View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4290_low_12 (Length: 256)

Name: NF4290_low_12
Description: NF4290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4290_low_12
NF4290_low_12
[»] chr1 (3 HSPs)
chr1 (1-247)||(27045424-27045670)
chr1 (33-131)||(22626469-22626567)
chr1 (1-136)||(21785854-21785986)
[»] chr4 (8 HSPs)
chr4 (1-247)||(15349255-15349501)
chr4 (1-247)||(14687183-14687435)
chr4 (1-243)||(42711186-42711434)
chr4 (1-136)||(45240268-45240404)
chr4 (1-136)||(11498024-11498159)
chr4 (1-123)||(18290701-18290823)
chr4 (17-126)||(11918125-11918233)
chr4 (1-137)||(10629417-10629550)
[»] chr6 (9 HSPs)
chr6 (1-247)||(22062922-22063168)
chr6 (1-247)||(19586985-19587222)
chr6 (1-137)||(18188980-18189116)
chr6 (1-153)||(23519162-23519314)
chr6 (1-126)||(17818194-17818319)
chr6 (1-82)||(18852742-18852820)
chr6 (1-44)||(29685293-29685336)
chr6 (1-41)||(24390286-24390326)
chr6 (219-247)||(29685084-29685112)
[»] chr3 (11 HSPs)
chr3 (1-247)||(6813419-6813665)
chr3 (1-250)||(12777915-12778170)
chr3 (1-247)||(15024254-15024506)
chr3 (1-136)||(20562017-20562152)
chr3 (1-136)||(20564325-20564460)
chr3 (5-136)||(20559709-20559840)
chr3 (1-137)||(13090218-13090351)
chr3 (1-137)||(9362368-9362501)
chr3 (1-137)||(13096380-13096513)
chr3 (1-45)||(3246924-3246968)
chr3 (1-119)||(20153465-20153580)
[»] chr7 (13 HSPs)
chr7 (1-247)||(540170-540416)
chr7 (1-247)||(16327178-16327430)
chr7 (1-247)||(9581453-9581705)
chr7 (1-247)||(9729305-9729557)
chr7 (1-247)||(4311279-4311530)
chr7 (1-247)||(8783500-8783752)
chr7 (84-247)||(14223144-14223313)
chr7 (1-137)||(23513736-23513872)
chr7 (1-127)||(4462118-4462244)
chr7 (1-137)||(13741088-13741224)
chr7 (1-133)||(5395811-5395943)
chr7 (1-137)||(12565670-12565806)
chr7 (1-140)||(10439749-10439888)
[»] scaffold0090 (1 HSPs)
scaffold0090 (1-247)||(29312-29564)
[»] chr8 (4 HSPs)
chr8 (1-247)||(20000852-20001101)
chr8 (1-136)||(20040480-20040615)
chr8 (1-140)||(21855187-21855323)
chr8 (1-136)||(17619412-17619544)
[»] scaffold0035 (1 HSPs)
scaffold0035 (1-247)||(51964-52216)
[»] chr5 (7 HSPs)
chr5 (1-247)||(23712118-23712370)
chr5 (1-131)||(20446256-20446386)
chr5 (1-137)||(21282321-21282458)
chr5 (1-123)||(18487474-18487596)
chr5 (1-126)||(23602051-23602173)
chr5 (1-137)||(24939200-24939333)
chr5 (1-120)||(24218516-24218632)
[»] scaffold0485 (1 HSPs)
scaffold0485 (1-247)||(11315-11568)
[»] chr2 (2 HSPs)
chr2 (1-137)||(24500997-24501133)
chr2 (1-145)||(25339517-25339661)
[»] scaffold0220 (1 HSPs)
scaffold0220 (18-137)||(11741-11860)
[»] scaffold0222 (1 HSPs)
scaffold0222 (1-123)||(18509-18631)
[»] scaffold0566 (1 HSPs)
scaffold0566 (1-136)||(1275-1410)
[»] scaffold0026 (1 HSPs)
scaffold0026 (33-137)||(17034-17138)
[»] scaffold0113 (1 HSPs)
scaffold0113 (1-137)||(38044-38177)
[»] scaffold1184 (1 HSPs)
scaffold1184 (7-41)||(537-571)
[»] scaffold0012 (2 HSPs)
scaffold0012 (1-79)||(12855-12930)
scaffold0012 (1-79)||(8746-8821)


Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 27045670 - 27045424
Alignment:
Q  1 gtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27045670 gtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgat 27045571  T
Q  101 tctccatgcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagtagtataaaagtttagataatagttctcatctatcctcttgatc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27045570 tctccatgcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagtagtataaaagtttagataatagttctcatctatcctcttgatc 27045471  T
Q  201 ccttgattcatactcaccccaaacttcttagcaataaaagtgatgat 247  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  27045470 ccttgattcatactcaccccaaacttcttagcaataaaagtgatgat 27045424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 33 - 131
Target Start/End: Original strand, 22626469 - 22626567
Alignment:
Q  33 ttttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgattctccatgcatattggtaattgtgagtaggg 131  Q
    ||||| |||||| ||||||||||||| ||||||||||||||||||||||| ||||||||  || ||| ||||||  |||||||||||||||||| ||||    
T  22626469 ttttctaccaccaccggattagtaatatccgaattaggtagaataatcaagcaattagcattattgactctccactcatattggtaattgtgagaaggg 22626567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 21785854 - 21785986
Alignment:
Q  1 gtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgat 100  Q
    |||||||||||||||| ||||||||||   | ||||| ||||||| |||||||||||| || ||||||||||||| ||||||  |||||||  || |||     
T  21785854 gtacctgtgggttagtgccaacataaa---agttttctaccaccttcggattagtaatatctgaattaggtagaaaaatcaagaaattagcattattgac 21785950  T
Q  101 tctccatgcatattggtaattgtgagtagggtcatg 136  Q
    ||||||  ||| |||||| |||| || |||| ||||    
T  21785951 tctccactcatgttggtacttgttagaagggccatg 21785986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 243; Significance: 1e-135; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 15349255 - 15349501
Alignment:
Q  1 gtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15349255 gtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgat 15349354  T
Q  101 tctccatgcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagtagtataaaagtttagataatagttctcatctatcctcttgatc 200  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15349355 tctccattcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagtagtataaaagtttagataatagttctcatctatcctcttgatc 15349454  T
Q  201 ccttgattcatactcaccccaaacttcttagcaataaaagtgatgat 247  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  15349455 ccttgattcatactcaccccaaacttcttagcaataaaagtgatgat 15349501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 14687183 - 14687435
Alignment:
Q  1 gtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgat 100  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||    
T  14687183 gtacctgtgggttagtaccaacataaagcaaattttccaccgcctccggattagtaatgtccgaattaggtagcataatcaaacaattagctctaataat 14687282  T
Q  101 tctccatgcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagt------agtataaaagtttagataatagttctcatctatcctc 194  Q
    |||||||  ||||||||||||||||||||||||||||||| ||||||||||||||||      |||||| |||||||||||||||||||| |||||||||    
T  14687283 tctccatttatattggtaattgtgagtagggtcatgggttctaaggaatgacaaagtagtgagagtatataagtttagataatagttctcctctatcctc 14687382  T
Q  195 ttgatcccttgattcatactcaccccaaacttcttagcaataaaagtgatgat 247  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  14687383 ttgatcccttgattcacactcaccccaaacttcttagcaataaaagtgatgat 14687435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 42711186 - 42711434
Alignment:
Q  1 gtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||    
T  42711186 gtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagttctaataat 42711285  T
Q  101 tctccatgcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagt------agtataaaagtttagataatagttctcatctatcctc 194  Q
    ||||||| ||||||||||||| |||||| ||||||||||| ||||||| ||||||||      |||||| |||||| ||||||| || ||||||||||||    
T  42711286 tctccattcatattggtaattatgagtatggtcatgggttctaaggaaagacaaagtagtgagagtatataagtttggataataattttcatctatcctc 42711385  T
Q  195 ttgatcccttgattcatactcaccccaaacttcttagcaataaaagtga 243  Q
    ||||||| |||||||| |||||||| |||| ||||||||||||||||||    
T  42711386 ttgatcctttgattcacactcaccctaaacctcttagcaataaaagtga 42711434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 45240268 - 45240404
Alignment:
Q  1 gtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaa-ttagctctaatga 99  Q
    |||||||||||||||| |||||||||| ||| ||||| |||||||||||||||||||| | |||||| |||||||||||||| ||| |||||  || |||    
T  45240268 gtacctgtgggttagtgccaacataaaccaagttttctaccacctccggattagtaatattcgaatttggtagaataatcaagcaatttagcgttattga 45240367  T
Q  100 ttctccatgcatattggtaattgtgagtagggtcatg 136  Q
     ||||||  |||||||||||||||||| |||| ||||    
T  45240368 ctctccactcatattggtaattgtgagaagggccatg 45240404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 11498024 - 11498159
Alignment:
Q  1 gtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgat 100  Q
    |||||||||||||||| |||||||||| ||| ||||| |||||||||||||||||||| |  |||||||||||||||||||| |||||| |   | |||     
T  11498024 gtacctgtgggttagtgccaacataaaccaagttttctaccacctccggattagtaatatttgaattaggtagaataatcaagcaattaacataattgac 11498123  T
Q  101 tctccatgcatattggtaattgtgagtagggtcatg 136  Q
    ||||||  ||||||||||||||| || |||||||||    
T  11498124 tctccactcatattggtaattgttagaagggtcatg 11498159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 18290823 - 18290701
Alignment:
Q  1 gtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgat 100  Q
    |||||||||||||||| |||||||||| ||| ||||| | |||||||||||||||||| || ||||||||||||||||||||  |||| ||  || |||     
T  18290823 gtacctgtgggttagtgccaacataaaccaagttttctatcacctccggattagtaatatctgaattaggtagaataatcaataaatttgcattattgaa 18290724  T
Q  101 tctccatgcatattggtaattgt 123  Q
    | ||||  |||||||||||||||    
T  18290723 tttccactcatattggtaattgt 18290701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 17 - 126
Target Start/End: Original strand, 11918125 - 11918233
Alignment:
Q  17 accaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgattctccatgcatattgg 116  Q
    ||||||||||| ||| ||||||||||||| ||| ||||| ||||||| ||||||||||||||||||| ||||||| ||| ||| | ||||  ||||||||    
T  11918125 accaacataaaacaatttttccaccaccttcgggttagttatgtccggattaggtagaataatcaaa-aattagccctattgactttccactcatattgg 11918223  T
Q  117 taattgtgag 126  Q
    ||||||||||    
T  11918224 taattgtgag 11918233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 10629550 - 10629417
Alignment:
Q  1 gtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgat 100  Q
    |||||||||||||||| ||||||||||   | ||||| ||| ||| |||||||||||| || ||||||||||||||||||||  |||||||  || |||     
T  10629550 gtacctgtgggttagtgccaacataaa---agttttctaccgccttcggattagtaatatctgaattaggtagaataatcaagaaattagcattattgac 10629454  T
Q  101 tctccatgcatattggtaattgtgagtagggtcatgg 137  Q
    ||||||  |||||||| ||||||||| |||| |||||    
T  10629453 tctccactcatattgggaattgtgagaagggccatgg 10629417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 235; Significance: 1e-130; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 22062922 - 22063168
Alignment:
Q  1 gtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22062922 gtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgat 22063021  T
Q  101 tctccatgcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagtagtataaaagtttagataatagttctcatctatcctcttgatc 200  Q
    ||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22063022 tctccatgcatgttggtaattgtgagtagagtcatggtttttaaggaatgacaaagtagtataaaagtttagataatagttctcatctatcctcttgatc 22063121  T
Q  201 ccttgattcatactcaccccaaacttcttagcaataaaagtgatgat 247  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  22063122 ccttgattcatactcaccccaaacttcttagcaataaaagtgatgat 22063168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 19586985 - 19587222
Alignment:
Q  1 gtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgat 100  Q
    |||||||||||||| |||||||||||| ||||||||||||||||||| |||||               ||||||||||||||||||||||||||||| ||    
T  19586985 gtacctgtgggttaataccaacataaatcaaattttccaccacctccagatta---------------ggtagaataatcaaacaattagctctaataat 19587069  T
Q  101 tctccatgcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagt------agtataaaagtttagataatagttctcatctatcctc 194  Q
