View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4290_low_5 (Length: 370)

Name: NF4290_low_5
Description: NF4290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4290_low_5
NF4290_low_5
[»] chr4 (39 HSPs)
chr4 (19-255)||(55385402-55385625)
chr4 (258-362)||(17619146-17619250)
chr4 (253-362)||(32728354-32728463)
chr4 (258-362)||(711962-712066)
chr4 (262-362)||(48435573-48435673)
chr4 (258-362)||(55272370-55272474)
chr4 (253-355)||(27893843-27893945)
chr4 (253-361)||(3756242-3756349)
chr4 (258-350)||(27864566-27864658)
chr4 (258-362)||(46827700-46827804)
chr4 (258-355)||(28988475-28988572)
chr4 (258-362)||(960864-960968)
chr4 (255-362)||(35037004-35037111)
chr4 (256-362)||(38851513-38851619)
chr4 (252-350)||(48463456-48463554)
chr4 (252-355)||(31680898-31681001)
chr4 (258-344)||(1771278-1771364)
chr4 (258-344)||(55966358-55966444)
chr4 (289-362)||(19879987-19880060)
chr4 (299-362)||(36004110-36004173)
chr4 (258-355)||(25051695-25051792)
chr4 (258-355)||(27550311-27550408)
chr4 (258-355)||(33703143-33703240)
chr4 (255-344)||(43514698-43514787)
chr4 (256-355)||(43949802-43949902)
chr4 (256-355)||(41327544-41327643)
chr4 (258-343)||(28982835-28982920)
chr4 (258-355)||(35017735-35017831)
chr4 (258-355)||(41847973-41848070)
chr4 (258-355)||(41878408-41878505)
chr4 (258-355)||(45490314-45490411)
chr4 (256-355)||(39631100-39631200)
chr4 (258-355)||(12496958-12497055)
chr4 (258-355)||(23035982-23036079)
chr4 (258-355)||(27316714-27316811)
chr4 (259-355)||(23204779-23204875)
chr4 (253-336)||(49229684-49229767)
chr4 (258-307)||(30189275-30189324)
chr4 (258-295)||(36004165-36004202)
[»] chr8 (27 HSPs)
chr8 (258-362)||(35181518-35181622)
chr8 (258-362)||(34304790-34304894)
chr8 (255-362)||(33629987-33630094)
chr8 (253-362)||(18066712-18066821)
chr8 (254-355)||(29800951-29801052)
chr8 (253-355)||(42197436-42197538)
chr8 (258-362)||(16603620-16603724)
chr8 (255-355)||(42295194-42295294)
chr8 (258-355)||(11582768-11582865)
chr8 (258-355)||(29705364-29705461)
chr8 (258-355)||(36743484-36743581)
chr8 (254-350)||(20148758-20148854)
chr8 (299-362)||(10678146-10678209)
chr8 (256-355)||(26125635-26125734)
chr8 (258-355)||(1375544-1375641)
chr8 (258-355)||(2165964-2166061)
chr8 (258-355)||(5754905-5755002)
chr8 (258-362)||(16358827-16358932)
chr8 (256-343)||(30912575-30912662)
chr8 (255-350)||(42699256-42699351)
chr8 (258-355)||(30660743-30660840)
chr8 (265-355)||(40528635-40528726)
chr8 (249-355)||(2546989-2547095)
chr8 (258-344)||(45397318-45397404)
chr8 (264-355)||(31384672-31384763)
chr8 (258-362)||(19386559-19386668)
chr8 (258-295)||(10678201-10678238)
[»] chr6 (18 HSPs)
chr6 (258-362)||(33242405-33242509)
chr6 (256-362)||(27441542-27441648)
chr6 (258-356)||(33253915-33254013)
chr6 (256-350)||(24203993-24204087)
chr6 (258-355)||(13743222-13743319)
chr6 (258-355)||(13748722-13748819)
chr6 (258-355)||(3213402-3213499)
chr6 (258-355)||(7292749-7292846)
chr6 (258-355)||(9698334-9698431)
chr6 (258-355)||(21279931-21280028)
chr6 (258-355)||(26670010-26670107)
chr6 (258-350)||(7367551-7367643)
chr6 (258-355)||(26466801-26466898)
chr6 (258-355)||(30014345-30014442)
chr6 (255-355)||(30735981-30736081)
chr6 (258-362)||(31109216-31109320)
chr6 (258-355)||(7273336-7273433)
chr6 (258-355)||(21293678-21293775)
[»] chr2 (30 HSPs)
chr2 (258-362)||(43114559-43114663)
chr2 (256-362)||(11825648-11825754)
chr2 (256-362)||(41281968-41282074)
chr2 (258-362)||(966828-966932)
chr2 (258-362)||(12415454-12415558)
chr2 (258-362)||(12427514-12427618)
chr2 (258-362)||(16803970-16804074)
chr2 (258-362)||(16843252-16843356)
chr2 (258-362)||(18491707-18491811)
chr2 (262-362)||(34895735-34895835)
chr2 (256-362)||(4299414-4299520)
chr2 (253-341)||(6518484-6518571)
chr2 (258-355)||(1750416-1750513)
chr2 (258-355)||(34817777-34817874)
chr2 (258-355)||(4764727-4764824)
chr2 (258-355)||(12302254-12302351)
chr2 (258-355)||(16096749-16096846)
chr2 (258-355)||(19047159-19047256)
chr2 (254-355)||(43490402-43490503)
chr2 (278-362)||(12531657-12531740)
chr2 (280-362)||(4451944-4452026)
chr2 (258-355)||(13780736-13780833)
chr2 (253-362)||(14285673-14285782)
chr2 (258-355)||(30838634-30838731)
chr2 (258-355)||(43335764-43335861)
chr2 (256-344)||(7070416-7070504)
chr2 (254-352)||(8896587-8896685)
chr2 (255-335)||(33229300-33229381)
chr2 (258-352)||(42026769-42026865)
chr2 (299-350)||(42849864-42849915)
[»] chr1 (24 HSPs)
chr1 (258-362)||(44112679-44112783)
chr1 (258-362)||(48119630-48119734)
chr1 (258-362)||(35003296-35003400)
chr1 (258-362)||(45427739-45427843)
chr1 (252-362)||(38113189-38113299)
chr1 (253-362)||(41065150-41065259)
chr1 (258-362)||(38335920-38336024)
chr1 (258-362)||(35000107-35000211)
chr1 (258-362)||(46168385-46168489)
chr1 (253-362)||(45705822-45705931)
chr1 (258-362)||(45639726-45639830)
chr1 (258-355)||(43571087-43571184)
chr1 (253-350)||(2497568-2497665)
