View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4290-Insertion-34 (Length: 134)
Name: NF4290-Insertion-34
Description: NF4290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4290-Insertion-34 |
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| [»] chr5 (8 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 121; Significance: 2e-62; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 121; E-Value: 2e-62
Query Start/End: Original strand, 14 - 134
Target Start/End: Complemental strand, 1033825 - 1033705
Alignment:
| Q |
14 |
tggagtctctagattctgaatgttccgcaaaaggtgataatctaattccaactctttctgctcctatctcattcacaacagcgtcaacaacttccaatgc |
113 |
Q |
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| T |
1033825 |
tggagtctctagattctgaatgttccgcaaaaggtgataatctaattccaactctttctgctcctatctcattcacaacagcgtcaacaacttccaatgc |
1033726 |
T |
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| Q |
114 |
aaatcgacaacgattctcaag |
134 |
Q |
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| T |
1033725 |
aaatcgacaacgattctcaag |
1033705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 6e-32
Query Start/End: Original strand, 14 - 131
Target Start/End: Complemental strand, 1065827 - 1065710
Alignment:
| Q |
14 |
tggagtctctagattctgaatgttccgcaaaaggtgataatctaattccaactctttctgctcctatctcattcacaacagcgtcaacaacttccaatgc |
113 |
Q |
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| T |
1065827 |
tggagtctccacattctgcatactccgcaaaaggtgataatcttattccaactctttctgctcctatctcatttgcaacagcttcaacaacttccaaagc |
1065728 |
T |
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| Q |
114 |
aaatcgacaacgattctc |
131 |
Q |
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| T |
1065727 |
aaatcgacagcggttctc |
1065710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 69; E-Value: 2e-31
Query Start/End: Original strand, 14 - 134
Target Start/End: Complemental strand, 1071554 - 1071434
Alignment:
| Q |
14 |
tggagtctctagattctgaatgttccgcaaaaggtgataatctaattccaactctttctgctcctatctcattcacaacagcgtcaacaacttccaatgc |
113 |
Q |
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| T |
1071554 |
tggagtctccacattctgaatactctgcaaaaggtgataatcttattccaactctttctgttcctatctcatttgcaacagcttcaacaacttccaaagc |
1071455 |
T |
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| Q |
114 |
aaatcgacaacgattctcaag |
134 |
Q |
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||| |||||||| |||||||| |
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| T |
1071454 |
aaaccgacaacggttctcaag |
1071434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 65; E-Value: 6e-29
Query Start/End: Original strand, 27 - 131
Target Start/End: Complemental strand, 1044199 - 1044095
Alignment:
| Q |
27 |
ttctgaatgttccgcaaaaggtgataatctaattccaactctttctgctcctatctcattcacaacagcgtcaacaacttccaatgcaaatcgacaacga |
126 |
Q |
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| T |
1044199 |
ttctgcatattctgcaaaaggtgatagtctaattccaactttatctgctcctatctcattcacaactgcttcaacaacttccaaaggaaatcgacaacga |
1044100 |
T |
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| Q |
127 |
ttctc |
131 |
Q |
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||||| |
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| T |
1044099 |
ttctc |
1044095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 57; E-Value: 3e-24
Query Start/End: Original strand, 14 - 134
Target Start/End: Original strand, 1640731 - 1640851
Alignment:
| Q |
14 |
tggagtctctagattctgaatgttccgcaaaaggtgataatctaattccaactctttctgctcctatctcattcacaacagcgtcaacaacttccaatgc |
113 |
Q |
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| T |
1640731 |
tggagtctccacattctccatattctgcgaaaggcgataatctaattccaactctttctgcacctatctcattcacaactgcttcaacaatttccaaagc |
1640830 |
T |
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| Q |
114 |
aaatcgacaacgattctcaag |
134 |
Q |
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| T |
1640831 |
gaatcgacaacggttttcaag |
1640851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 50; E-Value: 5e-20
Query Start/End: Original strand, 41 - 134
Target Start/End: Complemental strand, 1053443 - 1053350
Alignment:
| Q |
41 |
caaaaggtgataatctaattccaactctttctgctcctatctcattcacaacagcgtcaacaacttccaatgcaaatcgacaacgattctcaag |
134 |
Q |
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| T |
1053443 |
caaaaggtgataattttattccaactctttctgcacctatctcatttgcaacagcttcaacaatttccaaaacaaatctacaacgattttcaag |
1053350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 42 - 134
Target Start/End: Complemental strand, 1058707 - 1058615
Alignment:
| Q |
42 |
aaaaggtgataatctaattccaactctttctgctcctatctcattcacaacagcgtcaacaacttccaatgcaaatcgacaacgattctcaag |
134 |
Q |
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| T |
1058707 |
aaaaggtgataatctaattccagttctatctgcacctatctcatttgcaacagcttcaacaacttccaaaacaatccgacaacggttctcaag |
1058615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 42 - 110
Target Start/End: Complemental strand, 1046767 - 1046699
Alignment:
| Q |
42 |
aaaaggtgataatctaattccaactctttctgctcctatctcattcacaacagcgtcaacaacttccaa |
110 |
Q |
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| T |
1046767 |
aaaaggtgatagttttattccaactctttcggcaccaatctcatttacaacagcttcaacaatttccaa |
1046699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 8e-22; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 8e-22
Query Start/End: Original strand, 52 - 116
Target Start/End: Original strand, 44171260 - 44171324
Alignment:
| Q |
52 |
aatctaattccaactctttctgctcctatctcattcacaacagcgtcaacaacttccaatgcaaa |
116 |
Q |
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| T |
44171260 |
aatctaattccaactttttctgctcctatctcattcacaacagcttcaacaacttccaatccaaa |
44171324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 8e-22
Query Start/End: Original strand, 52 - 116
Target Start/End: Original strand, 44191556 - 44191620
Alignment:
| Q |
52 |
aatctaattccaactctttctgctcctatctcattcacaacagcgtcaacaacttccaatgcaaa |
116 |
Q |
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| T |
44191556 |
aatctaattccaactttttctgctcctatctcattcacaacagcttcaacaacttccaatccaaa |
44191620 |
T |
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