    ||||| |  |||||||||||||| ||||||  |||||||| ||||||| ||||||||      |||||| |||| |||||||||||||   |||||||||    
T  19587070 tctccgtttatattggtaattgtaagtaggtccatgggttctaaggaaggacaaagtagtgagagtatataagtgtagataatagttcctctctatcctc 19587169  T
Q  195 ttgatcccttgattcatactcaccccaaacttcttagcaataaaagtgatgat 247  Q
    |||||||||||||||| |||||||||||||||| |||||||||| ||||||||    
T  19587170 ttgatcccttgattcagactcaccccaaacttcctagcaataaaggtgatgat 19587222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 18188980 - 18189116
Alignment:
Q  1 gtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgat 100  Q
    |||||||||||||||| |||||||||| ||| ||||| |||||||||||||||||| | ||||||||||||||||||||||| ||||||||  || |||     
T  18188980 gtacctgtgggttagtgccaacataaaccaagttttctaccacctccggattagtattatccgaattaggtagaataatcaagcaattagcattattgac 18189079  T
Q  101 tctccatgcatattggtaattgtgagtagggtcatgg 137  Q
    ||||||  |||||||||||||||||| ||||||||||    
T  18189080 tctccactcatattggtaattgtgagaagggtcatgg 18189116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 23519162 - 23519314
Alignment:
Q  1 gtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgat 100  Q
    ||||| |||||||||| ||||||||||||||||||||||||| |||||||||||| |||||| ||| |||||||||||||||||||||||| ||| | |     
T  23519162 gtacccgtgggttagttccaacataaagcaaattttccaccatctccggattagttatgtccaaataaggtagaataatcaaacaattagccctatttac 23519261  T
Q  101 tctccatgcatattggtaattgtgagtagggtcatgggttttaaggaatgaca 153  Q
    | |||   |||||||||| ||||||| ||||||||||||| ||||||| ||||    
T  23519262 tttccgcacatattggtagttgtgagaagggtcatgggttataaggaaagaca 23519314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 17818319 - 17818194
Alignment:
Q  1 gtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgat 100  Q
    |||||||||||||||| |||||||||| ||| ||||| ||||||| |||||||||||| || ||||||||||||||||||||  |||||||  || |||     
T  17818319 gtacctgtgggttagtgccaacataaaccaagttttctaccacctacggattagtaatatctgaattaggtagaataatcaagaaattagcattattgac 17818220  T
Q  101 tctccatgcatattggtaattgtgag 126  Q
    ||||||  ||||||||||||||||||    
T  17818219 tctccactcatattggtaattgtgag 17818194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 18852820 - 18852742
Alignment:
Q  1 gtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaa 82  Q
    |||||||||||||||| ||||||||||   ||||||| |||| ||||||||||||||| || ||||||||||||||||||||    
T  18852820 gtacctgtgggttagtgccaacataaa---aattttctaccatctccggattagtaatatctgaattaggtagaataatcaa 18852742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 29685336 - 29685293
Alignment:
Q  1 gtacctgtgggttagtaccaacataaagcaaattttccaccacc 44  Q
    |||||||||||||||||| |||||||||||||||||||||||||    
T  29685336 gtacctgtgggttagtactaacataaagcaaattttccaccacc 29685293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 24390286 - 24390326
Alignment:
Q  1 gtacctgtgggttagtaccaacataaagcaaattttccacc 41  Q
    ||||||||  |||||||||| ||||||||||||||||||||    
T  24390286 gtacctgtttgttagtaccagcataaagcaaattttccacc 24390326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 219 - 247
Target Start/End: Complemental strand, 29685112 - 29685084
Alignment:
Q  219 ccaaacttcttagcaataaaagtgatgat 247  Q
    |||||||||||||||||||||||||||||    
T  29685112 ccaaacttcttagcaataaaagtgatgat 29685084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 6813665 - 6813419
Alignment:
Q  1 gtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6813665 gtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgat 6813566  T
Q  101 tctccatgcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagtagtataaaagtttagataatagttctcatctatcctcttgatc 200  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6813565 tctccatgcatattggtaattgtgagtagagtcatggtttttaaggaatgacaaagtagtataaaagtttagataatagttctcatctatcctcttgatc 6813466  T
Q  201 ccttgattcatactcaccccaaacttcttagcaataaaagtgatgat 247  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||    
T  6813465 ccttgattcatactcacctcaaacttcttagcaataaaagtgatgat 6813419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 12777915 - 12778170
Alignment:
Q  1 gtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| ||    
T  12777915 gtacctgtgggttagtaccaacataaagcaaattttccaccacctccgaattagtaatgtccgaattaggtagaataatcaaacaattagttctaataat 12778014  T
Q  101 tctccatgcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagt------agtataaaagtttagataatagttctcatctatcctc 194  Q
    ||||||| ||||||| |||||||||||||||||||||||| ||||||| ||||||||      |||| | |||||| ||||||| || || |||||||||    
T  12778015 tctccattcatattgataattgtgagtagggtcatgggttctaaggaaggacaaagtagtgagagtaaataagtttggataataattttcctctatcctc 12778114  T
Q  195 ttgatcccttgattcatactcaccccaaacttcttagcaataaaagtgatgatgtc 250  Q
    |||||||||||||||| |||||||| |||| ||||||||||||||| |||||||||    
T  12778115 ttgatcccttgattcacactcaccctaaacctcttagcaataaaagggatgatgtc 12778170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 15024506 - 15024254
Alignment:
Q  1 gtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgat 100  Q
    |||| ||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||| | ||||||||||||||| ||||||||||||||| | ||    
T  15024506 gtacatgtggattagtaccaacataatgcaaattttccaccacctccggattagttatgtctggattaggtagaataataaaacaattagctctattaat 15024407  T
Q  101 tctccatgcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagt------agtataaaagtttagataatagttctcatctatcctc 194  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||      |||||| |||| ||||||||||| | | |||||||||    
T  15024406 tctccattcatattggtaattgtgagtagggtcatgggttctaaggaaggacaaagtagtgagagtatataagtatagataatagtacccctctatcctc 15024307  T