chr1 (258-355)||(5489778-5489875)
chr1 (258-355)||(37814780-37814877)
chr1 (258-355)||(48498963-48499060)
chr1 (258-362)||(26585464-26585568)
chr1 (254-355)||(4401325-4401427)
chr1 (258-355)||(23989524-23989622)
chr1 (258-355)||(750306-750403)
chr1 (258-355)||(24769500-24769597)
chr1 (256-355)||(7447826-7447924)
chr1 (258-313)||(14427349-14427404)
chr1 (258-344)||(50448272-50448358)
[»] scaffold0100 (1 HSPs)
scaffold0100 (258-362)||(35450-35554)
[»] chr3 (25 HSPs)
chr3 (258-362)||(9434126-9434230)
chr3 (258-362)||(4190259-4190363)
chr3 (258-362)||(10457886-10457990)
chr3 (253-362)||(25996265-25996374)
chr3 (258-355)||(40808867-40808964)
chr3 (258-362)||(34791831-34791935)
chr3 (258-362)||(51757595-51757699)
chr3 (258-350)||(45126934-45127026)
chr3 (258-361)||(52627972-52628075)
chr3 (258-344)||(42100690-42100776)
chr3 (258-355)||(46941055-46941152)
chr3 (258-355)||(54237098-54237195)
chr3 (256-355)||(27748563-27748662)
chr3 (258-356)||(53273684-53273782)
chr3 (258-355)||(24688403-24688500)
chr3 (258-355)||(25413683-25413780)
chr3 (258-355)||(36150132-36150229)
chr3 (258-355)||(40480751-40480848)
chr3 (258-355)||(42394420-42394517)
chr3 (254-355)||(53581859-53581960)
chr3 (258-355)||(54246149-54246246)
chr3 (258-355)||(47191027-47191123)
chr3 (298-360)||(19148821-19148883)
chr3 (260-341)||(29558249-29558330)
chr3 (299-355)||(51249351-51249407)
[»] scaffold0003 (1 HSPs)
scaffold0003 (256-362)||(45713-45819)
[»] chr7 (27 HSPs)
chr7 (258-362)||(40236921-40237025)
chr7 (258-362)||(33384872-33384977)
chr7 (258-362)||(31513289-31513393)
chr7 (258-362)||(31408627-31408731)
chr7 (258-362)||(27535225-27535329)
chr7 (254-355)||(4638200-4638301)
chr7 (256-355)||(10573749-10573848)
chr7 (258-355)||(24001013-24001110)
chr7 (258-355)||(42538432-42538529)
chr7 (255-355)||(43343625-43343725)
chr7 (254-350)||(44326176-44326272)
chr7 (256-355)||(44416935-44417034)
chr7 (253-355)||(5194232-5194334)
chr7 (253-355)||(35069718-35069820)
chr7 (259-350)||(26898408-26898499)
chr7 (265-355)||(32029818-32029908)
chr7 (258-355)||(5015397-5015494)
chr7 (258-355)||(5810925-5811022)
chr7 (254-355)||(16180358-16180458)
chr7 (258-355)||(43317445-43317542)
chr7 (258-344)||(42972854-42972940)
chr7 (262-355)||(45326026-45326119)
chr7 (258-317)||(39998410-39998469)
chr7 (258-355)||(24280597-24280694)
chr7 (258-355)||(41861676-41861775)
chr7 (286-355)||(38160580-38160649)
chr7 (258-344)||(9216304-9216389)
[»] chr5 (14 HSPs)
chr5 (258-362)||(17208076-17208180)
chr5 (258-362)||(32473388-32473492)
chr5 (255-355)||(5256994-5257094)
chr5 (258-355)||(7617135-7617232)
chr5 (258-362)||(30622713-30622816)
chr5 (258-355)||(2614650-2614747)
chr5 (258-355)||(22512307-22512404)
chr5 (258-355)||(41334664-41334761)
chr5 (258-355)||(18033984-18034081)
chr5 (258-328)||(33855071-33855141)
chr5 (258-355)||(33801471-33801568)
chr5 (258-355)||(38470581-38470678)
chr5 (256-314)||(25915029-25915087)
chr5 (264-355)||(39122434-39122524)
[»] scaffold0385 (1 HSPs)
scaffold0385 (258-355)||(11253-11350)
[»] scaffold0119 (1 HSPs)
scaffold0119 (258-355)||(687-784)
[»] scaffold0038 (1 HSPs)
scaffold0038 (258-355)||(112657-112754)
[»] scaffold0187 (2 HSPs)
scaffold0187 (258-355)||(14189-14286)
scaffold0187 (258-355)||(24517-24614)
[»] scaffold0157 (1 HSPs)
scaffold0157 (258-355)||(23422-23519)


Alignment Details
Target: chr4 (Bit Score: 146; Significance: 8e-77; HSPs: 39)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 19 - 255
Target Start/End: Original strand, 55385402 - 55385625
Alignment:
Q  19 caaatgtatgtaaatcaacatgattttnnnnnnntggagtgacctacgtacatttcactcgtaagaaagagtgtttaaaatagagtgttggaatgatggt 118  Q
    |||||||||||||||||||||||||||       ||||||||||||| |||||||||||||||||||||||              |||||||||||| ||    
T  55385402 caaatgtatgtaaatcaacatgattttaaaaaaatggagtgacctacatacatttcactcgtaagaaagag--------------tgttggaatgatcgt 55385487  T
Q  119 tattaacattactcaaaaagagattgttacagctaacaaaactatagatattgcataaataaaacatcaaatttcatgacaggccccact-catgaagat 217  Q
    |||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  55385488 tattaacattactcaaaatgagattgttacagctaacaaaactgtagatattgcataaataaaacatcaaatttcatgacaggccccactccatgaagat 55385587  T
Q  218 attgcctctcgttctctatcactaagctgttaagatta 255  Q
    ||||||||||||||||||||||||||||||||||||||    
T  55385588 attgcctctcgttctctatcactaagctgttaagatta 55385625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 258 - 362
Target Start/End: Complemental strand, 17619250 - 17619146
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctttc 357  Q
    ||||||||||||||||||| ||||||||||||||| |||| |||||||||| |||| |||  ||||||||||||||||||||||||||||||||||||||    
T  17619250 aaaatgttacatgaacaccttttaatcatacaccctattgtacaccccatgcattaaggatattttggtaaattcatctcacaaccatactttctctttc 17619151  T
Q  358 atctc 362  Q
    |||||    
T  17619150 atctc 17619146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 253 - 362
