View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4290-Insertion-22 (Length: 216)
Name: NF4290-Insertion-22
Description: NF4290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4290-Insertion-22 |
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| [»] chr7 (3 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] chr1 (2 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 148; Significance: 3e-78; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 24 - 216
Target Start/End: Original strand, 37693346 - 37693538
Alignment:
| Q |
24 |
ctcacaaaaccaatactatgatattaaaagcaacatgtaactatgaaattttgttttaaggtgagtttgttgctgatgtagtgatggtggtggtgggtga |
123 |
Q |
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| T |
37693346 |
ctcacaaaaccaatactatgatattaaaagcaacatgtaactatgagattttgttttaaggtgagtttgttgctgatggagtgatggtggtggtgggtga |
37693445 |
T |
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| Q |
124 |
gtcactgagttgggatggaggagagaagggtgtgggagatagtgtgnnnnnnntctaatggtgagagtctataataaaactatgctcttcatt |
216 |
Q |
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| T |
37693446 |
gtcactgagtttggatggaggagagaagggtgtgggatatagtgtgaaaaaaatctagtggtgagagtctataataaaactatggtcttcatt |
37693538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 83 - 147
Target Start/End: Original strand, 45762014 - 45762078
Alignment:
| Q |
83 |
ggtgagtttgttgctgatgtagtgatggtggtggtgggtgagtcactgagttgggatggaggaga |
147 |
Q |
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| T |
45762014 |
ggtgagtttgttgctgatggagtgatggtggtggtggatgagtcactcagttgggatggaggaga |
45762078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 142 - 214
Target Start/End: Complemental strand, 36661828 - 36661757
Alignment:
| Q |
142 |
aggagagaagggtgtgggagatagtgtgnnnnnnntctaatggtgagagtctataataaaactatgctcttca |
214 |
Q |
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| T |
36661828 |
aggagagaggggtgtggaagatagtgtgaaaaaa-tctaatggtgagagtctataataaaattatgctcttca |
36661757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 24 - 216
Target Start/End: Original strand, 44385016 - 44385208
Alignment:
| Q |
24 |
ctcacaaaaccaatactatgatattaaaagcaacatgtaactatgaaattttgttttaaggtgagtttgttgctgatgtagtgatggtggtggtgggtga |
123 |
Q |
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| T |
44385016 |
ctcacaaaaccaatactatgatattaaaagcaacatgtaactatgagattttgttttaaggtgagtttgttgctgatggagtgatggtggtggtgggtga |
44385115 |
T |
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| Q |
124 |
gtcactgagttgggatggaggagagaagggtgtgggagatagtgtgnnnnnnntctaatggtgagagtctataataaaactatgctcttcatt |
216 |
Q |
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| T |
44385116 |
gtcactgagtttggatggaggagagaagggtgtgggatatagtgtgaaaaaaatctagtggtgagagtctataataaaactatggtcttcatt |
44385208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 24 - 216
Target Start/End: Original strand, 4530695 - 4530887
Alignment:
| Q |
24 |
ctcacaaaaccaatactatgatattaaaagcaacatgtaactatgaaattttgttttaaggtgagtttgttgctgatgtagtgatggtggtggtgggtga |
123 |
Q |
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| T |
4530695 |
ctcacaaaaccaatactatgatattaaaagcaacatgtaactatgagattttgttttaaggtgagtttgttgctgatggagtgatggtggtggtgggtga |
4530794 |
T |
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| Q |
124 |
gtcactgagttgggatggaggagagaagggtgtgggagatagtgtgnnnnnnntctaatggtgagagtctataataaaactatgctcttcatt |
216 |
Q |
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| T |
4530795 |
gtcactgagttgggatggaggagagaagggtgtgggatatagtgtgaaaaaaatctagtggtgagagtctataataaaaatatggtcttcatt |
4530887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 129 - 216
Target Start/End: Original strand, 46358501 - 46358587
Alignment:
| Q |
129 |
tgagttgggatggaggagagaagggtgtgggagatagtgtgnnnnnnntctaatggtgagagtctataataaaactatgctcttcatt |
216 |
Q |
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| T |
46358501 |
tgagtggggatggaggagaaaagggtgtgggagatagtgtgaaaaaatt-tagtggtgagagactatgataaaactatgctcttcatt |
46358587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 9e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 124 - 216
Target Start/End: Original strand, 511329 - 511421
Alignment:
| Q |
124 |
gtcactgagttgggatggaggagagaagggtgtgggagatagtgtgnnnnnnntctaatggtgagagtctataataaaactatgctcttcatt |
216 |
Q |
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| T |
511329 |
gtcactgagttgggatggaggagagaagggtgtgggagatagtgtgaaaaaaatctagtggtgagagcctataataaaattatgctcttcatt |
511421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 124 - 212
Target Start/End: Original strand, 6198790 - 6198877
Alignment:
| Q |
124 |
gtcactgagttgggatggaggagagaagggtgtgggagatagtgtgnnnnnnntctaatggtgagagtctataataaaactatgctctt |
212 |
Q |
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| T |
6198790 |
gtcactgagttgggatggaggagagaagggtgtgggagatagtgt-aaaaaaatctagtggtgagagcctataataaaattatgctctt |
6198877 |
T |
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