View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4290-Insertion-11 (Length: 87)
Name: NF4290-Insertion-11
Description: NF4290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4290-Insertion-11 |
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| [»] chr7 (1 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 58; Significance: 5e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 5e-25
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 36357535 - 36357607
Alignment:
| Q |
12 |
actaatgtactccagcagggtgcatatgttagcgctcttattgattaagacaccaccaaatagtggaatagagatt |
87 |
Q |
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| T |
36357535 |
actaatgtactccagcagggtgcatatgttagcgctcttattgattaaga---caccaaatagtgcaatagagatt |
36357607 |
T |
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Target: chr1 (Bit Score: 31; Significance: 0.000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 40049807 - 40049872
Alignment:
| Q |
19 |
tactccagcagggtgcatatgttagcgctcttattgattaagacaccaccaaatagtggaatagagatt |
87 |
Q |
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| T |
40049807 |
tactccaacaagatgcatatgtttgcgctcttattgatcaaga---caccaagtagtggaatagagatt |
40049872 |
T |
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Target: chr1; HSP #2
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 35650192 - 35650145
Alignment:
| Q |
19 |
tactccagcagggtgcatatgttagcgctcttattgattaagacacca |
66 |
Q |
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| T |
35650192 |
tactccaacaagatgcatatgtttgcgctcttattgatcaagacacca |
35650145 |
T |
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Target: chr3 (Bit Score: 28; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 41271412 - 41271365
Alignment:
| Q |
19 |
tactccagcagggtgcatatgttagcgctcttattgattaagacacca |
66 |
Q |
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| T |
41271412 |
tactccaacaagatgcatatgtttgcgctcttattgatcaagacacca |
41271365 |
T |
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