Q  195 ttgatcccttgattcatactcaccccaaacttcttagcaataaaagtgatgat 247  Q
    |||||||||||||||| |||||||||||||||  |||||||||||||||||||    
T  15024306 ttgatcccttgattcacactcaccccaaactttctagcaataaaagtgatgat 15024254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 20562152 - 20562017
Alignment:
Q  1 gtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgat 100  Q
    |||||||||||||||| |||||| ||| | | ||||| |||||||||| ||||||||| || ||||||||||||||||||||  ||||||   || |||     
T  20562152 gtacctgtgggttagtgccaacacaaacctagttttctaccacctccgaattagtaatatctgaattaggtagaataatcaagaaattagtagtattgac 20562053  T
Q  101 tctccatgcatattggtaattgtgagtagggtcatg 136  Q
    ||||||  |||||||||||||||||| |||| ||||    
T  20562052 tctccactcatattggtaattgtgagaagggccatg 20562017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 20564460 - 20564325
Alignment:
Q  1 gtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgat 100  Q
    |||||||||||||||| |||||| ||| | | ||||| |||||||||| ||||||||| || ||||||||||||||||||||  ||||||   || |||     
T  20564460 gtacctgtgggttagtgccaacacaaacctagttttctaccacctccgaattagtaatatctgaattaggtagaataatcaagaaattagtagtattgac 20564361  T
Q  101 tctccatgcatattggtaattgtgagtagggtcatg 136  Q
    ||||||  |||||||||||||||||| |||| ||||    
T  20564360 tctccactcatattggtaattgtgagaagggccatg 20564325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 5 - 136
Target Start/End: Complemental strand, 20559840 - 20559709
Alignment:
Q  5 ctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgattctc 104  Q
    |||||||||||| |||||| ||| | | ||||| |||||||||| ||||||||| || ||||||||||||||||||||  ||||||   || ||| ||||    
T  20559840 ctgtgggttagtgccaacacaaacctagttttctaccacctccgaattagtaatatctgaattaggtagaataatcaagaaattagtagtattgactctc 20559741  T
Q  105 catgcatattggtaattgtgagtagggtcatg 136  Q
    ||  |||||||||||||||||| |||| ||||    
T  20559740 cactcatattggtaattgtgagaagggccatg 20559709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 13090218 - 13090351
Alignment:
Q  1 gtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgat 100  Q
    |||||||||||||||| ||||||||||   | ||||| ||||||| |||||||||||| || ||||||||||||||||||||  |||||||  || |||     
T  13090218 gtacctgtgggttagtgccaacataaa---agttttctaccaccttcggattagtaatatctgaattaggtagaataatcaagaaattagcattattgac 13090314  T
Q  101 tctccatgcatattggtaattgtgagtagggtcatgg 137  Q
    || |||  |||||||| ||||||||| |||| |||||    
T  13090315 tcaccactcatattgggaattgtgagaagggccatgg 13090351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 9362368 - 9362501
Alignment:
Q  1 gtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgat 100  Q
    |||||||||||||||| ||||||||||   | ||||| ||||||| |||||||||||| |  ||||||||||||||||||||  |||||||  || |||     
T  9362368 gtacctgtgggttagtgccaacataaa---agttttctaccaccttcggattagtaatatttgaattaggtagaataatcaagaaattagcattattgac 9362464  T
Q  101 tctccatgcatattggtaattgtgagtagggtcatgg 137  Q
    ||||||  ||||||||  |||||||| |||| |||||    
T  9362465 tctccactcatattggggattgtgagaagggccatgg 9362501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 13096513 - 13096380
Alignment:
Q  1 gtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgat 100  Q
    ||||||||||||||||  |||||||||   | ||||| ||||||| |||||||||||| || ||||||||||||||||||||  ||||||   || |||     
T  13096513 gtacctgtgggttagtgtcaacataaa---agttttctaccaccttcggattagtaatatctgaattaggtagaataatcaagaaattagaattattgac 13096417  T
Q  101 tctccatgcatattggtaattgtgagtagggtcatgg 137  Q
    ||||||  ||| |||| ||||||||| |||| |||||    
T  13096416 tctccactcatgttgggaattgtgagaagggccatgg 13096380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 3246924 - 3246968
Alignment:
Q  1 gtacctgtgggttagtaccaacataaagcaaattttccaccacct 45  Q
    |||||||||||||||||| || ||||| |||||||||||||||||    
T  3246924 gtacctgtgggttagtacaaaaataaaacaaattttccaccacct 3246968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 20153580 - 20153465
Alignment:
Q  1 gtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgat 100  Q
    |||||||| ||||||| ||||||||||  || ||||| ||||||||| |||||| ||| || |||   ||||||||||||||  |||||||   | |||     
T  20153580 gtacctgtaggttagtgccaacataaacaaagttttctaccacctccagattaggaatatctgaa---ggtagaataatcaagaaattagcagcattgac 20153484  T
Q  101 tctccatgcatattggtaa 119  Q
    ||||||  |||||||||||    
T  20153483 tctccactcatattggtaa 20153465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 540170 - 540416
Alignment:
Q  1 gtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  540170 gtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctttaatgat 540269  T
Q  101 tctccatgcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagtagtataaaagtttagataatagttctcatctatcctcttgatc 200  Q
    ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  540270 tctcctttcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagtagtataaaagtttagataatagttctcatctatcctcttgatc 540369  T
Q  201 ccttgattcatactcaccccaaacttcttagcaataaaagtgatgat 247  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||    
T  540370 ccttgattcacactcaccccaaacttcttagcaataaaagtgatgat 540416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 16327178 - 16327430
Alignment:
Q  1 gtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||    
T  16327178 gtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaatagtcaaacaattagctctaataat 16327277  T
Q  101 tctccatgcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagt------agtataaaagtttagataatagttctcatctatcctc 194  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||      |||||| ||||||||||||||||| || |||||||||    
T  16327278 tctccattcatattggtaattgtgagtagggtcatgggttataaggaaggacaaagtagtaagagtatataagtttagataatagttttcctctatcctc 16327377  T