Target Start/End: Original strand, 32728354 - 32728463
Alignment:
Q  253 ttagaaaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttct 352  Q
    |||| ||||||||||||||||| | ||||||||||||||| |||| |||||||||| |||| |||| |||| ||||||||||||||||| ||||||||||    
T  32728354 ttaggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacattttagtaaattcatctcacaatcatactttct 32728453  T
Q  353 ctttcatctc 362  Q
    ||||||||||    
T  32728454 ctttcatctc 32728463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 258 - 362
Target Start/End: Original strand, 711962 - 712066
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctttc 357  Q
    ||||||||||||||||||| ||||||||||||||| |||| |||||| ||| |||| |||  |||||||||||||||||||||| |||||||||||||||    
T  711962 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccctatgcattaaggatattttggtaaattcatctcacaaacatactttctctttc 712061  T
Q  358 atctc 362  Q
    |||||    
T  712062 atctc 712066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 262 - 362
Target Start/End: Complemental strand, 48435673 - 48435573
Alignment:
Q  262 tgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctttcatct 361  Q
    |||||||||||||||||||||||| |||||| |||| |||||||||| ||||||||| | |||||||||||||||||||| |||||||| ||||||||||    
T  48435673 tgttacatgaacaccatttaatcacacaccctattgtacaccccatgcattagggacatattggtaaattcatctcacaatcatactttatctttcatct 48435574  T
Q  362 c 362  Q
    |    
T  48435573 c 48435573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 258 - 362
Target Start/End: Complemental strand, 55272474 - 55272370
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctttc 357  Q
    ||||||||||||||||| | ||||||||||||| | |||| |||||||||| |||| |||  ||||||||||||||||||||||||||||||||||||||    
T  55272474 aaaatgttacatgaacatcctttaatcatacactctattgtacaccccatgcattaaggatattttggtaaattcatctcacaaccatactttctctttc 55272375  T
Q  358 atctc 362  Q
    |||||    
T  55272374 atctc 55272370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 253 - 355
Target Start/End: Complemental strand, 27893945 - 27893843
Alignment:
Q  253 ttagaaaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttct 352  Q
    ||||||||||||||||| ||||||||||| ||||||| ||||||| |||||||||||||||||||  ||||||||| ||||||||||||||| ||||| |    
T  27893945 ttagaaaaatgttacataaacaccatttattcatacatcccattgtacaccccatgtattagggatattttggtaatttcatctcacaaccacactttat 27893846  T
Q  353 ctt 355  Q
    |||    
T  27893845 ctt 27893843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 253 - 361
Target Start/End: Complemental strand, 3756349 - 3756242
Alignment:
Q  253 ttagaaaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttct 352  Q
    |||||||||||||||||||||||| ||||||||||||||| |||| |||||||||| |||| |||  |||| ||||||| ||||||||| |||||||| |    
T  3756349 ttagaaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattaaggatattttagtaaatttatctcacaatcatacttt-t 3756251  T
Q  353 ctttcatct 361  Q
    |||||||||    
T  3756250 ctttcatct 3756242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 258 - 350
Target Start/End: Original strand, 27864566 - 27864658
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatacttt 350  Q
    |||||||||||| ||||||||||| ||||||| ||||||| |||||||||||||||||||  ||||||||| ||||||||||||||| |||||    
T  27864566 aaaatgttacataaacaccatttattcatacatcccattgtacaccccatgtattagggatattttggtaagttcatctcacaaccacacttt 27864658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 258 - 362
Target Start/End: Complemental strand, 46827804 - 46827700
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctttc 357  Q
    ||||||||||||||||||| ||||||||||||| | |||| |||||| ||| |||| | ||||||||||||||| ||||||||| |||| ||||||||||    
T  46827804 aaaatgttacatgaacaccctttaatcatacactctattgtacacccaatgcattaagaacgttttggtaaatttatctcacaaacatattttctctttc 46827705  T
Q  358 atctc 362  Q
    |||||    
T  46827704 atctc 46827700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 258 - 355
Target Start/End: Original strand, 28988475 - 28988572
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctt 355  Q
    ||||||||||||||||||| |||| ||||||||| ||||| |||||||||| | ||||||| ||||| ||||||||||||| ||||| ||||||||||    
T  28988475 aaaatgttacatgaacaccctttattcatacacctcattgtacaccccatgcactagggacattttgataaattcatctcataaccacactttctctt 28988572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 258 - 362
Target Start/End: Complemental strand, 960968 - 960864
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctttc 357  Q
    ||||||||||||||||||| ||||||||||||| | |||| |||||| ||  ||||||||| ||||||||||||||||| | || | |||||||||||||    
T  960968 aaaatgttacatgaacaccctttaatcatacactctattgtacaccctatacattagggacattttggtaaattcatcttataatcgtactttctctttc 960869  T
Q  358 atctc 362  Q
    |||||    
T  960868 atctc 960864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 255 - 362
Target Start/End: Original strand, 35037004 - 35037111
Alignment:
