View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4290-Insertion-38 (Length: 105)

Name: NF4290-Insertion-38
Description: NF4290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4290-Insertion-38
NF4290-Insertion-38
[»] chr4 (18 HSPs)
chr4 (1-105)||(21321508-21321612)
chr4 (1-105)||(49951294-49951398)
chr4 (1-105)||(18442247-18442351)
chr4 (1-105)||(28537889-28537991)
chr4 (1-105)||(2064834-2064938)
chr4 (1-105)||(37245954-37246058)
chr4 (1-95)||(51735083-51735177)
chr4 (1-105)||(29655768-29655872)
chr4 (1-105)||(41835413-41835517)
chr4 (1-89)||(55734990-55735078)
chr4 (6-105)||(28426169-28426268)
chr4 (6-105)||(49119502-49119601)
chr4 (5-92)||(56065614-56065701)
chr4 (1-72)||(32577183-32577254)
chr4 (1-95)||(43840418-43840513)
chr4 (5-92)||(51259644-51259732)
chr4 (44-105)||(47226432-47226493)
chr4 (37-72)||(24990058-24990093)
[»] chr2 (8 HSPs)
chr2 (1-105)||(88540-88644)
chr2 (12-105)||(18345589-18345681)
chr2 (3-105)||(12130740-12130842)
chr2 (1-90)||(9709910-9709999)
chr2 (1-95)||(34696016-34696108)
chr2 (1-95)||(34718428-34718520)
chr2 (1-91)||(26198674-26198763)
chr2 (1-91)||(44017434-44017524)
[»] chr1 (12 HSPs)
chr1 (1-105)||(44527234-44527338)
chr1 (1-105)||(52109435-52109539)
chr1 (1-91)||(48166218-48166308)
chr1 (9-105)||(25682640-25682736)
chr1 (1-105)||(4395140-4395243)
chr1 (1-105)||(5609320-5609424)
chr1 (1-105)||(16816902-16817005)
chr1 (5-89)||(48949842-48949926)
chr1 (1-72)||(36733677-36733748)
chr1 (5-89)||(51113300-51113384)
chr1 (32-105)||(44602764-44602837)
chr1 (1-54)||(24538491-24538544)
[»] chr5 (14 HSPs)
chr5 (1-105)||(25730789-25730893)
chr5 (1-102)||(4268080-4268181)
chr5 (1-101)||(15988855-15988955)
chr5 (1-105)||(20204936-20205040)
chr5 (1-105)||(22767359-22767463)
chr5 (1-96)||(11375624-11375719)
chr5 (1-105)||(27292415-27292519)
chr5 (5-90)||(8388071-8388156)
chr5 (5-90)||(26597574-26597659)
chr5 (1-91)||(12660297-12660387)
chr5 (1-72)||(41940871-41940943)
chr5 (1-95)||(27533018-27533112)
chr5 (1-75)||(30222931-30223005)
chr5 (4-105)||(37448109-37448210)
[»] chr8 (8 HSPs)
chr8 (1-105)||(13415004-13415108)
chr8 (1-105)||(23853913-23854017)
chr8 (1-105)||(40588832-40588936)
chr8 (1-91)||(478172-478262)
chr8 (1-105)||(7127204-7127308)
chr8 (1-95)||(8451235-8451329)
chr8 (35-95)||(9496797-9496857)
chr8 (9-72)||(185726-185788)
[»] chr3 (8 HSPs)
chr3 (1-105)||(53497013-53497117)
chr3 (1-89)||(46007283-46007371)
chr3 (5-95)||(2615478-2615568)
chr3 (1-72)||(27941129-27941200)
chr3 (8-105)||(647313-647410)
chr3 (5-89)||(55199496-55199580)
chr3 (1-105)||(42340379-42340483)
chr3 (12-95)||(11020292-11020375)
[»] chr7 (12 HSPs)
chr7 (1-101)||(16098471-16098571)
chr7 (1-105)||(16731914-16732018)
chr7 (1-105)||(17710048-17710152)
chr7 (1-105)||(9328704-9328808)
chr7 (2-105)||(1581597-1581701)
chr7 (2-105)||(29201057-29201160)
chr7 (1-94)||(30493723-30493815)
chr7 (5-105)||(17877393-17877493)
chr7 (5-90)||(22289226-22289311)
chr7 (29-105)||(30824577-30824651)
chr7 (42-87)||(3601683-3601728)
chr7 (1-48)||(34578437-34578484)
[»] chr6 (8 HSPs)
chr6 (1-105)||(14680143-14680247)
chr6 (11-105)||(29368158-29368252)
chr6 (1-90)||(28107120-28107209)
chr6 (3-95)||(15606106-15606198)
chr6 (1-95)||(30802103-30802197)
chr6 (13-105)||(19690981-19691073)
chr6 (1-95)||(11731781-11731872)
chr6 (1-93)||(15053289-15053381)
[»] scaffold0446 (1 HSPs)
scaffold0446 (5-92)||(171-258)


Alignment Details
Target: chr4 (Bit Score: 85; Significance: 5e-41; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 5e-41
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 21321508 - 21321612
Alignment:
Q  1 atttattcgggctcaaatgaaatggcaacggacaaatatgacagttttggagggggagacagtagccttacttgaggcccttcactttgctgatgctaac 100  Q
    ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||||||||||    
T  21321508 atttattcgggctcaaacgaaatggcaacgggcaaatatgacagttttggagggggagacaatagccttactcgaggcccttcacttttctgatgctaac 21321607  T
Q  101 agatg 105  Q
    |||||    
T  21321608 agatg 21321612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 3e-36
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 49951294 - 49951398
Alignment:
Q  1 atttattcgggctcaaatgaaatggcaacggacaaatatgacagttttggagggggagacagtagccttacttgaggcccttcactttgctgatgctaac 100  Q
    ||||||||||||||||| ||||||||| ||| ||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||| |||    
T  49951294 atttattcgggctcaaacgaaatggcagcgggcaaatatgacagtattggagggggaggcagtagccttactcgaggcccttcactttgctgatgcgaac 49951393  T
Q  101 agatg 105  Q
    |||||    
T  49951394 agatg 49951398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 1e-26
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 18442351 - 18442247
Alignment:
Q  1 atttattcgggctcaaatgaaatggcaacggacaaatatgacagttttggagggggagacagtagccttacttgaggcccttcactttgctgatgctaac 100  Q
    ||||||||||||||||| ||||||| | |||  |||||||||||| |||||||||||| ||||||||||||| |||||||| |||||||||| ||| |||    
T  18442351 atttattcgggctcaaacgaaatggaagcgggaaaatatgacagtattggagggggaggcagtagccttactcgaggccctacactttgctgttgcgaac 18442252  T
Q  101 agatg 105  Q
    |||||    
T  18442251 agatg 18442247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 6e-25
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 28537991 - 28537889
Alignment:
Q  1 atttattcgggctcaaatgaaatggcaacggacaaatatgacagttttggagggggagacagtagccttacttgaggcccttcactttgctgatgctaac 100  Q
    ||||||||||||||||| ||||||||| |||  |||||||| |||||  ||||||||| ||||||||||||| |||||||||||||||| |||||| |||    
T  28537991 atttattcgggctcaaacgaaatggcagcgggaaaatatgatagttt--gagggggaggcagtagccttactcgaggcccttcactttgttgatgcgaac 28537894  T
Q  101 agatg 105  Q
    |||||    
T  28537893 agatg 28537889  T