Q  195 ttgatcccttgattcatactcaccccaaacttcttagcaataaaagtgatgat 247  Q
    |||||||||||||||| |||||||| |||| ||||||||||||||||||||||    
T  16327378 ttgatcccttgattcacactcaccctaaacctcttagcaataaaagtgatgat 16327430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 9581705 - 9581453
Alignment:
Q  1 gtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| ||    
T  9581705 gtacctgtgggttagtaccaacataaagcaaattttccaccacctccagattagtaatgtccgaattaggtagaataatcaaacaattagttctaataat 9581606  T
Q  101 tctccatgcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagt------agtataaaagtttagataatagttctcatctatcctc 194  Q
     |||||| ||||||| |||||||||||| ||||||||||| ||||||| ||||||||      |||||| |||||| ||||||| || ||||||||||||    
T  9581605 cctccattcatattgataattgtgagtatggtcatgggttctaaggaaagacaaagtagtgagagtatataagtttggataataattttcatctatcctc 9581506  T
Q  195 ttgatcccttgattcatactcaccccaaacttcttagcaataaaagtgatgat 247  Q
    |||||||||||||||| |||||||| |||| ||||||||||||||||||||||    
T  9581505 ttgatcccttgattcacactcaccctaaacctcttagcaataaaagtgatgat 9581453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 9729557 - 9729305
Alignment:
Q  1 gtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgat 100  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||    
T  9729557 gtacctgtggattagtaccaacataaagcaaattttccaccacctccggattagtaatgtctgaattaggtagaataatcaaacaattagttctaataat 9729458  T
Q  101 tctccatgcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagt------agtataaaagtttagataatagttctcatctatcctc 194  Q
     |||||| ||||||| |||||||||||| ||||||||||| ||||||| ||||||||      |||||| |||||| ||||||| || ||||||||||||    
T  9729457 cctccattcatattgataattgtgagtatggtcatgggttctaaggaaagacaaagtagtgagagtatataagtttggataataattttcatctatcctc 9729358  T
Q  195 ttgatcccttgattcatactcaccccaaacttcttagcaataaaagtgatgat 247  Q
    |||||||||||||||| |||||||| |||| ||||||||||||||||||||||    
T  9729357 ttgatcccttgattcacactcaccctaaacctcttagcaataaaagtgatgat 9729305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 4311530 - 4311279
Alignment:
Q  1 gtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgat 100  Q
    |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  4311530 gtacatgtgggttagtaccaacgtaaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaataat 4311431  T
Q  101 tctccatgcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagt------agtataaaagtttagataatagttctcatctatcctc 194  Q
    ||||||| ||||||||||||||||||||||| |||||||| |||| || ||||||||      |||||| |||| ||||||||||||| | |||||||||    
T  4311430 tctccattcatattggtaattgtgagtagggccatgggttctaagaaaggacaaagtagtgagagtatataagtctagataatagttcccctctatcctc 4311331  T
Q  195 ttgatcccttgattcatactcaccccaaacttcttagcaataaaagtgatgat 247  Q
    |||||| ||||||||| |||| ||||||||||| ||| |||||| ||||||||    
T  4311330 ttgatctcttgattcacactc-ccccaaacttcctagaaataaaggtgatgat 4311279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 8783500 - 8783752
Alignment:
Q  1 gtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgat 100  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||||| || |||| ||    
T  8783500 gtacatgtgggttagtaccaacataaagcaaattttccaccacctccggattagttatgtccgaattagggagaataatcaaaaaattatctgtaataat 8783599  T
Q  101 tctccatgcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagt------agtataaaagtttagataatagttctcatctatcctc 194  Q
    ||||| | |||||| |||||||||||||||| |||||||| ||||||| | ||||||      |||||| |||| ||||||||||||| | ||||||| |    
T  8783600 tctcctttcatatttgtaattgtgagtagggccatgggttgtaaggaagggcaaagtagtgagagtatataagtctagataatagttcccctctatcccc 8783699  T
Q  195 ttgatcccttgattcatactcaccccaaacttcttagcaataaaagtgatgat 247  Q
    ||||||| |||||||| |||||||||||||||| |||||||||| ||||||||    
T  8783700 ttgatccattgattcacactcaccccaaacttcctagcaataaaggtgatgat 8783752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 84 - 247
Target Start/End: Original strand, 14223144 - 14223313
Alignment:
Q  84 caattagctctaatgattctccatgcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagtagt------ataaaagtttagataat 177  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||      ||| |||||||||||||    
T  14223144 caattagctctaatgattctccattcatattggtaattgtgagtagggtcatgggctttaaggaatgacaaagtagtgagagtatataagtttagataat 14223243  T
Q  178 agttctcatctatcctcttgatcccttgattcatactcaccccaaacttcttagcaataaaagtgatgat 247  Q
    ||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  14223244 agttctcctctttcctcttgatcccttgattcacactcaccccaaacttcttagcaataaaagtgatgat 14223313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 23513872 - 23513736
Alignment:
Q  1 gtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgat 100  Q
    |||||||||||||||| ||||||||||  || ||||| ||||||||||||||||||||||||||||||||||||||||||||  |||||||  || |||     
T  23513872 gtacctgtgggttagtgccaacataaacaaagttttctaccacctccggattagtaatgtccgaattaggtagaataatcaagtaattagcattattgac 23513773  T
Q  101 tctccatgcatattggtaattgtgagtagggtcatgg 137  Q
    ||||||  ||||| |||||||||||| |||| |||||    
T  23513772 tctccactcatataggtaattgtgagaagggccatgg 23513736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 4462118 - 4462244
Alignment:
Q  1 gtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgat 100  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||| ||| ||||| |||  || ||||||||||||||||||||||| ||||||||||||    
T  4462118 gtaccagtgggttagtaccaatataaagcaaattttccaccaccttcgggttagttatgaacggattaggtagaataatcaaacaatgagctctaatgat 4462217  T
Q  101 tctccatgcatattggtaattgtgagt 127  Q
    | || |  ||||||||| |||||||||    
T  4462218 tttctaatcatattggtcattgtgagt 4462244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 13741224 - 13741088
