View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4290-Insertion-30 (Length: 156)

Name: NF4290-Insertion-30
Description: NF4290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4290-Insertion-30
NF4290-Insertion-30
[»] chr7 (3 HSPs)
chr7 (1-156)||(44935924-44936080)
chr7 (9-75)||(4125596-4125662)
chr7 (7-68)||(10954515-10954576)
[»] chr8 (3 HSPs)
chr8 (12-75)||(5961206-5961269)
chr8 (25-75)||(23680632-23680682)
chr8 (7-50)||(10719504-10719547)
[»] chr1 (3 HSPs)
chr1 (14-75)||(52053699-52053760)
chr1 (1-38)||(18459465-18459502)
chr1 (3-50)||(13097094-13097141)
[»] chr4 (5 HSPs)
chr4 (7-75)||(8179731-8179799)
chr4 (7-68)||(8180308-8180369)
chr4 (9-77)||(48007139-48007207)
chr4 (7-75)||(55157756-55157823)
chr4 (3-50)||(24972136-24972183)
[»] chr5 (2 HSPs)
chr5 (22-74)||(12083504-12083556)
chr5 (7-38)||(38378914-38378945)
[»] chr2 (2 HSPs)
chr2 (9-69)||(32448038-32448098)
chr2 (7-50)||(3350739-3350782)
[»] chr6 (1 HSPs)
chr6 (3-50)||(15532589-15532636)


Alignment Details
Target: chr7 (Bit Score: 105; Significance: 9e-53; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 105; E-Value: 9e-53
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 44936080 - 44935924
Alignment:
Q  1 taaggtccaagacaatatcattatataaatacacattagagcataatgaagcactcatgagaatgaattctattagttacaattcattcatatgtat-nn 99  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||       
T  44936080 taaggtccaagacaatatcatcgtataaatacacattagagcataatgaaacactcatgagaatgaattctattagttacaattcattcatatgtataaa 44935981  T
Q  100 nnnnnnggaattattacatgcatgcaccactcctgagctgtttgacattgccaagca 156  Q
           | ||||||||||||||||||||||||||||||||||||||||||||||||    
T  44935980 aaaaaaaggattattacatgcatgcaccactcctgagctgtttgacattgccaagca 44935924  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 9e-16
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 4125596 - 4125662
Alignment:
Q  9 aagacaatatcattatataaatacacattagagcataatgaagcactcatgagaatgaattctatta 75  Q
    |||||||||||||| ||||||||||||||| || |||||||| |||||| || ||||||||||||||    
T  4125596 aagacaatatcattgtataaatacacattaaagtataatgaaacactcaagacaatgaattctatta 4125662  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.0000000000009
Query Start/End: Original strand, 7 - 68
Target Start/End: Original strand, 10954515 - 10954576
Alignment:
Q  7 ccaagacaatatcattatataaatacacattagagcataatgaagcactcatgagaatgaat 68  Q
    ||||||||| |||||| |||||||||| || ||||||||||||| |||||| ||||||||||    
T  10954515 ccaagacaacatcattgtataaatacatatcagagcataatgaaacactcacgagaatgaat 10954576  T

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Target: chr8 (Bit Score: 48; Significance: 9e-19; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 9e-19
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 5961269 - 5961206
Alignment:
Q  12 acaatatcattatataaatacacattagagcataatgaagcactcatgagaatgaattctatta 75  Q
    |||| |||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||    
T  5961269 acaacatcattatataaatacacattagaacataatgaaacactcacgagaatgaattctatta 5961206  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 25 - 75
Target Start/End: Original strand, 23680632 - 23680682
Alignment:
Q  25 ataaatacacattagagcataatgaagcactcatgagaatgaattctatta 75  Q
    |||||||||||||||||||||||||| ||||||  ||||||||||||||||    
T  23680632 ataaatacacattagagcataatgaaacactcacaagaatgaattctatta 23680682  T

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Target: chr8; HSP #3
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 7 - 50
Target Start/End: Complemental strand, 10719547 - 10719504
Alignment:
Q  7 ccaagacaatatcattatataaatacacattagagcataatgaa 50  Q
    ||||||||| |||||| ||||||||||||||| | |||||||||    
T  10719547 ccaagacaacatcattgtataaatacacattacaacataatgaa 10719504  T

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Target: chr1 (Bit Score: 46; Significance: 1e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 52053760 - 52053699
Alignment:
Q  14 aatatcattatataaatacacattagagcataatgaagcactcatgagaatgaattctatta 75  Q
    ||||||||| ||||||||||||| ||||||||||||| || |||||||||||||||||||||    
T  52053760 aatatcattgtataaatacacatcagagcataatgaaacattcatgagaatgaattctatta 52053699  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 18459502 - 18459465
Alignment:
Q  1 taaggtccaagacaatatcattatataaatacacatta 38  Q
    ||||| |||||||||||||||| |||||||||||||||    
T  18459502 taaggcccaagacaatatcattgtataaatacacatta 18459465  T

