View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4290-Insertion-27 (Length: 88)
Name: NF4290-Insertion-27
Description: NF4290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4290-Insertion-27 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 62; Significance: 2e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 2e-27
Query Start/End: Original strand, 3 - 88
Target Start/End: Original strand, 51465645 - 51465730
Alignment:
| Q |
3 |
agtcccagccctaccacttcttcttctttctttcaatccagcctacctccgtcgctgctagcgtcgaccttcctgccttgcatcac |
88 |
Q |
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| T |
51465645 |
agtcccagctctaccacttcttcttctttctttcaatccagcctacctccgtcgctgctggcgttggcctccttgccttgcatcac |
51465730 |
T |
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Target: chr6 (Bit Score: 44; Significance: 1e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 1e-16
Query Start/End: Original strand, 5 - 68
Target Start/End: Original strand, 22494767 - 22494830
Alignment:
| Q |
5 |
tcccagccctaccacttcttcttctttctttcaatccagcctacctccgtcgctgctagcgtcg |
68 |
Q |
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| T |
22494767 |
tcccagctctatcacttcttcttctttctttcaatgcagcctacctccgccgctgccagcgtcg |
22494830 |
T |
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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 51
Target Start/End: Complemental strand, 12798550 - 12798504
Alignment:
| Q |
5 |
tcccagccctaccacttcttcttctttctttcaatccagcctacctc |
51 |
Q |
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| T |
12798550 |
tcccagctctatcacttcttcttctttctttcaattcagcctacctc |
12798504 |
T |
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