View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4290_high_9 (Length: 211)
Name: NF4290_high_9
Description: NF4290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4290_high_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 7 - 196
Target Start/End: Original strand, 26449166 - 26449355
Alignment:
| Q |
7 |
attattctgaccgttaaataaatcgaagttgatctccacacaattcatctgttccaaatacacattttctttcaatacacacttcacgccaatattctcc |
106 |
Q |
| |
|
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26449166 |
attattctgaccgttagataaatctaagttgatctccacacaattcatctgttcccaataaacattttctttcaatacacacttcacgccaatattctcc |
26449265 |
T |
|
| Q |
107 |
tccactttccaatattcacccaccactaccgaagtctctttccattgcctccctccgtcgtctcatcttccactaccgaaggcacatctc |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26449266 |
tccactttccaatattcacccaccactacctaagtctctttccaatgcctccctccgtcgtctcatcttccactaccgaaggcacatctc |
26449355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 92; Significance: 7e-45; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 85 - 196
Target Start/End: Original strand, 4077995 - 4078106
Alignment:
| Q |
85 |
acacttcacgccaatattctcctccactttccaatattcacccaccactaccgaagtctctttccattgcctccctccgtcgtctcatcttccactaccg |
184 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4077995 |
acacttcacaccaatattctcctctactttccaatattcacctaccactaccgaactctctctccattgcctccctccgtcgtctcatcttccactaccg |
4078094 |
T |
|
| Q |
185 |
aaggcacatctc |
196 |
Q |
| |
|
|||||||||||| |
|
|
| T |
4078095 |
aaggcacatctc |
4078106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 85 - 196
Target Start/End: Complemental strand, 16352034 - 16351923
Alignment:
| Q |
85 |
acacttcacgccaatattctcctccactttccaatattcacccaccactaccgaagtctctttccattgcctccctccgtcgtctcatcttccactaccg |
184 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||| ||| |
|
|
| T |
16352034 |
acacttcacaccaatattctcctccactttccaatattcacccaccactaccgaactctctctccatcgcctccctccgtcgtctcatcttccactgccg |
16351935 |
T |
|
| Q |
185 |
aaggcacatctc |
196 |
Q |
| |
|
|||||||||||| |
|
|
| T |
16351934 |
aaggcacatctc |
16351923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 82
Target Start/End: Original strand, 40946786 - 40946858
Alignment:
| Q |
10 |
attctgaccgttaaataaatcgaagttgatctccacacaattcatctgttccaaatacacattttctttcaat |
82 |
Q |
| |
|
|||||| |||||| ||||||| | ||||||||| ||||||| ||||| || | |||| ||||||||||||||| |
|
|
| T |
40946786 |
attctggccgttagataaatctatgttgatctctacacaatccatctatttccaataaacattttctttcaat |
40946858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 85 - 179
Target Start/End: Complemental strand, 18941214 - 18941120
Alignment:
| Q |
85 |
acacttcacgccaatattctcctccactttccaatattcacccaccactaccgaagtctctttccattgcctccctccgtcgtctcatcttccac |
179 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
18941214 |
acacttcacaccaatattctcctccactttccaatattcacccaccactgccgaactctctctccattgcctccctccgttgtctcatcttccac |
18941120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 1e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 85 - 179
Target Start/End: Complemental strand, 44712439 - 44712346
Alignment:
| Q |
85 |
acacttcacgccaatattctcctccactttccaatattcacccaccactaccgaagtctctttccattgcctccctccgtcgtctcatcttccac |
179 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||||||||||||| ||||| | || ||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
44712439 |
acacttcacaccaatattctcttccactttccaatattcacccagcacta-caaactctctctccattgcctccctccgtcgtctcatcttccac |
44712346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 23073432 - 23073361
Alignment:
| Q |
11 |
ttctgaccgttaaataaatcgaagttgatctccacacaattcatctgttccaaatacacattttctttcaat |
82 |
Q |
| |
|
||||| |||||||||||||| | || |||||||||||||| |||||||| |||| ||| ||||||||||| |
|
|
| T |
23073432 |
ttctggccgttaaataaatctatgtagatctccacacaatccatctgttgtcaataaacaatttctttcaat |
23073361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 70
Target Start/End: Original strand, 26955488 - 26955548
Alignment:
| Q |
10 |
attctgaccgttaaataaatcgaagttgatctccacacaattcatctgttccaaatacaca |
70 |
Q |
| |
|
||||||||||||| ||||||| | ||||||||| ||||||| ||||| || | |||||||| |
|
|
| T |
26955488 |
attctgaccgttagataaatctatgttgatctctacacaatccatctatttccaatacaca |
26955548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University