View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4290-Insertion-16 (Length: 264)
Name: NF4290-Insertion-16
Description: NF4290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4290-Insertion-16 |
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Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 12260115 - 12260338
Alignment:
| Q |
1 |
cctttgtattctaaatcagtttctccaaaagagtactattatttgttgaaacttaagaagtcagctgaatgttttcagaataagggtgaaaaatttctgg |
100 |
Q |
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| T |
12260115 |
cctttgtattctaaatcagtttccctagaagagtgctattatttgtcgaaacttaagatgtcagctgaatgttttcagaataagggtgaaaaatttctgg |
12260214 |
T |
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| Q |
101 |
ccaaatgaacttgtaataatgaaaacaaatcattgacacgatgctttacttcagaactgttcatggctgttacttcagaattgatgaagcgtgacgaagg |
200 |
Q |
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| T |
12260215 |
ccaaatgaacttgtaataatgaaaacaaatcattgacatgatgcttgacttcagaactgttcatggctgttacttcagaagtgatgaagcgtgacgaagg |
12260314 |
T |
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| Q |
201 |
acaacgatgtgcacctttgtactt |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
12260315 |
acaacgatgtgcacctttgtactt |
12260338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 224 - 264
Target Start/End: Original strand, 12260370 - 12260410
Alignment:
| Q |
224 |
tcaatgactctcaaacttccttcagtttgttcaactctata |
264 |
Q |
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| T |
12260370 |
tcaatgactctcaaacttccttcagtttgttcaactctata |
12260410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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