View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4290_low_16 (Length: 204)
Name: NF4290_low_16
Description: NF4290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4290_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 169; Significance: 8e-91; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 13 - 185
Target Start/End: Complemental strand, 8057441 - 8057269
Alignment:
| Q |
13 |
gagaagaaagaacgataaccaccgaagaacttggagatgatcttctgaataggaatacaaagcaaggaaggccaggtggaggtgcaagtgttccaccata |
112 |
Q |
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| T |
8057441 |
gagaagaaagaacgataaccactgaagaacttggagatgatcttctgaataggaatacaaagcaaggaaggccaggtggaggtgcaagtgttccaccata |
8057342 |
T |
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| Q |
113 |
gatcctcgttgtcgttgcagatcatgtggcggaattcagaagacactgaggataacatgatcaaggtttcacc |
185 |
Q |
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| T |
8057341 |
gatcctcgttgtcgttgcagatcatgtggcggaattcagaagacactgaggataacatgatcaaggtttcacc |
8057269 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 73 - 164
Target Start/End: Complemental strand, 27246418 - 27246330
Alignment:
| Q |
73 |
agcaaggaaggccaggtggaggtgcaagtgttccaccatagatcctcgttgtcgttgcagatcatgtggcggaattcagaagacactgagga |
164 |
Q |
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| T |
27246418 |
agcaaagaaggccatgttgaggtgcatatgttccgccataaatctt---tgtcgttgcagatcatgtggcggagttctgaagatacggagga |
27246330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 73 - 180
Target Start/End: Complemental strand, 27253198 - 27253094
Alignment:
| Q |
73 |
agcaaggaaggccaggtggaggtgcaagtgttccaccatagatcctcgttgtcgttgcagatcatgtggcggaattcagaagacactgaggataacatga |
172 |
Q |
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| T |
27253198 |
agcaaagaaggccatgttgaagtgcatatgttccgccatagatcttcgttgt---tgcagatcatgtggcggagttctgaagatacacaggataatatgg |
27253102 |
T |
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| Q |
173 |
tcaaggtt |
180 |
Q |
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| T |
27253101 |
ttaaggtt |
27253094 |
T |
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