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Target: chr4; HSP #5
Raw Score: 57; E-Value: 2e-24
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 2064834 - 2064938
Alignment:
Q  1 atttattcgggctcaaatgaaatggcaacggacaaatatgacagttttggagggggagacagtagccttacttgaggcccttcactttgctgatgctaac 100  Q
    |||||||||||||||||  ||||| || ||| ||||||||||||| ||| |||||||| ||||||||||||| || |||||||||||||||||||  |||    
T  2064834 atttattcgggctcaaacaaaatgacagcgggcaaatatgacagtattgaagggggaggcagtagccttactcgacgcccttcactttgctgatgagaac 2064933  T
Q  101 agatg 105  Q
    |||||    
T  2064934 agatg 2064938  T

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Target: chr4; HSP #6
Raw Score: 57; E-Value: 2e-24
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 37246058 - 37245954
Alignment:
Q  1 atttattcgggctcaaatgaaatggcaacggacaaatatgacagttttggagggggagacagtagccttacttgaggcccttcactttgctgatgctaac 100  Q
    |||||||||||| |||| ||||||| ||||| |||||||||||||||||||||||||| ||||||||||||| || ||  ||||||||||| |||  |||    
T  37246058 atttattcgggcacaaacgaaatggaaacgggcaaatatgacagttttggagggggaggcagtagccttactcgatgctattcactttgcttatgtgaac 37245959  T
Q  101 agatg 105  Q
    |||||    
T  37245958 agatg 37245954  T

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Target: chr4; HSP #7
Raw Score: 55; E-Value: 4e-23
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 51735177 - 51735083
Alignment:
Q  1 atttattcgggctcaaatgaaatggcaacggacaaatatgacagttttggagggggagacagtagccttacttgaggcccttcactttgctgatg 95  Q
    ||||||||||||| ||| |||||| || ||  |||||||||||||||||||||||||| ||||||||||||| || ||| |||||||||||||||    
T  51735177 atttattcgggcttaaacgaaatgacagcgtgcaaatatgacagttttggagggggaggcagtagccttactcgatgccattcactttgctgatg 51735083  T

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Target: chr4; HSP #8
Raw Score: 53; E-Value: 6e-22
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 29655872 - 29655768
Alignment:
Q  1 atttattcgggctcaaatgaaatggcaacggacaaatatgacagttttggagggggagacagtagccttacttgaggcccttcactttgctgatgctaac 100  Q
    |||||||||||||||||  |||||||| ||| |||||||||| ||||||||||| ||| ||||||||||||| || | | |||||||||||||||  |||    
T  29655872 atttattcgggctcaaacaaaatggcagcgggcaaatatgactgttttggagggagaggcagtagccttactcgatgtcattcactttgctgatgtgaac 29655773  T
Q  101 agatg 105  Q
    |||||    
T  29655772 agatg 29655768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 6e-22
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 41835517 - 41835413
Alignment:
Q  1 atttattcgggctcaaatgaaatggcaacggacaaatatgacagttttggagggggagacagtagccttacttgaggcccttcactttgctgatgctaac 100  Q
    |||||||||||||||||  ||||| || | | |||||||||||||||||||||||||  ||||||||||||| ||| ||||||| ||||| ||||| |||    
T  41835517 atttattcgggctcaaacaaaatgacagctggcaaatatgacagttttggagggggatgcagtagccttactcgagacccttcattttgcggatgcaaac 41835418  T
Q  101 agatg 105  Q
    |||||    
T  41835417 agatg 41835413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 53; E-Value: 6e-22
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 55734990 - 55735078
Alignment:
Q  1 atttattcgggctcaaatgaaatggcaacggacaaatatgacagttttggagggggagacagtagccttacttgaggcccttcactttg 89  Q
    |||| |||||||||||| ||||||| | ||  ||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||    
T  55734990 atttgttcgggctcaaacgaaatggaagcgagcaaatatgacagtattggagggggaggcagtagccttactcgaggcccttcactttg 55735078  T

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Target: chr4; HSP #11
Raw Score: 52; E-Value: 2e-21
Query Start/End: Original strand, 6 - 105
Target Start/End: Original strand, 28426169 - 28426268
Alignment:
Q  6 ttcgggctcaaatgaaatggcaacggacaaatatgacagttttggagggggagacagtagccttacttgaggcccttcactttgctgatgctaacagatg 105  Q
    |||||||||||| ||||||||||| | |||||||||| ||||||||||||||| ||||||||||||| |  ||  |||||||||||||||  ||||||||    
T  28426169 ttcgggctcaaacgaaatggcaacaggcaaatatgactgttttggagggggaggcagtagccttactcgctgctattcactttgctgatgtaaacagatg 28426268  T

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Target: chr4; HSP #12
Raw Score: 52; E-Value: 2e-21
Query Start/End: Original strand, 6 - 105
Target Start/End: Complemental strand, 49119601 - 49119502
Alignment:
Q  6 ttcgggctcaaatgaaatggcaacggacaaatatgacagttttggagggggagacagtagccttacttgaggcccttcactttgctgatgctaacagatg 105  Q
    |||||||||||| ||||||||||| | |||||||||| ||||||||||||||| ||||||||||||| |  ||  |||||||||||||||  ||||||||    
T  49119601 ttcgggctcaaacgaaatggcaacaggcaaatatgactgttttggagggggaggcagtagccttactcgctgctattcactttgctgatgtaaacagatg 49119502  T

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Target: chr4; HSP #13
Raw Score: 52; E-Value: 2e-21
Query Start/End: Original strand, 5 - 92
Target Start/End: Original strand, 56065614 - 56065701
Alignment:
Q  5 attcgggctcaaatgaaatggcaacggacaaatatgacagttttggagggggagacagtagccttacttgaggcccttcactttgctg 92  Q
    ||||||||||||| |||||| |||||  |||||||||||||||||||||||||| |||| |||||||| || ||| ||||||||||||    
T  56065614 attcgggctcaaacgaaatgacaacgagcaaatatgacagttttggagggggaggcagttgccttactcgatgccattcactttgctg 56065701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 48; E-Value: 6e-19
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 32577254 - 32577183
Alignment:
Q  1 atttattcgggctcaaatgaaatggcaacggacaaatatgacagttttggagggggagacagtagccttact 72  Q
    ||||||||||||||||| ||||||||||||| |||||||||| |||||||||||||||  | ||||||||||    
T  32577254 atttattcgggctcaaacgaaatggcaacgggcaaatatgactgttttggagggggaggtactagccttact 32577183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 48; E-Value: 6e-19
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 43840513 - 43840418
Alignment:
Q  1 atttattcgggctcaaatgaaatggcaacggacaaatatgacagttttggagggggagacagtagcc-ttacttgaggcccttcactttgctgatg 95  Q
    ||||||||||| ||||| ||||||||| ||||||||||||||||| |||||||||||||||  | || ||||| || ||| |||||||||||||||    
T  43840513 atttattcggggtcaaacgaaatggcagcggacaaatatgacagtgttggagggggagacaacaacctttactcgatgccattcactttgctgatg 43840418  T

