtttatgtaagatatattctaaactgttgactttctatgcagatattgttagagagttgttgaacagg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43554404 ataataaggtgatggattggaaattctatatagtttatgtaagatatatcctaaactgttgactttctatgcagatattgttagagagttgttgaacagg 43554305  T
Q  101 tggcc 105  Q
    |||||    
T  43554304 tggcc 43554300  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 43550403 - 43550299
Alignment:
Q  1 ataataaggtgatggattggaaattctatatagtttatgtaagatatattctaaactgttgactttctatgcagatattgttagagagttgttgaacagg 100  Q
    |||||||||||||||| || ||||  ||||||| | ||||||| ||| | |||||| ||||| | ||||||||||| | ||||||||| ||||||||| |    
T  43550403 ataataaggtgatggactgaaaatcttatatagctgatgtaagttatctcctaaacggttgattgtctatgcagatgtcgttagagagctgttgaacaag 43550304  T
Q  101 tggcc 105  Q
    |||||    
T  43550303 tggcc 43550299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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