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Target: chr1; HSP #3
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 3 - 50
Target Start/End: Original strand, 13097094 - 13097141
Alignment:
Q  3 aggtccaagacaatatcattatataaatacacattagagcataatgaa 50  Q
    ||||| |||||||||||||| |||||||| |||||| | |||||||||    
T  13097094 aggtcgaagacaatatcattttataaatatacattacaacataatgaa 13097141  T

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Target: chr4 (Bit Score: 45; Significance: 6e-17; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 6e-17
Query Start/End: Original strand, 7 - 75
Target Start/End: Complemental strand, 8179799 - 8179731
Alignment:
Q  7 ccaagacaatatcattatataaatacacattagagcataatgaagcactcatgagaatgaattctatta 75  Q
    ||||||||| |||||| |||||||||||||||||||||||| || || ||| |||||||||||||||||    
T  8179799 ccaagacaacatcattgtataaatacacattagagcataataaaacaatcaagagaatgaattctatta 8179731  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 7 - 68
Target Start/End: Complemental strand, 8180369 - 8180308
Alignment:
Q  7 ccaagacaatatcattatataaatacacattagagcataatgaagcactcatgagaatgaat 68  Q
    ||||||||| |||||| ||||||||||||||||||||||||||| || ||| ||||||||||    
T  8180369 ccaagacaacatcattgtataaatacacattagagcataatgaaacaatcaagagaatgaat 8180308  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 77
Target Start/End: Complemental strand, 48007207 - 48007139
Alignment:
Q  9 aagacaatatcattatataaatacacattagagcataatgaagcactcatgagaatgaattctattagt 77  Q
    |||||||||||||| |||||||||||| |||||||||||||| ||||||    ||||||||||||||||    
T  48007207 aagacaatatcattgtataaatacacactagagcataatgaaacactcacagaaatgaattctattagt 48007139  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 7 - 75
Target Start/End: Original strand, 55157756 - 55157823
Alignment:
Q  7 ccaagacaatatcattatataaatacacattagagcataatgaagcactcatgagaatgaattctatta 75  Q
    ||||||| |||||||| |||||||||||| || ||||||||||| |||||| || ||||||||||||||    
T  55157756 ccaagacgatatcattgtataaatacacactatagcataatgaaacactcacga-aatgaattctatta 55157823  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 3 - 50
Target Start/End: Complemental strand, 24972183 - 24972136
Alignment:
Q  3 aggtccaagacaatatcattatataaatacacattagagcataatgaa 50  Q
    ||||||||| |||||||||| ||||||||||||||| | |||||||||    
T  24972183 aggtccaaggcaatatcattgtataaatacacattacaacataatgaa 24972136  T

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Target: chr5 (Bit Score: 33; Significance: 0.0000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 22 - 74
Target Start/End: Complemental strand, 12083556 - 12083504
Alignment:
Q  22 tatataaatacacattagagcataatgaagcactcatgagaatgaattctatt 74  Q
    ||||||||||||||||| | ||||||||| |||||  ||||||||||||||||    
T  12083556 tatataaatacacattacaacataatgaaacactcgcgagaatgaattctatt 12083504  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 7 - 38
Target Start/End: Original strand, 38378914 - 38378945
Alignment:
Q  7 ccaagacaatatcattatataaatacacatta 38  Q
    ||||||||||||||||||||||||||||||||    
T  38378914 ccaagacaatatcattatataaatacacatta 38378945  T

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Target: chr2 (Bit Score: 33; Significance: 0.0000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 32448038 - 32448098
Alignment:
Q  9 aagacaatatcattatataaatacacattagagcataatgaagcactcatgagaatgaatt 69  Q
    ||||||| |||||| ||| | ||||||||||||||||||||| || ||| |||||||||||    
T  32448038 aagacaacatcattgtattagtacacattagagcataatgaaacaatcaagagaatgaatt 32448098  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 7 - 50
Target Start/End: Complemental strand, 3350782 - 3350739
Alignment:
Q  7 ccaagacaatatcattatataaatacacattagagcataatgaa 50  Q
    |||| |||| |||||||||||||||||||||||| |||||||||    
T  3350782 ccaaaacaacatcattatataaatacacattagaccataatgaa 3350739  T

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Target: chr6 (Bit Score: 28; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 3 - 50
Target Start/End: Original strand, 15532589 - 15532636
Alignment:
Q  3 aggtccaagacaatatcattatataaatacacattagagcataatgaa 50  Q
    ||||||||||||| |||||| |||||||||| |||| | |||||||||    
T  15532589 aggtccaagacaacatcattgtataaatacatattacatcataatgaa 15532636  T

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