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Target: chr4; HSP #16
Raw Score: 45; E-Value: 4e-17
Query Start/End: Original strand, 5 - 92
Target Start/End: Complemental strand, 51259732 - 51259644
Alignment:
Q  5 attcgggctcaaatgaaatggcaacggacaaatatgacagttttggag-ggggagacagtagccttacttgaggcccttcactttgctg 92  Q
    ||||||||||||| ||||||||||||  |||||||||||||||||||| |||||| |||| |||||||| || | | ||||||||||||    
T  51259732 attcgggctcaaacgaaatggcaacgagcaaatatgacagttttggaggggggaggcagttgccttactcgatgtcattcactttgctg 51259644  T

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Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 105
Target Start/End: Complemental strand, 47226493 - 47226432
Alignment:
Q  44 gttttggagggggagacagtagccttacttgaggcccttcactttgctgatgctaacagatg 105  Q
    |||||||||||||||  | ||| |||||| |||||  |||||||||||||||| ||||||||    
T  47226493 gttttggagggggaggtaatagtcttactcgaggcttttcactttgctgatgcgaacagatg 47226432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 72
Target Start/End: Complemental strand, 24990093 - 24990058
Alignment:
Q  37 tatgacagttttggagggggagacagtagccttact 72  Q
    ||||||||||||||| | ||||||||||||||||||    
T  24990093 tatgacagttttggaagtggagacagtagccttact 24990058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 85; Significance: 5e-41; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 5e-41
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 88540 - 88644
Alignment:
Q  1 atttattcgggctcaaatgaaatggcaacggacaaatatgacagttttggagggggagacagtagccttacttgaggcccttcactttgctgatgctaac 100  Q
    |||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||    
T  88540 atttattcgggctcaaatgaaatggcaatgggcaaatatgacagttttggagggggaggcagtagccttactcgaggcccttcactttgttgatgctaac 88639  T
Q  101 agatg 105  Q
    |||||    
T  88640 agatg 88644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 4e-32
Query Start/End: Original strand, 12 - 105
Target Start/End: Complemental strand, 18345681 - 18345589
Alignment:
Q  12 ctcaaatgaaatggcaacggacaaatatgacagttttggagggggagacagtagccttacttgaggcccttcactttgctgatgctaacagatg 105  Q
    |||||| ||||||| ||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  18345681 ctcaaacgaaatggtaacggacaaatatgacagttttg-agggggaggcagtagccttactcgaggcccttcactttgctgatgctaacagatg 18345589  T

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Target: chr2; HSP #3
Raw Score: 59; E-Value: 2e-25
Query Start/End: Original strand, 3 - 105
Target Start/End: Complemental strand, 12130842 - 12130740
Alignment:
Q  3 ttattcgggctcaaatgaaatggcaacggacaaatatgacagttttggagggggagacagtagccttacttgaggcccttcactttgctgatgctaacag 102  Q
    ||||||||||||||| |||||| || ||  ||||||||| ||| |||||||||||| ||||||||||||||||||| ||||||||||||||||| || ||    
T  12130842 ttattcgggctcaaacgaaatgacagcgagcaaatatgatagtgttggagggggaggcagtagccttacttgaggctcttcactttgctgatgcaaatag 12130743  T
Q  103 atg 105  Q
    |||    
T  12130742 atg 12130740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 6e-25
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 9709910 - 9709999
Alignment:
Q  1 atttattcgggctcaaatgaaatggcaacggacaaatatgacagttttggagggggagacagtagccttacttgaggcccttcactttgc 90  Q
    |||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||| |||| |||||||| || ||| ||||||||||    
T  9709910 atttattcaggctcaaacgaaatggcaacgaacaaatatgacagttttggagggggaggcagttgccttactcgatgccattcactttgc 9709999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 2e-21
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 34696108 - 34696016
Alignment:
Q  1 atttattcgggctcaaatgaaatggcaacggacaaatatgacagttttggagggggagacagtagccttacttgaggcccttcactttgctgatg 95  Q
    ||||||||||||||||  ||  ||||| ||| |||||||||||||||||||||||||| |||||||||||||  ||||| |||||||||||||||    
T  34696108 atttattcgggctcaatcga--tggcagcgggcaaatatgacagttttggagggggaggcagtagccttactcaaggccattcactttgctgatg 34696016  T