Q  255 agaaaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctct 354  Q
    ||||||||||||||||| |||| ||||| ||||||| | |||| |||||||||| |||| |||  ||||||||||||||||||||||||||| ||| |||    
T  35037004 agaaaaatgttacatgagcaccctttaaccatacactctattgtacaccccatgcattaaggatattttggtaaattcatctcacaaccatattttttct 35037103  T
Q  355 ttcatctc 362  Q
    ||| ||||    
T  35037104 ttcttctc 35037111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 256 - 362
Target Start/End: Original strand, 38851513 - 38851619
Alignment:
Q  256 gaaaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctt 355  Q
    ||||||||||||||||| | | |||||||||||| |  | || |||| ||||| |||| |||| ||||| ||||||||||||||||||||||||||||||    
T  38851513 gaaaaatgttacatgaatatcctttaatcatacatcataatgtacactccatgcattatggacattttgataaattcatctcacaaccatactttctctt 38851612  T
Q  356 tcatctc 362  Q
    |||||||    
T  38851613 tcatctc 38851619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 252 - 350
Target Start/End: Complemental strand, 48463554 - 48463456
Alignment:
Q  252 attagaaaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatacttt 350  Q
    ||||| |||||||||||| ||||||||||| |||||||   ||||| ||| |||||||||||||||  ||||||||| |||||||||||||||||||||    
T  48463554 attaggaaaatgttacataaacaccatttattcatacatttcattgtacatcccatgtattagggatattttggtaagttcatctcacaaccatacttt 48463456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 252 - 355
Target Start/End: Original strand, 31680898 - 31681001
Alignment:
Q  252 attagaaaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttc 351  Q
    |||||||||||||||| | ||||||||||| |||||||  |||||| ||||||| | |||||||||  ||||||||| ||||||||||||||| |||||     
T  31680898 attagaaaaatgttacgtaaacaccatttattcatacattccattgtacaccccgtatattagggatattttggtaagttcatctcacaaccacacttta 31680997  T
Q  352 tctt 355  Q
    ||||    
T  31680998 tctt 31681001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 258 - 344
Target Start/End: Complemental strand, 1771364 - 1771278
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaacca 344  Q
    ||||||||||||||||||| |||| || |||||||||||| |||||||||||||||| ||  ||||| ||| |||||||||||||||    
T  1771364 aaaatgttacatgaacaccctttattcctacaccccattgtacaccccatgtattagagatattttgataagttcatctcacaacca 1771278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 258 - 344
Target Start/End: Complemental strand, 55966444 - 55966358
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaacca 344  Q
    |||||||||||| |||||| |||| ||||||| ||||||| ||| |||||||||||||||  ||||||||| |||||||||||||||    
T  55966444 aaaatgttacataaacaccctttattcatacatcccattgtacatcccatgtattagggatattttggtaagttcatctcacaacca 55966358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 289 - 362
Target Start/End: Original strand, 19879987 - 19880060
Alignment:
Q  289 accccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctttcatctc 362  Q
    |||| |||| ||||||||| ||||| |||| |||||||||||||||||||||| ||||||||||||||||||||    
T  19879987 accctattgtacaccccatatattatggacattttggtaaattcatctcacaatcatactttctctttcatctc 19880060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 299 - 362
Target Start/End: Complemental strand, 36004173 - 36004110
Alignment:
Q  299 acaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctttcatctc 362  Q
    ||||||||| |||||||||| ||||| |||||| ||||||||||||||||||||||||||||||    
T  36004173 acaccccatatattagggacattttgataaatttatctcacaaccatactttctctttcatctc 36004110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 258 - 355
Target Start/End: Original strand, 25051695 - 25051792
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctt 355  Q
    ||||||| ||||||||||  |||| || |||||||||||| |||||| ||||||||||||  ||||||||| |||||||||||| || ||||| ||||    
T  25051695 aaaatgtcacatgaacacactttattcctacaccccattgtacaccctatgtattagggatattttggtaagttcatctcacaatcacactttatctt 25051792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 258 - 355
Target Start/End: Original strand, 27550311 - 27550408
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctt 355  Q
    ||||||||||||||||||| |||| |  ||||| |||||| ||||| |||||||||||||  ||||||||| ||||||| ||||||| ||||| ||||    
T  27550311 aaaatgttacatgaacaccctttatttctacactccattgtacacctcatgtattagggatattttggtaagttcatcttacaaccacactttatctt 27550408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 258 - 355
Target Start/End: Original strand, 33703143 - 33703240
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctt 355  Q
    ||||||||||||||||||| |||| |  |||| |  |||| |||||||||||||||||||  ||||||||| ||||||||||||||| ||||| ||||    
T  33703143 aaaatgttacatgaacaccctttatttctacatcttattgtacaccccatgtattagggatattttggtaagttcatctcacaaccacactttatctt 33703240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 255 - 344
Target Start/End: Complemental strand, 43514787 - 43514698
Alignment:
Q  255 agaaaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaacca 344  Q