Alignment:
Q  1 gtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgat 100  Q
    |||||||||| ||||| ||||||||||   | ||||| |||||||||| ||||||||||||||||||||||||||||||||| |||||| |  || |||     
T  13741224 gtacctgtggattagtgccaacataaacatagttttctaccacctccgaattagtaatgtccgaattaggtagaataatcaagcaattatcattattgac 13741125  T
Q  101 tctccatgcatattggtaattgtgagtagggtcatgg 137  Q
    ||||||  |||||||||||||||||| |||| |||||    
T  13741124 tctccactcatattggtaattgtgagaagggccatgg 13741088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 5395943 - 5395811
Alignment:
Q  1 gtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgat 100  Q
    |||||||||||||||| |||||||||| ||| ||||| |||||||||||||||||||| || ||||||||||||||||||||  |||||||  || |||     
T  5395943 gtacctgtgggttagtgccaacataaaccaagttttctaccacctccggattagtaatatctgaattaggtagaataatcaagaaattagcattattgac 5395844  T
Q  101 tctccatgcatattggtaattgtgagtagggtc 133  Q
     |||||  ||| ||||||||||| || ||||||    
T  5395843 gctccactcattttggtaattgttagaagggtc 5395811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 12565806 - 12565670
Alignment:
Q  1 gtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgat 100  Q
    ||||| ||||||||||||||||||||| ||| ||||| |||||||||| ||||||||| || |||||||||  |||||||||  |||||||  || |||     
T  12565806 gtaccggtgggttagtaccaacataaaccaagttttctaccacctccgaattagtaatatctgaattaggttaaataatcaagaaattagcattattgac 12565707  T
Q  101 tctccatgcatattggtaattgtgagtagggtcatgg 137  Q
    ||||||  ||||||||||||||| || |||| |||||    
T  12565706 tctccactcatattggtaattgttagaagggccatgg 12565670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 10439749 - 10439888
Alignment:
Q  1 gtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgat 100  Q
    |||||||||||||||| |||||||||| ||| ||||| ||||||| | | |||||||| || ||||||||||||||||||||  ||||| |  || |||     
T  10439749 gtacctgtgggttagtgccaacataaaccaagttttctaccaccttcagcttagtaatatctgaattaggtagaataatcaagaaattatcattattgac 10439848  T
Q  101 tctccatgcatattggtaattgtgagtagggtcatgggtt 140  Q
    ||||||  |||||||||||||||||| ||||  |||||||    
T  10439849 tctccactcatattggtaattgtgagaagggctatgggtt 10439888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 29564 - 29312
Alignment:
Q  1 gtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgat 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  29564 gtacctgtgggttagtaccaacataaagcaaattttctaccacctccggattagtaatgtccgaattaggtagaataatcatacaattagctctaatgat 29465  T
Q  101 tctccatgcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagt------agtataaaagtttagataatagttctcatctatcctc 194  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||    
T  29464 tctccattcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagtagtgagagtataaaagtttagataatagttctcatctatcctc 29365  T
Q  195 ttgatcccttgattcatactcaccccaaacttcttagcaataaaagtgatgat 247  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29364 ttgatcccttgattcatactcaccccaaacttcttagcaataaaagtgatgat 29312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 20001101 - 20000852
Alignment:
Q  1 gtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20001101 gtacctgtgggttagtaccaacataaagcaaattttccaccacctccagattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgat 20001002  T
Q  101 tctccatgcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagt------agtataaaagtttagataatagttctcatctatcctc 194  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||    
T  20001001 tctccattcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagtagtgagagtataaaagtttagataatagttctcatctatcctc 20000902  T
Q  195 ttgatcccttgattcatactcaccccaaacttcttagcaataaaagtgatgat 247  Q
    |||||||||||||||| ||||||||||||   |||||||||||||||||||||    
T  20000901 ttgatcccttgattcacactcaccccaaa---cttagcaataaaagtgatgat 20000852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 20040480 - 20040615
Alignment:
Q  1 gtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgat 100  Q
    |||||||||||||||| |||||||||| | | ||||| |||||||| ||||||||||| || ||||||||||||||||||||  ||||||   || |||     
T  20040480 gtacctgtgggttagtgccaacataaacctagttttctaccacctctggattagtaatatctgaattaggtagaataatcaagaaattagtagtattgac 20040579  T
Q  101 tctccatgcatattggtaattgtgagtagggtcatg 136  Q
    ||||||  |||||||||||||||||| |||| ||||    
T  20040580 tctccactcatattggtaattgtgagaagggccatg 20040615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 21855187 - 21855323
Alignment:
Q  1 gtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgat 100  Q
    |||||||| ||||||| ||||||||||   | ||||| ||||||| |||||||||||| || ||||||||||||||||||||  |||||||  || |||     
T  21855187 gtacctgtaggttagtgccaacataaa---agttttctaccaccttcggattagtaatatctgaattaggtagaataatcaagaaattagcattattgac 21855283  T
Q  101 tctccatgcatattggtaattgtgagtagggtcatgggtt 140  Q
    ||||||  |||||||||||||||||| ||||| |||||||    
T  21855284 tctccactcatattggtaattgtgagaagggttatgggtt 21855323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 17619544 - 17619412
Alignment:
Q  1 gtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgat 100  Q
    |||||||||||||||| ||||||||||   | ||||| ||||||| |||||||||||| || ||||||||||||||||||||  |||||||  || |||     
T  17619544 gtacctgtgggttagtgccaacataaa---agttttctaccaccttcggattagtaatatctgaattaggtagaataatcaagaaattagcattattgac 17619448  T
Q  101 tctccatgcatattggtaattgtgagtagggtcatg 136  Q
    ||||||  |||||||| ||||||||| |||| ||||    
T  17619447 tctccactcatattggaaattgtgagaagggccatg 17619412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 51964 - 52216
Alignment:
Q  1 gtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||    
