View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4290-Insertion-33 (Length: 245)
Name: NF4290-Insertion-33
Description: NF4290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4290-Insertion-33 |
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Alignment Details
Target: chr1 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 6 - 218
Target Start/End: Original strand, 52023343 - 52023552
Alignment:
| Q |
6 |
aaaatatgtttgtataagtgggagacat-atttccctctacaataatctagtttagttgagtttaatgttcacctcaaattctaaaatgaataagaagtt |
104 |
Q |
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||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
52023343 |
aaaatatgtttgtataagtggaagacattatttccctctacaat---ctagtttagttgagtttaatgttcaactcaaattctaaaatgaataagaagtt |
52023439 |
T |
|
| Q |
105 |
ttctaagattttcagctcaaccgctgttgagtttgagtcacgcaccaccctcacacattattcaactatattgtaggatgcaaccggaatacaagcattt |
204 |
Q |
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|||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52023440 |
ttctaagattttcaactcaaccgctgttgagtttgagtcgtg-accaccctcacacattattcaactatattgtaggatgcaaccggaatacaagcattt |
52023538 |
T |
|
| Q |
205 |
gttattaacctttc |
218 |
Q |
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|||||||| ||||| |
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| T |
52023539 |
gttattaatctttc |
52023552 |
T |
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