View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4290-Insertion-12 (Length: 233)
Name: NF4290-Insertion-12
Description: NF4290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4290-Insertion-12 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 5 - 233
Target Start/End: Complemental strand, 39538012 - 39537784
Alignment:
| Q |
5 |
agctatcccaatgagattctggtgctatgtttatgaactctttttcacttttattcaatgtagtagtcacaaagtttgattaaaatgtaaccaaatttta |
104 |
Q |
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| T |
39538012 |
agctatcccaatgagattctggtgctatgcttatgaactctttttcacttttattcaatgtagtagtcacaaagtttgattaaaatgtaaccaaatttta |
39537913 |
T |
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| Q |
105 |
accttcaaaacttgaagttagtggaaccaaatatgttttgcctatgcaaaaagcacctggttgttgcccttgtagccaccaattgcaaagggtctccatg |
204 |
Q |
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| T |
39537912 |
accttcaaaacttgaagttagtggaaccaaatatgttttgcctatgcaaaaagcacctggttgatgcccttgtagccaccaattgcaaagggtctccatg |
39537813 |
T |
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| Q |
205 |
gcaaggggtctgcaaccctaccaattcat |
233 |
Q |
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| T |
39537812 |
gcaaggggtctgcaaccctaccaattcat |
39537784 |
T |
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Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 65 - 139
Target Start/End: Complemental strand, 2627554 - 2627480
Alignment:
| Q |
65 |
tagtagtcacaaagtttgattaaaatgtaaccaaattttaaccttcaaaacttgaagttagtggaaccaaatatg |
139 |
Q |
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| T |
2627554 |
tagtagtcacaacatttcattaaaaattaaccaaattttaaccttcaaaatttgaagttagtagaaccaaatatg |
2627480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 192
Target Start/End: Original strand, 2557925 - 2558034
Alignment:
| Q |
83 |
attaaaatgtaaccaaattttaaccttcaaaacttgaagttagtggaaccaaatatgttttgcctatgcaaaaagcacctggttgttgcccttgtagcca |
182 |
Q |
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| T |
2557925 |
attaaaaactaaccaaattttaacattcaaaacttaaagttagtagaaccaattataatttgattaagcaaaaattacctgttagatgcccttgtaacca |
2558024 |
T |
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| Q |
183 |
ccaattgcaa |
192 |
Q |
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| T |
2558025 |
ccatttgcaa |
2558034 |
T |
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