    |||||||||||||||||||||| |||| || ||||| |||||| ||||  ||||||||||||   ||||||||| |||||||||||||||    
T  43514787 agaaaaatgttacatgaacaccctttattcctacactccattgtacacttcatgtattagggttattttggtaagttcatctcacaacca 43514698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 256 - 355
Target Start/End: Complemental strand, 43949902 - 43949802
Alignment:
Q  256 gaaaaatgttacatgaacaccatttaat-catacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctct 354  Q
    |||||||| |||||||||||| ||| || | | |||| ||||| |||||||||||||||||||  ||||||||| ||||||||||||||| ||||| |||    
T  43949902 gaaaaatgatacatgaacacccttttattcctgcacctcattgtacaccccatgtattagggatattttggtaagttcatctcacaaccacactttatct 43949803  T
Q  355 t 355  Q
    |    
T  43949802 t 43949802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 256 - 355
Target Start/End: Complemental strand, 41327643 - 41327544
Alignment:
Q  256 gaaaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctt 355  Q
    ||||||||||||||  ||||| |||| ||| ||||||||||| |||||  ||| | || |||| ||||||||||||||||||||| ||| ||||||||||    
T  41327643 gaaaaatgttacatagacaccctttattcacacaccccattgtacaccttatgcactacggacattttggtaaattcatctcacatccacactttctctt 41327544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 258 - 343
Target Start/End: Complemental strand, 28982920 - 28982835
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaacc 343  Q
    ||||||||||||||||||| |||| |  ||||||| |||| ||| ||||| |||||||||  ||||||||| ||||||||||||||    
T  28982920 aaaatgttacatgaacaccctttatttctacaccctattgtacatcccatatattagggatattttggtaagttcatctcacaacc 28982835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 258 - 355
Target Start/End: Original strand, 35017735 - 35017831
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctt 355  Q
    ||||||||||||||||||| |||| || || | | ||||| |||||||||||| ||||||  ||||||||| ||||||||||||||| ||||| ||||    
T  35017735 aaaatgttacatgaacaccctttattcctatatctcattgtacaccccatgta-tagggatattttggtaagttcatctcacaaccacactttatctt 35017831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 258 - 355
Target Start/End: Original strand, 41847973 - 41848070
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctt 355  Q
    ||||||||||| ||||| | |||  ||| ||||| ||||| |||||||||| ||||| ||| |||||| ||||||||| |||||||| ||||||||||    
T  41847973 aaaatgttacaagaacatccttttttcacacacctcattgtacaccccatgcattagagacattttggcaaattcatcgcacaaccacactttctctt 41848070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 258 - 355
Target Start/End: Original strand, 41878408 - 41878505
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctt 355  Q
    ||||||||||||||||||  |||| ||||||||| ||||| |||||| ||  ||||||||  ||||| ||| ||||||||||||||| || |||||||    
T  41878408 aaaatgttacatgaacactctttattcatacacctcattgtacaccctatccattagggatattttgataagttcatctcacaaccaaaccttctctt 41878505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 258 - 355
Target Start/End: Complemental strand, 45490411 - 45490314
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctt 355  Q
    ||||||||||||||||||  |||| | ||||| || |||| ||||| |||||||||||||   ||| |||||||||||||||||||| ||||| ||||    
T  45490411 aaaatgttacatgaacacattttatttatacatccaattgtacacctcatgtattagggatactttagtaaattcatctcacaaccacactttatctt 45490314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 256 - 355
Target Start/End: Original strand, 39631100 - 39631200
Alignment:
Q  256 gaaaaatgttacatgaacaccatttaat-catacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctct 354  Q
    |||||||| ||||||||| || ||| || | |||||| ||||| ||||| |||||||||||||  ||||||||| ||||||||||||||| ||||| |||    
T  39631100 gaaaaatgatacatgaacccccttttattcctacacctcattgtacacctcatgtattagggatattttggtaagttcatctcacaaccacactttatct 39631199  T
Q  355 t 355  Q
    |    
T  39631200 t 39631200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 258 - 355
Target Start/End: Original strand, 12496958 - 12497055
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctt 355  Q
    ||||||||| ||||||||| |||| || ||||| |||||| ||| |||||||||||| ||  ||||||||| ||||||| |||| || ||||| ||||    
T  12496958 aaaatgttatatgaacaccctttattcctacactccattgtacatcccatgtattagagatattttggtaagttcatcttacaatcacactttatctt 12497055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 258 - 355
Target Start/End: Original strand, 23035982 - 23036079
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctt 355  Q
    ||||||||||||||||  | |||| || ||||||| |||| |||||| || |||||||||  |||| |||| ||||||||||||||| ||||| ||||    
T  23035982 aaaatgttacatgaacctcctttattcctacaccctattgtacaccctatatattagggatatttttgtaagttcatctcacaaccacactttatctt 23036079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 258 - 355
Target Start/End: Complemental strand, 27316811 - 27316714
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctt 355  Q
    ||||||||| | ||||||| |||| || |||||| ||||  ||||||||||||||| |||  ||||||||| ||||||||| ||||| ||||| ||||    