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Target: chr2; HSP #6
Raw Score: 52; E-Value: 2e-21
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 34718520 - 34718428
Alignment:
Q  1 atttattcgggctcaaatgaaatggcaacggacaaatatgacagttttggagggggagacagtagccttacttgaggcccttcactttgctgatg 95  Q
    ||||||||||||||||  ||  ||||| ||| |||||||||||||||||||||||||| |||||||||||||  ||||| |||||||||||||||    
T  34718520 atttattcgggctcaatcga--tggcagcgggcaaatatgacagttttggagggggaggcagtagccttactcaaggccattcactttgctgatg 34718428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 6e-16
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 26198674 - 26198763
Alignment:
Q  1 atttattcgggctcaaatgaaatggcaacggacaaatatgacagttttggagggggagacagtagccttacttgaggcccttcactttgct 91  Q
    ||||||||| |||||||| |||||| | || ||||||||||||||||||||||||||  |||||||||| ||||| ||| || ||||||||    
T  26198674 atttattcgagctcaaataaaatggtagcgaacaaatatgacagttttggagggggatgcagtagcctt-cttgatgccatttactttgct 26198763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 6e-16
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 44017524 - 44017434
Alignment:
Q  1 atttattcgggctcaaatgaaatggcaacggacaaatatgacagttttggagggggagacagtagccttacttgaggcccttcactttgct 91  Q
    |||||||||||||||||| ||||| || ||  |||||||||||||||||||||||||||||  | ||||||| || ||| ||||| |||||    
T  44017524 atttattcgggctcaaataaaatgacaccgtgcaaatatgacagttttggagggggagacaacaaccttactcgatgccattcacgttgct 44017434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 85; Significance: 5e-41; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 5e-41
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 44527234 - 44527338
Alignment:
Q  1 atttattcgggctcaaatgaaatggcaacggacaaatatgacagttttggagggggagacagtagccttacttgaggcccttcactttgctgatgctaac 100  Q
    |||||||||||||||||  |||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  44527234 atttattcgggctcaaacaaaatggcagcggacaaatatgacagttttggagggggaggcagtagccttactagaggcccttcactttgctgatgctaac 44527333  T
Q  101 agatg 105  Q
    |||||    
T  44527334 agatg 44527338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 1e-26
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 52109435 - 52109539
Alignment:
Q  1 atttattcgggctcaaatgaaatggcaacggacaaatatgacagttttggagggggagacagtagccttacttgaggcccttcactttgctgatgctaac 100  Q
    |||||||| |||||||| ||||||||| ||| |||||||||   |||||||||||||  ||||||||||||| |||| ||||||||||||||||||||||    
T  52109435 atttattcaggctcaaacgaaatggcagcgggcaaatatgatcattttggagggggatgcagtagccttactcgaggtccttcactttgctgatgctaac 52109534  T
Q  101 agatg 105  Q
    |||||    
T  52109535 agatg 52109539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 4e-23
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 48166218 - 48166308
Alignment:
Q  1 atttattcgggctcaaatgaaatggcaacggacaaatatgacagttttggagggggagacagtagccttacttgaggcccttcactttgct 91  Q
    ||||||||||||||||||||||||||| ||  |||||||||||||||||||| |||||||| |||||||||| || | | |||||||||||    
T  48166218 atttattcgggctcaaatgaaatggcagcgagcaaatatgacagttttggagtgggagacaatagccttactcgatgtcattcactttgct 48166308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 6e-22
Query Start/End: Original strand, 9 - 105
Target Start/End: Original strand, 25682640 - 25682736
Alignment:
Q  9 gggctcaaatgaaatggcaacggacaaatatgacagttttggagggggagacagtagccttacttgaggcccttcactttgctgatgctaacagatg 105  Q
    ||||||||| ||||||||||||| ||||||||||||| |||||||||||| ||||||||||||| || | | ||||||||||| |||  ||||||||    
T  25682640 gggctcaaacgaaatggcaacgggcaaatatgacagtgttggagggggaggcagtagccttactcgatgtcattcactttgctaatgtgaacagatg 25682736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 1e-19
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 4395140 - 4395243
Alignment:
Q  1 atttattcgggctcaaatgaaatggcaacggacaaatatgacagttttggagggggagacagtagccttacttgaggcccttcactttgctgatgctaac 100  Q
    |||||| |||||||||  ||||||||| ||| ||||||||| ||||||| ||||| || || |||||||||| ||||||||||||||||||||||| ||     
T  4395140 atttatccgggctcaatcgaaatggcagcgggcaaatatgagagttttgaagggg-aggcactagccttactcgaggcccttcactttgctgatgcgaat 4395238  T
Q  101 agatg 105  Q
    |||||    
T  4395239 agatg 4395243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 1e-19
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 5609320 - 5609424
Alignment:
Q  1 atttattcgggctcaaatgaaatggcaacggacaaatatgacagttttggagggggagacagtagccttacttgaggcccttcactttgctgatgctaac 100  Q
    |||||||||||||||||    ||| || ||||||||||||| ||||||| |||||||| ||||||||||||| |||| ||||||||||| || ||| |||    
T  5609320 atttattcgggctcaaactctatgacagcggacaaatatgatagttttgaagggggaggcagtagccttactcgaggtccttcactttgatgttgcgaac 5609419  T
Q  101 agatg 105  Q
    |||||    
T  5609420 agatg 5609424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 1e-19
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 16817005 - 16816902
Alignment:
Q  1 atttattcgggctcaaatgaaatggcaacggacaaatatgacagttttggagggggagacagtagccttacttgaggcccttcactttgctgatgctaac 100  Q
    ||||||||| ||||||   ||||||||  || ||||||||||| ||||||||||| || ||||||||||||| ||||||||||| ||||||||||| |||    
T  16817005 atttattcgagctcaatcaaaatggcagtgggcaaatatgacaattttggagggg-aggcagtagccttactcgaggcccttcattttgctgatgcaaac 16816907  T
Q  101 agatg 105  Q
    |||||    
T  16816906 agatg 16816902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 4e-17
Query Start/End: Original strand, 5 - 89
Target Start/End: Complemental strand, 48949926 - 48949842
Alignment:
Q  5 attcgggctcaaatgaaatggcaacggacaaatatgacagttttggagggggagacagtagccttacttgaggcccttcactttg 89  Q
    ||||||||||||| ||||||||||||  ||||||||| |||||||||||||||| |||| |||||||| || ||  |||||||||    
T  48949926 attcgggctcaaacgaaatggcaacgagcaaatatgaaagttttggagggggaggcagttgccttactcgatgcgattcactttg 48949842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 36733677 - 36733748
Alignment:
Q  1 atttattcgggctcaaatgaaatggcaacggacaaatatgacagttttggagggggagacagtagccttact 72  Q
    |||||||||||||||||  ||||| ||||||  ||||||| ||||||||||||||||| |||||| ||||||    
T  36733677 atttattcgggctcaaacaaaatgacaacgggtaaatatggcagttttggagggggaggcagtagtcttact 36733748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 89
Target Start/End: Original strand, 51113300 - 51113384
Alignment:
Q  5 attcgggctcaaatgaaatggcaacggacaaatatgacagttttggagggggagacagtagccttacttgaggcccttcactttg 89  Q
    |||||| |||||| ||||||||||||  ||||||| || ||||||||||||||| |||| |||||||| || | | |||||||||    
T  51113300 attcggactcaaacgaaatggcaacgagcaaatataaccgttttggagggggaggcagttgccttactcgatgtcattcactttg 51113384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 44602764 - 44602837
Alignment:
Q  32 acaaatatgacagttttggagggggagacagtagccttacttgaggcccttcactttgctgatgctaacagatg 105  Q
    |||||||||||| ||||||||||||||||| ||| |||||| || | | |||||||| ||||||  ||||||||    
T  44602764 acaaatatgacaattttggagggggagacattagtcttactcgatgtcattcactttactgatgtgaacagatg 44602837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 24538491 - 24538544
Alignment:
Q  1 atttattcgggctcaaatgaaatggcaacggacaaatatgacagttttggaggg 54  Q
    ||||||||||||||||| ||| ||||| | | |||||| |||||||||||||||    
T  24538491 atttattcgggctcaaacgaattggcagcaggcaaatacgacagttttggaggg 24538544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 77; Significance: 3e-36; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 3e-36
