View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4290_low_10 (Length: 299)

Name: NF4290_low_10
Description: NF4290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4290_low_10
NF4290_low_10
[»] chr5 (4 HSPs)
chr5 (1-282)||(16464872-16465153)
chr5 (6-282)||(16471819-16472104)
chr5 (2-88)||(1683921-1684007)
chr5 (27-84)||(24179604-24179661)
[»] chr2 (1 HSPs)
chr2 (32-154)||(12261627-12261747)
[»] chr7 (1 HSPs)
chr7 (1-99)||(37205062-37205160)
[»] chr4 (2 HSPs)
chr4 (34-154)||(7848003-7848121)
chr4 (55-146)||(52418101-52418192)
[»] chr1 (2 HSPs)
chr1 (1-95)||(10254000-10254090)
chr1 (56-149)||(26586267-26586357)
[»] chr3 (3 HSPs)
chr3 (21-87)||(5050157-5050223)
chr3 (20-86)||(25052714-25052780)
chr3 (58-99)||(36455559-36455600)
[»] scaffold0007 (1 HSPs)
scaffold0007 (55-99)||(190396-190440)


Alignment Details
Target: chr5 (Bit Score: 274; Significance: 1e-153; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 16465153 - 16464872
Alignment:
Q  1 gaaaatgtcgtcagcgaaggtgagtatgacctgaattcttctatctttggtgaaagtgagagatttgtttctaaattgagagtgagatagaaaaagaaat 100  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  16465153 gaaaatgtcgtcagcgaaggtgagtatgacctgaattcttgtatctttggtgaaagtgagagatttgtttctaaattgagagtgagatcgaaaaagaaat 16465054  T
Q  101 taaaaggattataagtttgtttcctttcaaattttgtttagtttgagctcttttcagaaacaaattgttttttcaataaaacttagactcataaactcat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16465053 taaaaggattataagtttgtttcctttcaaattttgtttagtttgagctcttttcagaaacaaattgttttttcaataaaacttagactcataaactcat 16464954  T
Q  201 catagactcgcgagtctacacgagtatgtcgatctagctcaaaaaagattatatgtgtgattccactcgtttgtgccttcta 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16464953 catagactcgcgagtctacacgagtatgtcgatctagctcaaaaaagattatatgtgtgattccactcgtttgtgccttcta 16464872  T

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Target: chr5; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 6 - 282
Target Start/End: Complemental strand, 16472104 - 16471819
Alignment:
Q  6 tgtcgtcagcgaaggtgagtatgacctgaattcttctatctttggtgaaagtgagagatttgtttctaaattgagagtgagatagaaaaagaaattaaaa 105  Q
    |||||||| || ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||  |||||||||||||| |    
T  16472104 tgtcgtcaacgtaggtgagtatgacctgaattcttctatttttggtgagagtgagagatttgtttctaaattgagagtgagaccgaaaaagaaattaaga 16472005  T
Q  106 ggatt----ataagtttgtttcctttcaaattttgtttagtttgagc-tcttttcagaaacaaattgttttttcaataaaact--tagactcataaactc 198  Q
    |||||     ||||||| |||||||| || ||||||||||||||||| | |||||| ||||||||||||||||||| ||||||  ||||||  |||||||    
T  16472004 ggattctaagtaagtttttttcctttaaatttttgtttagtttgagctttttttcaaaaacaaattgttttttcaaaaaaactcatagacttgtaaactc 16471905  T
Q  199 atcatagactcgcgagtctacacgagtat-gtcga-tctagctcaaaaaagattatatgtgtgattccactcgtttgtgccttcta 282  Q
    |||||| |||| ||||||||  ||||| |   ||| |||||||||||||| ||| |||| | |||||||||   ||||||||||||    
T  16471904 atcataaactcacgagtctatgcgagtctacacgagtctagctcaaaaaatattctatgcgcgattccacttagttgtgccttcta 16471819  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 88
Target Start/End: Complemental strand, 1684007 - 1683921
Alignment:
Q  2 aaaatgtcgtcagcgaaggtgagtatgacctgaattcttctatctttggtgaaagtgagagatttgtttctaaattgagagtgagat 88  Q
    ||||||||||  | |||||||| || ||||||||||||||||| |||||||| | || ||| | |||||||||| ||||||||||||    
T  1684007 aaaatgtcgttggtgaaggtgaatacgacctgaattcttctatatttggtgagaatgtgagttatgtttctaaactgagagtgagat 1683921  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 84
Target Start/End: Original strand, 24179604 - 24179661
Alignment:
Q  27 tgacctgaattcttctatctttggtgaaagtgagagatttgtttctaaattgagagtg 84  Q
    |||||| ||||||||||||||||||||  ||||||| |||||||||||||||| ||||    
T  24179604 tgaccttaattcttctatctttggtgagggtgagagttttgtttctaaattgaaagtg 24179661  T