T  27316811 aaaatgttaaacgaacaccctttattcctacacctcattatacaccccatgtattaaggatattttggtaagttcatctcataaccacactttatctt 27316714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 259 - 355
Target Start/End: Complemental strand, 23204875 - 23204779
Alignment:
Q  259 aaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctt 355  Q
    |||||||||||||||||  |||| || |||| ||||||| ||| || ||||||||||||  |||| |||| ||||| ||||||||| ||||| ||||    
T  23204875 aaatgttacatgaacactctttattcctacatcccattgtacatcctatgtattagggatatttttgtaagttcatgtcacaaccacactttatctt 23204779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 253 - 336
Target Start/End: Complemental strand, 49229767 - 49229684
Alignment:
Q  253 ttagaaaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatct 336  Q
    |||| ||||||||| ||||||| | ||||||||||||||| |||| ||||  |||| |||| |||  || ||||||||||||||    
T  49229767 ttaggaaaatgttatatgaacatcctttaatcatacaccctattgtacacttcatgcattaaggatattctggtaaattcatct 49229684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 307
Target Start/End: Original strand, 30189275 - 30189324
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccat 307  Q
    |||||||||||||||||||||||| ||| |||| |||| | |||||||||    
T  30189275 aaaatgttacatgaacaccatttattcacacactccatcgtacaccccat 30189324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 295
Target Start/End: Complemental strand, 36004202 - 36004165
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccat 295  Q
    ||||||||||||||| ||| ||||||||||||||||||    
T  36004202 aaaatgttacatgaataccctttaatcatacaccccat 36004165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 5e-38; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 258 - 362
Target Start/End: Original strand, 35181518 - 35181622
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctttc 357  Q
    ||||||||||||||||||| ||||||||||||||| |||| |||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  35181518 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttggtaatttcatctcacaaccatactttctctttc 35181617  T
Q  358 atctc 362  Q
    |||||    
T  35181618 atctc 35181622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 258 - 362
Target Start/End: Original strand, 34304790 - 34304894
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctttc 357  Q
    ||||||||||||||||| | ||||||||||||||| |||| |||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  34304790 aaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattagggacattttggtaatttcatctcacaaccatactttctctttc 34304889  T
Q  358 atctc 362  Q
    |||||    
T  34304890 atctc 34304894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 255 - 362
Target Start/End: Complemental strand, 33630094 - 33629987
Alignment:
Q  255 agaaaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctct 354  Q
    |||||||||||||| ||||||| |||||||||||||| ||||| |||||| ||| ||||||||| |||| |||| ||||||||||||| |||||||||||    
T  33630094 agaaaaatgttacacgaacaccctttaatcatacacctcattgtacaccctatgcattagggacattttagtaatttcatctcacaactatactttctct 33629995  T
Q  355 ttcatctc 362  Q
    ||||||||    
T  33629994 ttcatctc 33629987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 253 - 362
Target Start/End: Complemental strand, 18066821 - 18066712
Alignment:
Q  253 ttagaaaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttct 352  Q
    |||| ||||||||||||||||||| ||||||||||||  | |||| ||| |||||||||||||||  |||| |||| |||||||||||||||||||||||    
T  18066821 ttaggaaaatgttacatgaacaccctttaatcatacattctattgtacatcccatgtattagggatattttagtaatttcatctcacaaccatactttct 18066722  T
Q  353 ctttcatctc 362  Q
    ||||||||||    
T  18066721 ctttcatctc 18066712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 254 - 355
Target Start/End: Complemental strand, 29801052 - 29800951
Alignment:
Q  254 tagaaaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctc 353  Q
    |||||||||||||||| ||||||||||| ||||||| ||||||| |||||||||||||||||||  ||||||||| ||||||||||||||| ||||| ||    
T  29801052 tagaaaaatgttacataaacaccatttattcatacatcccattgtacaccccatgtattagggatattttggtaagttcatctcacaaccacactttatc 29800953  T
Q  354 tt 355  Q
    ||    
T  29800952 tt 29800951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 253 - 355
Target Start/End: Complemental strand, 42197538 - 42197436
Alignment:
Q  253 ttagaaaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttct 352  Q
    |||| |||||||||||||||||||||||| || ||||||||||||||||| | ||||||||||||  ||||||||| ||||||||||||||| ||||| |    
T  42197538 ttaggaaaatgttacatgaacaccatttattcctacaccccattgcacacactatgtattagggatattttggtaagttcatctcacaaccacactttat 42197439  T
Q  353 ctt 355  Q
    |||    
T  42197438 ctt 42197436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 258 - 362
Target Start/End: Complemental strand, 16603724 - 16603620
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctttc 357  Q
    ||||||||||||| ||||| ||||||||||||||  |||  |||||||||| ||||  ||| |||||||||||||||||||||||||||||| |||||||    