T  51964 gtacctgtgggttagtaccaacataaagcaaattttccaccacctccggaatagtaatgtccgaattaggtagaatagtcaaacaattagctctaataat 52063  T
Q  101 tctccatgcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagt------agtataaaagtttagataatagttctcatctatcctc 194  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||      |||||| ||||||||||||||||| || |||||||||    
T  52064 tctccattcatattggtaattgtgagtagggtcatgggttataaggaaggacaaagtagtaagagtatataagtttagataatagttttcctctatcctc 52163  T
Q  195 ttgatcccttgattcatactcaccccaaacttcttagcaataaaagtgatgat 247  Q
    |||||||||||||||| |||||||| |||| ||||||||||||||||||||||    
T  52164 ttgatcccttgattcacactcaccctaaacctcttagcaataaaagtgatgat 52216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 162; Significance: 1e-86; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 23712118 - 23712370
Alignment:
Q  1 gtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgat 100  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| ||    
T  23712118 gtacctgtgggttaggaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaaaaattagttctaataat 23712217  T
Q  101 tctccatgcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagt------agtataaaagtttagataatagttctcatctatcctc 194  Q
     |||||| |||||||||||||||||||| ||||||||||| ||||||| ||||||||      |||||| |||||| ||||||| || ||||||||||||    
T  23712218 cctccattcatattggtaattgtgagtatggtcatgggttctaaggaaagacaaagtagtgagagtatataagtttggataataattttcatctatcctc 23712317  T
Q  195 ttgatcccttgattcatactcaccccaaacttcttagcaataaaagtgatgat 247  Q
    |||||||||||||||| |||||||| |||| ||||||||| ||||||||||||    
T  23712318 ttgatcccttgattcacactcaccctaaacctcttagcaacaaaagtgatgat 23712370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 20446256 - 20446386
Alignment:
Q  1 gtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgat 100  Q
    |||||||||||||||| |||||||||| ||| ||||| ||||||| |||||||||||| || ||||||||||||||||||||  |||||||  || |||     
T  20446256 gtacctgtgggttagtgccaacataaaccaagttttctaccaccttcggattagtaatatctgaattaggtagaataatcaagaaattagcattattgac 20446355  T
Q  101 tctccatgcatattggtaattgtgagtaggg 131  Q
    ||||||  |||||||||||||||||| ||||    
T  20446356 tctccactcatattggtaattgtgagaaggg 20446386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 21282321 - 21282458
Alignment:
Q  1 gtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaa-ttagctctaatga 99  Q
    |||||||||||||||| |||||||||| ||| ||||| |||||||||||||||||||| | |||||| |||||||||||||| ||| |||||  || |||    
T  21282321 gtacctgtgggttagtgccaacataaaccaagttttctaccacctccggattagtaatattcgaatttggtagaataatcaagcaatttagcgttattga 21282420  T
Q  100 ttctccatgcatattggtaattgtgagtagggtcatgg 137  Q
     ||||||  |||||||||||||||||| ||||| ||||    
T  21282421 ctctccactcatattggtaattgtgagaagggttatgg 21282458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 18487474 - 18487596
Alignment:
Q  1 gtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgat 100  Q
    |||||||||||||||| |||||||||| ||| ||||| |||||||| |||||| |||| || ||||||||||||||||||||  |||||||  || |||     
T  18487474 gtacctgtgggttagtgccaacataaaccaagttttctaccacctcaggattaataatatctgaattaggtagaataatcaagaaattagcattattgac 18487573  T
Q  101 tctccatgcatattggtaattgt 123  Q
    ||||||  |||||||||||||||    
T  18487574 tctccactcatattggtaattgt 18487596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 23602051 - 23602173
Alignment:
Q  1 gtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgat 100  Q
    |||||||||||||||| ||||||||||   | ||||| ||||||| |||||||||||| || ||||||||||||||||||||  |||||||  || |||     
T  23602051 gtacctgtgggttagtgccaacataaa---agttttctaccaccttcggattagtaatatctgaattaggtagaataatcaagaaattagcattattgac 23602147  T
Q  101 tctccatgcatattggtaattgtgag 126  Q
    || |||  |||||||| |||||||||    
T  23602148 tcgccactcatattgggaattgtgag 23602173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 24939333 - 24939200
Alignment:
Q  1 gtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgat 100  Q
    |||||||||||||||| ||||||||||   | ||||| ||||||| || ||||||||| || ||||||||||||||||||||  |||||||  || |||     
T  24939333 gtacctgtgggttagtgccaacataaa---agttttctaccaccttcgaattagtaatatctgaattaggtagaataatcaagaaattagcattattgac 24939237  T
Q  101 tctccatgcatattggtaattgtgagtagggtcatgg 137  Q
    || |||  |||||||| ||||||||| |||| |||||    
T  24939236 tcgccactcatattgggaattgtgagaagggccatgg 24939200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 24218632 - 24218516
Alignment:
Q  1 gtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgat 100  Q
    |||| ||||||||||| |||||||||    | ||||| |||| ||||||||||||||| || ||||||||||||||||||||  |||||||  || |||     
T  24218632 gtacatgtgggttagtgccaacataat---agttttctaccatctccggattagtaatatctgaattaggtagaataatcaagaaattagcattattgac 24218536  T
Q  101 tctccatgcatattggtaat 120  Q
    ||||||  ||||||||||||    
T  24218535 tctccactcatattggtaat 24218516  T

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Target: scaffold0485 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: scaffold0485
Description:

Target: scaffold0485; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 11315 - 11568
Alignment:
Q  1 gtacctgtgggttagtaccaacataaagcaaatttt-ccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatga 99  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||| |    
T  11315 gtacctgtgggttagtaccaacataaagcaaatttttccaccacctccagattagttatgtccggattaggtagaataatcaaacaattagctctaataa 11414  T
Q  100 ttctccatgcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagtag------tataaaagtttagataatagttctcatctatcct 193  Q
    |||||||  |||||||||||||||||||| ||||||||||| ||||||| ||||||||||      |||| |||| ||||||||||||| | ||||||||    