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 25730789 - 25730893
Alignment:
Q  1 atttattcgggctcaaatgaaatggcaacggacaaatatgacagttttggagggggagacagtagccttacttgaggcccttcactttgctgatgctaac 100  Q
    ||||||||| ||||||| ||||||||| ||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |||    
T  25730789 atttattcgagctcaaacgaaatggcagcgggcaaatatgacagttttggagggggaggcagtagccttactcgaggcccttcactttgctgatgcgaac 25730888  T
Q  101 agatg 105  Q
    |||||    
T  25730889 agatg 25730893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 74; E-Value: 2e-34
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 4268080 - 4268181
Alignment:
Q  1 atttattcgggctcaaatgaaatggcaacggacaaatatgacagttttggagggggagacagtagccttacttgaggcccttcactttgctgatgctaac 100  Q
    |||||||| ||||||||  |||||||| ||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  4268080 atttattcaggctcaaacaaaatggcagcgggcaaatatgacagttttggagggggaggcagtagccttactagaggcccttcactttgctgatgctaac 4268179  T
Q  101 ag 102  Q
    ||    
T  4268180 ag 4268181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 7e-34
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 15988955 - 15988855
Alignment:
Q  1 atttattcgggctcaaatgaaatggcaacggacaaatatgacagttttggagggggagacagtagccttacttgaggcccttcactttgctgatgctaac 100  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| ||||| ||||||| ||||||||| ||||||||||||| |||    
T  15988955 atttattcgggctcaaacgaaatggcagcggacaaatatgacagttttggagggggaggcagtaaccttactcgaggccctttactttgctgatgcgaac 15988856  T
Q  101 a 101  Q
    |    
T  15988855 a 15988855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 1e-26
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 20204936 - 20205040
Alignment:
Q  1 atttattcgggctcaaatgaaatggcaacggacaaatatgacagttttggagggggagacagtagccttacttgaggcccttcactttgctgatgctaac 100  Q
    |||||| | |||||||| ||||||||||||| ||||||||||||| |||||||||||| ||||||||||||| |||||| ||||||||| || ||| |||    
T  20204936 atttatccaggctcaaacgaaatggcaacgggcaaatatgacagtattggagggggaggcagtagccttactcgaggccattcactttgttgttgcgaac 20205035  T
Q  101 agatg 105  Q
    |||||    
T  20205036 agatg 20205040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 1e-26
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 22767463 - 22767359
Alignment:
Q  1 atttattcgggctcaaatgaaatggcaacggacaaatatgacagttttggagggggagacagtagccttacttgaggcccttcactttgctgatgctaac 100  Q
    ||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||| ||||||||||||| |  ||  |||||||||||||||  |||    
T  22767463 atttattcgggctcaaacgaaatggcaacgggcaaatatgactgttttggagggggaggcagtagccttactcgctgctattcactttgctgatgtaaac 22767364  T
Q  101 agatg 105  Q
    |||||    
T  22767363 agatg 22767359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 4e-26
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 11375719 - 11375624
Alignment:
Q  1 atttattcgggctcaaatgaaatggcaacggacaaatatgacagttttggagggggagacagtagccttacttgaggcccttcactttgctgatgc 96  Q
    |||||||||| |||||| ||||||||| ||   ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||    
T  11375719 atttattcggactcaaacgaaatggcagcgagtaaatatgacagttttggagggggagacagtagccttactcgaggcccttcattttgcggatgc 11375624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 57; E-Value: 2e-24
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 27292415 - 27292519
Alignment:
Q  1 atttattcgggctcaaatgaaatggcaacggacaaatatgacagttttggagggggagacagtagccttacttgaggcccttcactttgctgatgctaac 100  Q
    |||||||||||||||||  |||||||| ||||||||||| |  |||||| |||||||| || |||||||||| || ||||||||||||||||||| ||||    
T  27292415 atttattcgggctcaaacaaaatggcagcggacaaatattattgttttgaagggggaggcaatagccttactagatgcccttcactttgctgatgataac 27292514  T
Q  101 agatg 105  Q
    |||||    
T  27292515 agatg 27292519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 5 - 90
Target Start/End: Original strand, 8388071 - 8388156
Alignment:
Q  5 attcgggctcaaatgaaatggcaacggacaaatatgacagttttggagggggagacagtagccttacttgaggcccttcactttgc 90  Q
    |||| |||||||| |||||||||||| ||||||||||||||||||||||||||| |||| |||||||| || ||| ||||||||||    
T  8388071 attcaggctcaaacgaaatggcaacgaacaaatatgacagttttggagggggaggcagttgccttactcgatgccattcactttgc 8388156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 4e-20
Query Start/End: Original strand, 5 - 90
Target Start/End: Complemental strand, 26597659 - 26597574
Alignment:
Q  5 attcgggctcaaatgaaatggcaacggacaaatatgacagttttggagggggagacagtagccttacttgaggcccttcactttgc 90  Q
    ||||||||||||| ||||||||||||  ||||||||||| |||||||||||||| |||| |||||||| || ||| ||||||||||    
T  26597659 attcgggctcaaacgaaatggcaacgagcaaatatgacaattttggagggggaggcagttgccttactcgatgccattcactttgc 26597574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 6e-16
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 12660297 - 12660387
Alignment:
Q  1 atttattcgggctcaaatgaaatggcaacggacaaatatgacagttttggagggggagacagtagccttacttgaggcccttcactttgct 91  Q
    ||||||||||||||||| ||||||||| ||| ||||||||||||| || ||| ||||| |||||| |||||| || | | |||||||||||    
T  12660297 atttattcgggctcaaacgaaatggcagcgggcaaatatgacagtgttagagcgggaggcagtagtcttactcgatgtcattcactttgct 12660387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 41940943 - 41940871
Alignment:
Q  1 atttattcgggctcaaatgaaatggca-acggacaaatatgacagttttggagggggagacagtagccttact 72  Q
    ||||||||| ||||||| |||||| || |  || |||||||||||||||||||||||||||| ||||||||||    
T  41940943 atttattcgagctcaaacgaaatgacatatagaaaaatatgacagttttggagggggagacaatagccttact 41940871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 27533112 - 27533018
Alignment:
Q  1 atttattcgggctcaaatgaaatggcaacggacaaatatgacagttttggagggggagacagtagccttacttgaggcccttcactttgctgatg 95  Q
    ||||||||||||||||| ||||||| | | |  |||||| |||||||||||||||||| || |||| ||| | || | | |||||||||||||||    
T  27533112 atttattcgggctcaaacgaaatggtagcaggaaaatataacagttttggagggggaggcaatagctttattcgatgtcattcactttgctgatg 27533018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 30223005 - 30222931
Alignment:
Q  1 atttattcgggctcaaatgaaatggcaacggacaaatatgacagttttggagggggagacagtagccttacttga 75  Q
    ||||||||||||||||| ||| | ||| |   | ||| |||||||||||||| ||||||||||||| ||||||||    
T  30223005 atttattcgggctcaaacgaatttgcagcaagcgaatttgacagttttggagagggagacagtagctttacttga 30222931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 105
Target Start/End: Original strand, 37448109 - 37448210
Alignment:
Q  4 tattcgggctcaaatgaaatggcaacggacaaatatgacagttttggagggggagacagtagccttacttgaggcccttcactttgctgatgctaacaga 103  Q
    ||||||| ||||||  |||||||| ||  |||| |||||||| ||| | |||||| | ||||||||||| || | | |||||||||||||||  ||||||    
T  37448109 tattcggactcaaacaaaatggcagcgtgcaaacatgacagtgttgaaaggggaggcggtagccttactcgatgtcattcactttgctgatgtgaacaga 37448208  T
Q  104 tg 105  Q
    ||    
T  37448209 tg 37448210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 7e-34; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 7e-34
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 13415004 - 13415108
Alignment:
Q  1 atttattcgggctcaaatgaaatggcaacggacaaatatgacagttttggagggggagacagtagccttacttgaggcccttcactttgctgatgctaac 100  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||  ||||| ||||| |||    
T  13415004 atttattcgggctcaaacgaaatggcagcggacaaatatgacagttttggagggggaggcagtagccttactcgaggcccttccttttgcggatgcaaac 13415103  T
Q  101 agatg 105  Q
    |||||    
T  13415104 agatg 13415108  T