T  16603724 aaaatgttacatgcacaccctttaatcatacaccttattatacaccccatgcattaaagacattttggtaaattcatctcacaaccatacttactctttc 16603625  T
Q  358 atctc 362  Q
    |||||    
T  16603624 atctc 16603620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 255 - 355
Target Start/End: Original strand, 42295194 - 42295294
Alignment:
Q  255 agaaaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctct 354  Q
    |||||||||||||||||||||| |||| || |||||| ||||| |||| ||||||||||||||  ||||||||| ||||||||||||||| ||||| |||    
T  42295194 agaaaaatgttacatgaacaccctttattcctacacctcattgtacactccatgtattagggatattttggtaagttcatctcacaaccacactttatct 42295293  T
Q  355 t 355  Q
    |    
T  42295294 t 42295294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 258 - 355
Target Start/End: Original strand, 11582768 - 11582865
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctt 355  Q
    ||||||||||||||||||| |||| || |||| ||||||| |||||| ||||||||||||  ||||||||| ||||||||||||||| ||||| ||||    
T  11582768 aaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcacaaccacactttatctt 11582865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 258 - 355
Target Start/End: Original strand, 29705364 - 29705461
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctt 355  Q
    ||||||||||||||||||| |||| |  |||||||||||| |||||||||||||||||||  ||||| ||| ||||||||||||||| ||||| ||||    
T  29705364 aaaatgttacatgaacaccctttatttctacaccccattgtacaccccatgtattagggatattttgataagttcatctcacaaccacactttatctt 29705461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 258 - 355
Target Start/End: Complemental strand, 36743581 - 36743484
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctt 355  Q
    ||||||||||||||||||| |||| || |||| ||||||| |||||| ||||||||||||  ||||||||| ||||||||||||||| ||||| ||||    
T  36743581 aaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcacaaccacactttatctt 36743484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 254 - 350
Target Start/End: Original strand, 20148758 - 20148854
Alignment:
Q  254 tagaaaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatacttt 350  Q
    |||||||||||||||| |||||| |||| ||||||| ||||||| ||||| ||| |||||||||  ||||||||| ||||||||||||||| |||||    
T  20148758 tagaaaaatgttacataaacaccctttattcatacatcccattgtacacctcatatattagggatattttggtaagttcatctcacaaccacacttt 20148854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 299 - 362
Target Start/End: Complemental strand, 10678209 - 10678146
Alignment:
Q  299 acaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctttcatctc 362  Q
    ||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||    
T  10678209 acaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctttcatctc 10678146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 256 - 355
Target Start/End: Original strand, 26125635 - 26125734
Alignment:
Q  256 gaaaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctt 355  Q
    |||||||||||||| |||||| |||| |||||||  |||||| |||||| ||||||||||||  ||||||||| ||||||||||||||| ||||| ||||    
T  26125635 gaaaaatgttacataaacaccctttattcatacattccattgtacaccctatgtattagggatattttggtaagttcatctcacaaccacactttatctt 26125734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 258 - 355
Target Start/End: Original strand, 1375544 - 1375641
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctt 355  Q
    ||||| ||||||||||||| |||| |||||||||| |||| ||||||||| |||||||||  |||||||||||| |||||||||| | ||||| ||||    
T  1375544 aaaattttacatgaacaccttttattcatacacccaattgtacaccccatatattagggatattttggtaaatttatctcacaactacactttatctt 1375641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 258 - 355
Target Start/End: Complemental strand, 2166061 - 2165964
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctt 355  Q
    ||||| |||||||||||||||||| || |||||||||||| | |||||||||||||| ||  ||||||||| ||||||||| ||||| ||||| ||||    
T  2166061 aaaatattacatgaacaccatttattcctacaccccattgtataccccatgtattagagatattttggtaagttcatctcataaccacactttatctt 2165964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 258 - 355
Target Start/End: Original strand, 5754905 - 5755002
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctt 355  Q
    ||||||||||||||||||| |||| || |||| ||||||| ||| ||||| |||||||||  ||||||||| ||||||||||||||| ||||| ||||    
T  5754905 aaaatgttacatgaacaccttttattcctacatcccattgtacatcccatatattagggatattttggtaagttcatctcacaaccacactttatctt 5755002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 258 - 362
Target Start/End: Complemental strand, 16358932 - 16358827
Alignment:
Q  258 aaaatgttacat-gaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctcttt 356  Q
    |||||||||||| ||| ||| ||||||||||||||| |||| ||| |||||| |||| | |  ||||| ||||||||||||||||||||||||||| |||    
T  16358932 aaaatgttacattgaagaccctttaatcatacaccctattgtacatcccatgcattaagaatattttgataaattcatctcacaaccatactttcttttt 16358833  T
Q  357 catctc 362  Q