T  11415 ttctccactcatattggtaattgtgagtatggtcatgggttctaaggaaggacaaagtagtgagattatataagtctagataatagttcccctctatcct 11514  T
Q  194 cttgatcccttgattcatactcaccccaaacttcttagcaataaaagtgatgat 247  Q
    ||||||||||||||||| |||||||||||||||  |||||||||| ||||||||    
T  11515 cttgatcccttgattcacactcaccccaaactttctagcaataaaggtgatgat 11568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 24501133 - 24500997
Alignment:
Q  1 gtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgat 100  Q
    |||||||||||||||| |||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||  || |||     
T  24501133 gtacctgtgggttagtgccaacataaatcaagttttctaccacctccggattagtaatgtccgaattaggtagaataatcaagcaattagcattattgac 24501034  T
Q  101 tctccatgcatattggtaattgtgagtagggtcatgg 137  Q
    ||||||   ||||||||||||||||| |||| |||||    
T  24501033 tctccactaatattggtaattgtgagaagggccatgg 24500997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 25339517 - 25339661
Alignment:
Q  1 gtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgat 100  Q
    |||| |||| |||||| ||||||||||| |||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||| ||| |||     
T  25339517 gtacatgtgagttagtgccaacataaagaaaattttccaccacctccagattagttatgtccggattaggtagaataatcaaacaattagccctattgac 25339616  T
Q  101 tctccatgcatattggtaattgtgagtagggtcatgggttttaag 145  Q
      ||||  ||||||||||||||||||| ||| |||| ||| ||||    
T  25339617 cttccactcatattggtaattgtgagttgggccatgagttctaag 25339661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 137
Target Start/End: Original strand, 11741 - 11860
Alignment:
Q  18 ccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgattctccatgcatattggt 117  Q
    |||||||||| ||| ||||| ||||||||| |||||||||| ||||||||||||||||||||||| ||||||||  || ||| ||||||  |||||||||    
T  11741 ccaacataaaccaagttttctaccacctccagattagtaatatccgaattaggtagaataatcaagcaattagcattattgactctccactcatattggt 11840  T
Q  118 aattgtgagtagggtcatgg 137  Q
    ||||||||| ||||||||||    
T  11841 aattgtgagaagggtcatgg 11860  T

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Target: scaffold0222 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: scaffold0222
Description:

Target: scaffold0222; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 18631 - 18509
Alignment:
Q  1 gtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgat 100  Q
    |||||||||||||||| |||||||||| ||| ||||| |||||||||||||||||||| || ||||||||||||||||||||  |||||||  || |||     
T  18631 gtacctgtgggttagtgccaacataaaccaagttttctaccacctccggattagtaatatctgaattaggtagaataatcaagaaattagcattattgac 18532  T
Q  101 tctccatgcatattggtaattgt 123  Q
    ||||||  |||||||||||||||    
T  18531 tctccactcatattggtaattgt 18509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0566 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0566
Description:

Target: scaffold0566; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 1410 - 1275
Alignment:
Q  1 gtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgat 100  Q
    |||||||||||||||| |||||||||| ||| ||||| ||||||||| |||||||||| || ||||||||||||||||||||  |||||||   | |||     
T  1410 gtacctgtgggttagtgccaacataaaccaagttttctaccacctccagattagtaatatctgaattaggtagaataatcaagaaattagcataattgac 1311  T
Q  101 tctccatgcatattggtaattgtgagtagggtcatg 136  Q
    ||||||  ||||||||||||||| || |||||||||    
T  1310 tctccactcatattggtaattgttagaagggtcatg 1275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 33 - 137
Target Start/End: Complemental strand, 17138 - 17034
Alignment:
Q  33 ttttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgattctccatgcatattggtaattgtgagtagggt 132  Q
    ||||| |||||||| | ||||||||| ||||||||||||||||||||||| ||||||||  || ||| ||||||  |||||||||||||||||| |||||    
T  17138 ttttctaccacctctgtattagtaatatccgaattaggtagaataatcaagcaattagcattattgactctccactcatattggtaattgtgagaagggt 17039  T
Q  133 catgg 137  Q
    |||||    
T  17038 catgg 17034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 38044 - 38177
Alignment:
Q  1 gtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgat 100  Q
    |||||||||||||||| ||||||||||   | ||||| |||||||  | ||||||||| || ||||||||||||||||||||  |||||||  || |||     
T  38044 gtacctgtgggttagtgccaacataaa---agttttctaccaccttagaattagtaatatctgaattaggtagaataatcaagaaattagcattattgac 38140  T
Q  101 tctccatgcatattggtaattgtgagtagggtcatgg 137  Q
    || |||  |||||||| ||||||||| |||| |||||    
T  38141 tcgccactcatattggaaattgtgagaagggccatgg 38177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1184 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold1184
Description:

Target: scaffold1184; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 41
Target Start/End: Original strand, 537 - 571
Alignment:
Q  7 gtgggttagtaccaacataaagcaaattttccacc 41  Q
    |||||||||||||||||||||||||||||||||||    
T  537 gtgggttagtaccaacataaagcaaattttccacc 571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 12855 - 12930
Alignment:
Q  1 gtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataat 79  Q
    |||||||||||||||| |||||||||   || ||||| ||||||||| |||||||||| ||  | ||||||||||||||    
T  12855 gtacctgtgggttagtgccaacataa---aagttttctaccacctccagattagtaatatctaatttaggtagaataat 12930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 8746 - 8821
Alignment:
Q  1 gtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataat 79  Q
    |||| ||||||||||| ||||||||||   | ||||| ||||||||| |||||||||| ||  | ||||||||||||||    
T  8746 gtacatgtgggttagtgccaacataaa---agttttctaccacctccagattagtaatatctaatttaggtagaataat 8821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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