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Target: chr8; HSP #2
Raw Score: 69; E-Value: 2e-31
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 23853913 - 23854017
Alignment:
Q  1 atttattcgggctcaaatgaaatggcaacggacaaatatgacagttttggagggggagacagtagccttacttgaggcccttcactttgctgatgctaac 100  Q
    ||||||||||| ||||| |||||| || |||| ||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||| ||||||||||    
T  23853913 atttattcgggttcaaacgaaatgacagcggaaaaatatgacagttttggagggtgaggcagtagccttacttgaggccattcactttgttgatgctaac 23854012  T
Q  101 agatg 105  Q
    |||||    
T  23854013 agatg 23854017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 1e-26
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 40588936 - 40588832
Alignment:
Q  1 atttattcgggctcaaatgaaatggcaacggacaaatatgacagttttggagggggagacagtagccttacttgaggcccttcactttgctgatgctaac 100  Q
    ||||||||||||||||| ||||||||| ||| ||||||| |||||||||||||||||| |||||||| |||| ||||||||||  ||||| ||||| |||    
T  40588936 atttattcgggctcaaacgaaatggcagcgggcaaatataacagttttggagggggaggcagtagccgtactcgaggcccttcgttttgcggatgcaaac 40588837  T
Q  101 agatg 105  Q
    |||||    
T  40588836 agatg 40588832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 2e-25
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 478262 - 478172
Alignment:
Q  1 atttattcgggctcaaatgaaatggcaacggacaaatatgacagttttggagggggagacagtagccttacttgaggcccttcactttgct 91  Q
    |||||| ||||||||||  |||||||||||| |||||||||||||||||||||||||| ||||||||||||| || ||| |||||||||||    
T  478262 atttatccgggctcaaacaaaatggcaacgggcaaatatgacagttttggagggggaggcagtagccttactcgatgccattcactttgct 478172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 6e-22
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 7127204 - 7127308
Alignment:
Q  1 atttattcgggctcaaatgaaatggcaacggacaaatatgacagttttggagggggagacagtagccttacttgaggcccttcactttgctgatgctaac 100  Q
    ||||||||| || |||||||||||| ||||| ||||||||| ||||||||||||||||  |||||||||||| || ||  |||||||||||||||  |||    
T  7127204 atttattcgtgcacaaatgaaatggaaacgggcaaatatgaaagttttggagggggaggtagtagccttactcgatgctattcactttgctgatgtgaac 7127303  T
Q  101 agatg 105  Q
    |||||    
T  7127304 agatg 7127308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 8451329 - 8451235
Alignment:
Q  1 atttattcgggctcaaatgaaatggcaacggacaaatatgacagttttggagggggagacagtagccttacttgaggcccttcactttgctgatg 95  Q
    |||||||||||||||||  ||| || | ||| ||||||||||||| |||||||||||| ||||||| ||||| ||  || ||||||| |||||||    
T  8451329 atttattcgggctcaaacaaaaaggaagcgggcaaatatgacagtgttggagggggaggcagtagctttactcgattccattcacttcgctgatg 8451235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 35 - 95
Target Start/End: Original strand, 9496797 - 9496857
Alignment:
Q  35 aatatgacagttttggagggggagacagtagccttacttgaggcccttcactttgctgatg 95  Q
    |||||||||||||||||||| ||| |||||||||||||||| | | ||||||||| |||||    
T  9496797 aatatgacagttttggagggtgaggcagtagccttacttgatgacattcactttgttgatg 9496857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.000000000008
Query Start/End: Original strand, 9 - 72
Target Start/End: Complemental strand, 185788 - 185726
Alignment:
Q  9 gggctcaaatgaaatggcaacggacaaatatgacagttttggagggggagacagtagccttact 72  Q
    ||||||||| ||||||| ||||| ||||||||||||||||||| ||||||  ||||||||||||    
T  185788 gggctcaaacgaaatggaaacgggcaaatatgacagttttgga-ggggaggaagtagccttact 185726  T