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Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 32 - 154
Target Start/End: Original strand, 12261627 - 12261747
Alignment:
Q  32 tgaattcttctatctttggtgaaagtgagagatttgtttctaaattgagagtgagatagaaaaagaaattaaaaggattata-agtttgtttcctttcaa 130  Q
    ||||||||||||||||  |||| |||||||| |||||||||||||||||||||| || |||||||||   ||||||||| || | ||| |||||||||||    
T  12261627 tgaattcttctatcttgagtgagagtgagagttttgtttctaaattgagagtgaaatcgaaaaagaa---aaaaggattctagattttatttcctttcaa 12261723  T
Q  131 attttgtttagtttgagctctttt 154  Q
    |||||||||| |||||||| ||||    
T  12261724 attttgtttaatttgagctttttt 12261747  T

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Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 37205160 - 37205062
Alignment:
Q  1 gaaaatgtcgtcagcgaaggtgagtatgacctgaattcttctatctttggtgaaagtgagagatttgtttctaaattgagagtgagatagaaaaagaaa 99  Q
    ||||||||||||   ||| |||||  |||| |||||||||| ||||||||||| |||||||| |||||||| |||||||||||||| ||||||||||||    
T  37205160 gaaaatgtcgtcgaagaatgtgagcgtgacttgaattcttccatctttggtgagagtgagagttttgtttcaaaattgagagtgaggtagaaaaagaaa 37205062  T

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Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 34 - 154
Target Start/End: Complemental strand, 7848121 - 7848003
Alignment:
Q  34 aattcttctatctttggtgaaagtgagagatttgtttctaaattgagagtgagatagaaaaagaaattaaaaggattataag-tttgtttcctttcaaat 132  Q
    ||||||||||||||| |||| |||||||  ||||||||||||| ||||||||||| |||||| ||   || |||||| || | ||| |||||||||| ||    
T  7848121 aattcttctatctttcgtgagagtgagaattttgtttctaaatggagagtgagatcgaaaaataa---aagaggattttaggttttttttcctttcatat 7848025  T
Q  133 tttgtttagtttgagctctttt 154  Q
    ||||||||||| ||||| ||||    
T  7848024 tttgtttagttggagctttttt 7848003  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 55 - 146
Target Start/End: Original strand, 52418101 - 52418192
Alignment:
Q  55 agtgagagatttgtttctaaattgagagtgagatagaaaaagaaattaaaaggattataagtttgtt---tcctttcaaattttgtttagtttga 146  Q
    |||||||| ||||||| ||||||||||||||||| |||||||||   || |||||| ||||||| ||   |||||||||||||||||||||||||    
T  52418101 agtgagagttttgtttttaaattgagagtgagatcgaaaaagaa---aagaggattctaagttttttttctcctttcaaattttgtttagtttga 52418192  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 10254000 - 10254090
Alignment:
Q  1 gaaaatgtcgtcagcgaaggtgagtatgacctgaattcttctatctttggtgaaagtgagagatttgtttctaaattgagagtgagatagaaaaa 95  Q
    ||||||||||||  ||||||||    |||||| |||||||||||||||||| |||||||||| ||||||| | |  |||||||||||| ||||||    
T  10254000 gaaaatgtcgtcgacgaaggtg----tgacctaaattcttctatctttggtcaaagtgagagttttgtttattagatgagagtgagatcgaaaaa 10254090  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 56 - 149
Target Start/End: Complemental strand, 26586357 - 26586267
Alignment:
Q  56 gtgagagatttgtttctaaattgagagtgagatagaaaaagaaattaaaaggattataagtttgttt-cctttcaaattttgtttagtttgagct 149  Q
    ||||||| ||||||||||||||||||||||||   ||||||| |    ||||| | || |||| ||| |||||||||||||||||||||||||||    
T  26586357 gtgagagttttgtttctaaattgagagtgagagcaaaaaagata----aaggactctaggttttttttcctttcaaattttgtttagtttgagct 26586267  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 87
Target Start/End: Complemental strand, 5050223 - 5050157
Alignment:
Q  21 tgagtatgacctgaattcttctatctttggtgaaagtgagagatttgtttctaaattgagagtgaga 87  Q
    ||||| |||||| ||||||||||||||| |||| |||||||| | | ||| ||||||||||||||||    
T  5050223 tgagtgtgaccttaattcttctatctttagtgagagtgagagttgtttttttaaattgagagtgaga 5050157  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 25052714 - 25052780
Alignment:
Q  20 gtgagtatgacctgaattcttctatctttggtgaaagtgagagatttgtttctaaattgagagtgag 86  Q
    ||||| || ||||||||||||||||||||| ||| |||| |||  | ||||||||||||||||||||    
T  25052714 gtgagcataacctgaattcttctatctttgatgagagtgggaggatcgtttctaaattgagagtgag 25052780  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 99
Target Start/End: Original strand, 36455559 - 36455600
Alignment:
Q  58 gagagatttgtttctaaattgagagtgagatagaaaaagaaa 99  Q
    ||||| ||| ||||||||||||||||||||| ||||||||||    
T  36455559 gagagttttatttctaaattgagagtgagatcgaaaaagaaa 36455600  T

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Target: scaffold0007 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 99
Target Start/End: Original strand, 190396 - 190440
Alignment:
Q  55 agtgagagatttgtttctaaattgagagtgagatagaaaaagaaa 99  Q
    ||||| || |||||||||||||||||| |||||| ||||||||||    
T  190396 agtgaaagttttgtttctaaattgagaatgagatcgaaaaagaaa 190440  T

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