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Target: chr3 (Bit Score: 73; Significance: 7e-34; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 7e-34
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 53497013 - 53497117
Alignment:
Q  1 atttattcgggctcaaatgaaatggcaacggacaaatatgacagttttggagggggagacagtagccttacttgaggcccttcactttgctgatgctaac 100  Q
    |||||||||||||||||  ||||| || ||||||||| |||||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  53497013 atttattcgggctcaaacaaaatgacagcggacaaatgtgacagtttttgagggggaggcagtagccttactagaggcccttcactttgctgatgctaac 53497112  T
Q  101 agatg 105  Q
    |||||    
T  53497113 agatg 53497117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 6e-22
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 46007283 - 46007371
Alignment:
Q  1 atttattcgggctcaaatgaaatggcaacggacaaatatgacagttttggagggggagacagtagccttacttgaggcccttcactttg 89  Q
    ||||||||||||||||| ||||||||| ||| |||||| |||| ||||  ||||||||||||||||||||||||| ||| |||||||||    
T  46007283 atttattcgggctcaaacgaaatggcagcgggcaaatacgacaattttttagggggagacagtagccttacttgatgccattcactttg 46007371  T

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Target: chr3; HSP #3
Raw Score: 51; E-Value: 9e-21
Query Start/End: Original strand, 5 - 95
Target Start/End: Original strand, 2615478 - 2615568
Alignment:
Q  5 attcgggctcaaatgaaatggcaacggacaaatatgacagttttggagggggagacagtagccttacttgaggcccttcactttgctgatg 95  Q
    ||||||||||||| ||| ||||| ||| ||||||||| |||||||||||||||| ||||||||||||| || | | |||||||||||||||    
T  2615478 attcgggctcaaacgaattggcagcgggcaaatatgatagttttggagggggaggcagtagccttactcgatgtcgttcactttgctgatg 2615568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 6e-19
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 27941200 - 27941129
Alignment:
Q  1 atttattcgggctcaaatgaaatggcaacggacaaatatgacagttttggagggggagacagtagccttact 72  Q
    |||||||||| ||||||  |||||||| ||||||||||||| |||||||||||||||| |||||||||||||    
T  27941200 atttattcggactcaaacaaaatggcagcggacaaatatgatagttttggagggggaggcagtagccttact 27941129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 9e-18
Query Start/End: Original strand, 8 - 105
Target Start/End: Complemental strand, 647410 - 647313
Alignment:
Q  8 cgggctcaaatgaaatggcaacggacaaatatgacagttttggagggggagacagtagccttacttgaggcccttcactttgctgatgctaacagatg 105  Q
    |||||||||| ||||||||| ||| | |||||||||||| ||||||||||| ||| ||||||||| || | | |||||||||||||||  ||||||||    
T  647410 cgggctcaaacgaaatggcagcgggctaatatgacagttatggagggggaggcagcagccttactcgatgtcattcactttgctgatgtgaacagatg 647313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 4e-17
Query Start/End: Original strand, 5 - 89
Target Start/End: Original strand, 55199496 - 55199580
Alignment:
Q  5 attcgggctcaaatgaaatggcaacggacaaatatgacagttttggagggggagacagtagccttacttgaggcccttcactttg 89  Q
    ||||||||||||| |||||| || | || ||||||||||||||||||||||||| |||| |||||||| || ||| |||||||||    
T  55199496 attcgggctcaaacgaaatgacagctgataaatatgacagttttggagggggaggcagttgccttactcgatgccattcactttg 55199580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 42340483 - 42340379
Alignment:
Q  1 atttattcgggctcaaatgaaatggcaacggacaaatatgacagttttggagggggagacagtagccttacttgaggcccttcactttgctgatgctaac 100  Q
    |||||||||||||||||  |||||||| ||| || |||||||||| |||||||||||| || ||||| |||| || | | |||||||||| ||||  |||    
T  42340483 atttattcgggctcaaacaaaatggcagcgggcagatatgacagtgttggagggggaggcaatagccctactcgatgtcattcactttgcagatgtgaac 42340384  T
Q  101 agatg 105  Q
    |||||    
T  42340383 agatg 42340379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 95
Target Start/End: Complemental strand, 11020375 - 11020292
Alignment:
Q  12 ctcaaatgaaatggcaacggacaaatatgacagttttggagggggagacagtagccttacttgaggcccttcactttgctgatg 95  Q
    |||||||||||||  |  |||||||||||||| |||||||||||||||||  ||| ||||| || ||  || ||||||||||||    
T  11020375 ctcaaatgaaatgaaagtggacaaatatgacacttttggagggggagacatcagctttactcgatgctatttactttgctgatg 11020292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 4e-29; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 4e-29
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 16098471 - 16098571
Alignment:
Q  1 atttattcgggctcaaatgaaatggcaacggacaaatatgacagttttggagggggagacagtagccttacttgaggcccttcactttgctgatgctaac 100  Q
    ||||||||||||||||| ||||||| |||| |||||||||||| |||||||||| |||  |||||||||||| ||||||||||| |||||||||||||||    
T  16098471 atttattcgggctcaaacgaaatggaaacgaacaaatatgacaattttggagggagaggtagtagccttactagaggcccttcaatttgctgatgctaac 16098570  T
Q  101 a 101  Q
    |    
T  16098571 a 16098571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 4e-29
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 16731914 - 16732018
Alignment:
Q  1 atttattcgggctcaaatgaaatggcaacggacaaatatgacagttttggagggggagacagtagccttacttgaggcccttcactttgctgatgctaac 100  Q
    ||||||||||||||||| |||||||||  || ||||||||||||| |||||||||||| ||||||||||||| |||||| |||||| ||||||||| |||    
T  16731914 atttattcgggctcaaacgaaatggcagagggcaaatatgacagtattggagggggaggcagtagccttactcgaggccattcactctgctgatgcgaac 16732013  T
Q  101 agatg 105  Q
    |||||    
T  16732014 agatg 16732018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 4e-29
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 17710048 - 17710152
Alignment:
Q  1 atttattcgggctcaaatgaaatggcaacggacaaatatgacagttttggagggggagacagtagccttacttgaggcccttcactttgctgatgctaac 100  Q
    ||||||||||||||||| |||||||||  || ||||||||||||| |||||||||||| ||||||||||||| |||||| |||||| ||||||||| |||    
T  17710048 atttattcgggctcaaacgaaatggcagagggcaaatatgacagtattggagggggaggcagtagccttactcgaggccattcactctgctgatgcgaac 17710147  T
Q  101 agatg 105  Q
    |||||    
T  17710148 agatg 17710152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 6e-22
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 9328808 - 9328704
Alignment:
Q  1 atttattcgggctcaaatgaaatggcaacggacaaatatgacagttttggagggggagacagtagccttacttgaggcccttcactttgctgatgctaac 100  Q
    ||||||||| ||||||| |||||||||||||  ||||||||| ||||||||||||||| ||||||||||||| |  ||  |||||||||||||||  |||    
T  9328808 atttattcgagctcaaacgaaatggcaacgggaaaatatgactgttttggagggggaggcagtagccttactcgctgctattcactttgctgatgtaaac 9328709  T
Q  101 agatg 105  Q
    |||||    
T  9328708 agatg 9328704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 1e-19
Query Start/End: Original strand, 2 - 105
Target Start/End: Original strand, 1581597 - 1581701
Alignment:
Q  2 tttattcgggctcaaatgaaatggcaacggacaaatatgacagttttggaggggg-agacagtagccttacttgaggcccttcactttgctgatgctaac 100  Q
    ||||| |||||||||| |||||||||  || ||||||| | |||||| ||||||| |  ||||||||||||| ||||||||||||||||||||||| |||    
T  1581597 tttatccgggctcaaacgaaatggcagagggcaaatattatagtttttgaggggggatgcagtagccttactcgaggcccttcactttgctgatgcgaac 1581696  T
Q  101 agatg 105  Q
    |||||    
T  1581697 agatg 1581701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 6e-19
Query Start/End: Original strand, 2 - 105
Target Start/End: Complemental strand, 29201160 - 29201057
Alignment:
Q  2 tttattcgggctcaaatgaaatggcaacggacaaatatgacagttttggagggggagacagtagccttacttgaggcccttcactttgctgatgctaaca 101  Q
    |||||||||||||||| |||||| || ||||||||||||||||||||||||||||||  || |   |||||||| | | |||||||||||||||  ||||    
T  29201160 tttattcgggctcaaacgaaatgacagcggacaaatatgacagttttggagggggaggtagcatgtttacttgatgtcattcactttgctgatgtgaaca 29201061  T
Q  102 gatg 105  Q
    ||||    
T  29201060 gatg 29201057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 30493815 - 30493723
Alignment:
Q  1 atttattcgggctcaaatgaaatggcaacggacaaatatgacagttttggagggggagacagtagccttacttgaggcccttcactttgctgat 94  Q
    ||||| || |||||||| ||||||||| | ||||| ||||||||||||||| |||||| |||||||||||||||| | | ||||||| ||||||    
T  30493815 atttactcaggctcaaacgaaatggcagcagacaagtatgacagttttgga-ggggaggcagtagccttacttgatgtcgttcacttagctgat 30493723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.000000000000009
Query Start/End: Original strand, 5 - 105
Target Start/End: Original strand, 17877393 - 17877493
Alignment:
Q  5 attcgggctcaaatgaaatggcaacggacaaatatgacagttttggagggggagacagtagccttacttgaggcccttcactttgctgatgctaacagat 104  Q
    ||||| ||||||| ||||| ||| |||  |||||||||||| ||||||||||||  ||||||||||||  |||||||||||||| |  |||| |||||||    
T  17877393 attcgtgctcaaacgaaatcgcagcggggaaatatgacagtattggagggggaggaagtagccttactcaaggcccttcactttacaaatgcgaacagat 17877492  T
Q  105 g 105  Q
    |    
T  17877493 g 17877493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.0000000000005
Query Start/End: Original strand, 5 - 90
Target Start/End: Original strand, 22289226 - 22289311
Alignment:
Q  5 attcgggctcaaatgaaatggcaacggacaaatatgacagttttggagggggagacagtagccttacttgaggcccttcactttgc 90  Q
    |||||| |||| | ||||||||||||  ||||||||||||||||||||||||||   || |||||||| || ||| ||||||||||    
T  22289226 attcggactcagacgaaatggcaacgagcaaatatgacagttttggagggggaggtggttgccttactcgatgccattcactttgc 22289311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.0000000000005
Query Start/End: Original strand, 29 - 105
Target Start/End: Complemental strand, 30824651 - 30824577
Alignment:
Q  29 cggacaaatatgacagttttggagggggagacagtagccttacttgaggcccttcactttgctgatgctaacagatg 105  Q
    |||| |||||||||||||||| ||||  || ||||||||||||| ||||||||||||||| || |||| ||||||||    
T  30824651 cggataaatatgacagttttgaaggg--aggcagtagccttactcgaggcccttcacttttctaatgcgaacagatg 30824577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 87
Target Start/End: Original strand, 3601683 - 3601728
Alignment:
Q  42 cagttttggagggggagacagtagccttacttgaggcccttcactt 87  Q
    |||||||||||||||||   ||||||||||| ||||||||||||||    
T  3601683 cagttttggagggggaggtggtagccttactcgaggcccttcactt 3601728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 34578484 - 34578437
Alignment:
Q  1 atttattcgggctcaaatgaaatggcaacggacaaatatgacagtttt 48  Q
    ||||||||||||||| | |||||| |||||  ||||||||||||||||    
T  34578484 atttattcgggctcagacgaaatgacaacgagcaaatatgacagtttt 34578437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 4e-29; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 4e-29
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 14680143 - 14680247
Alignment:
Q  1 atttattcgggctcaaatgaaatggcaacggacaaatatgacagttttggagggggagacagtagccttacttgaggcccttcactttgctgatgctaac 100  Q
    |||||||  |||||||||||||||||| |||  |||||||||||| |||||||||||| ||||||||||||| ||||||||||||| ||||||||| |||    
T  14680143 atttattatggctcaaatgaaatggcagcgggaaaatatgacagtattggagggggaggcagtagccttactcgaggcccttcactctgctgatgcaaac 14680242  T
Q  101 agatg 105  Q
    |||||    
T  14680243 agatg 14680247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 6e-28
Query Start/End: Original strand, 11 - 105
Target Start/End: Complemental strand, 29368252 - 29368158
Alignment:
Q  11 gctcaaatgaaatggcaacggacaaatatgacagttttggagggggagacagtagccttacttgaggcccttcactttgctgatgctaacagatg 105  Q
    ||||||| ||||||||| |||| ||||||||||||||||||||||||| || || ||||||| |||||||||||||||||||||||||| |||||    
T  29368252 gctcaaaagaaatggcagcggataaatatgacagttttggagggggaggcaatatccttactcgaggcccttcactttgctgatgctaatagatg 29368158  T

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Target: chr6; HSP #3
Raw Score: 62; E-Value: 3e-27
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 28107120 - 28107209
Alignment:
Q  1 atttattcgggctcaaatgaaatggcaacggacaaatatgacagttttggagggggagacagtagccttacttgaggcccttcactttgc 90  Q
    |||||||| |||||||| ||||||||| |||||| ||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||    
T  28107120 atttattcaggctcaaacgaaatggcagcggacagatatgacagttttggagggggaggcagtagccttacttgatgccattcactttgc 28107209  T

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Target: chr6; HSP #4
Raw Score: 49; E-Value: 1e-19
Query Start/End: Original strand, 3 - 95
Target Start/End: Complemental strand, 15606198 - 15606106
Alignment:
Q  3 ttattcgggctcaaatgaaatggcaacggacaaatatgacagttttggagggggagacagtagccttacttgaggcccttcactttgctgatg 95  Q
    |||||||||||||||  |||||||| |||  ||| ||||||||||||||||||||| ||||||||||||| || ||| ||||||||| |||||    
T  15606198 ttattcgggctcaaacaaaatggcagcgggaaaacatgacagttttggagggggaggcagtagccttactcgatgccattcactttgttgatg 15606106  T

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Target: chr6; HSP #5
Raw Score: 47; E-Value: 2e-18
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 30802197 - 30802103
Alignment:
Q  1 atttattcgggctcaaatgaaatggcaacggacaaatatgacagttttggagggggagacagtagccttacttgaggcccttcactttgctgatg 95  Q
    ||||||||||||| |||  |||||||| ||| |||||||||||||||||| ||||||| ||||||||||||| || ||| || ||||||| ||||    
T  30802197 atttattcgggcttaaacaaaatggcagcgggcaaatatgacagttttggtgggggaggcagtagccttactagatgccatttactttgcagatg 30802103  T

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Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.000000000000009
Query Start/End: Original strand, 13 - 105
Target Start/End: Complemental strand, 19691073 - 19690981
Alignment:
Q  13 tcaaatgaaatggcaacggacaaatatgacagttttggagggggagacagtagccttacttgaggcccttcactttgctgatgctaacagatg 105  Q
    ||||| |||||| ||||||||||||||||| |||||||| |||||| || |||||||| | || | | |||||||||||||||  ||||||||    
T  19691073 tcaaacgaaatgacaacggacaaatatgaccgttttggaaggggaggcaatagccttattcgatgtcattcactttgctgatgtgaacagatg 19690981  T

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Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 11731872 - 11731781
Alignment:
Q  1 atttattcgggctcaaatgaaatggcaacggacaaatatgacagttttggagggggagacagtagccttacttgaggcccttcactttgctgatg 95  Q
    |||||| ||||||||||  |||||||| ||| ||||||||||||||||||| |||||| ||| |||||  || ||| | ||||||||||||||||    
T  11731872 atttatccgggctcaaacaaaatggcagcgggcaaatatgacagttttgga-ggggaggcagcagcct--ctcgagactcttcactttgctgatg 11731781  T

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Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 15053381 - 15053289
Alignment:
Q  1 atttattcgggctcaaatgaaatggcaacggacaaatatgacagttttggagggggagacagtagccttacttgaggcccttcactttgctga 93  Q
    |||||||||||||||||  | ||| || |||  |||||||| ||| |||||||||||| ||||||||||||| || ||| ||| | |||||||    
T  15053381 atttattcgggctcaaacaagatgacagcgggtaaatatgatagtgttggagggggaggcagtagccttactcgatgccattcgccttgctga 15053289  T

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Target: scaffold0446 (Bit Score: 48; Significance: 6e-19; HSPs: 1)
Name: scaffold0446
Description:

Target: scaffold0446; HSP #1
Raw Score: 48; E-Value: 6e-19
Query Start/End: Original strand, 5 - 92
Target Start/End: Original strand, 171 - 258
Alignment:
Q  5 attcgggctcaaatgaaatggcaacggacaaatatgacagttttggagggggagacagtagccttacttgaggcccttcactttgctg 92  Q
    ||||||||||||| |||||| |||||  ||||||||||||||| |||||||||| |||| |||||||| || ||| ||||||||||||    
T  171 attcgggctcaaacgaaatgacaacgagcaaatatgacagtttgggagggggaggcagttgccttactcgatgccattcactttgctg 258  T

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