    ||||||    
T  16358832 catctc 16358827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 256 - 343
Target Start/End: Complemental strand, 30912662 - 30912575
Alignment:
Q  256 gaaaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaacc 343  Q
    ||||||||||||||||||||| |||| || |||||||||||| ||||  ||||||||||||   ||||||||| ||||||||||||||    
T  30912662 gaaaaatgttacatgaacaccctttattcctacaccccattgtacacttcatgtattaggggtattttggtaagttcatctcacaacc 30912575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 255 - 350
Target Start/End: Original strand, 42699256 - 42699351
Alignment:
Q  255 agaaaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatacttt 350  Q
    |||||||||||||||||||||| |||| || |||||||||||| |||||  |||||||| |||  |||| |||| ||||||||||||||| |||||    
T  42699256 agaaaaatgttacatgaacaccctttattcctacaccccattgtacaccttatgtattatggatatttttgtaagttcatctcacaaccacacttt 42699351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 258 - 355
Target Start/End: Complemental strand, 30660840 - 30660743
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctt 355  Q
    ||||||||||||||||||| |||| |  |||| ||||||| |||||| ||||||||||||  ||||||||| ||||||| ||||||| ||||| ||||    
T  30660840 aaaatgttacatgaacaccctttatttctacatcccattgtacaccctatgtattagggatattttggtaagttcatcttacaaccacactttatctt 30660743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 265 - 355
Target Start/End: Complemental strand, 40528726 - 40528635
Alignment:
Q  265 tacatgaacaccatttaat-catacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctt 355  Q
    |||||||||||| ||| || || | ||||||||| ||||||||| |||||||||| ||||| |||||| |||||||||||| ||||||||||    
T  40528726 tacatgaacacccttttattcacaaaccccattgtacaccccatatattagggacattttgataaatttatctcacaaccacactttctctt 40528635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 249 - 355
Target Start/End: Original strand, 2546989 - 2547095
Alignment:
Q  249 aagattagaaaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatact 348  Q
    |||| ||| ||||||||||||||||||  |||| |  ||||| |||||| ||||| |||||||||||||  |||| |||| ||||||||||||||| |||    
T  2546989 aagaataggaaaatgttacatgaacactctttatttctacactccattgtacacctcatgtattagggatattttagtaagttcatctcacaaccacact 2547088  T
Q  349 ttctctt 355  Q
    || ||||    
T  2547089 ttatctt 2547095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 258 - 344
Target Start/End: Original strand, 45397318 - 45397404
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaacca 344  Q
    |||||||||| |||||||| |||| || |||||||||||  |||||| ||||||||||||  |||| |||| |||||||||||||||    
T  45397318 aaaatgttacgtgaacaccctttattcctacaccccattctacaccctatgtattagggatatttttgtaagttcatctcacaacca 45397404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 264 - 355
Target Start/End: Original strand, 31384672 - 31384763
Alignment:
Q  264 ttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctt 355  Q
    ||||||||||||| |||| || ||||  | |||| ||||||||||||||||| |  ||||||||| ||||||||||||||| ||||| ||||    
T  31384672 ttacatgaacaccctttattcttacattctattgtacaccccatgtattaggaatattttggtaagttcatctcacaaccacactttatctt 31384763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 258 - 362
Target Start/End: Complemental strand, 19386668 - 19386559
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccc-----catgtattagggacgttttggtaaattcatctcacaaccatactttct 352  Q
    ||||||||||||||||||| ||||||||||||||| |||  ||   |     |||| |||| | | |||||| ||||||||||||||||| |||||||||    
T  19386668 aaaatgttacatgaacaccctttaatcatacaccctattatactttctctttcatgcattaagaatgttttgataaattcatctcacaactatactttct 19386569  T
Q  353 ctttcatctc 362  Q
    ||||||||||    
T  19386568 ctttcatctc 19386559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 295
Target Start/End: Complemental strand, 10678238 - 10678201
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccat 295  Q
    ||||||||||||||| ||| ||||||||||||||||||    
T  10678238 aaaatgttacatgaataccctttaatcatacaccccat 10678201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 81; Significance: 5e-38; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 258 - 362
Target Start/End: Original strand, 33242405 - 33242509
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctttc 357  Q
    ||||||||||||||||||||||||||||||||||  |||| ||||||||||||||| |||| |||||||||||||||||||||| |||||||||||||||    
T  33242405 aaaatgttacatgaacaccatttaatcatacaccttattgtacaccccatgtattaaggacattttggtaaattcatctcacaaacatactttctctttc 33242504  T
Q  358 atctc 362  Q
    |||||    
T  33242505 atctc 33242509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 256 - 362
Target Start/End: Original strand, 27441542 - 27441648
Alignment:
Q  256 gaaaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctt 355  Q
    ||||||||||||||||||||| ||||||||||||||| |||| ||| || |||||||| |||  ||||||||||||||||||||||||||||||||||||    
T  27441542 gaaaaatgttacatgaacaccctttaatcatacaccctattgtacatcctatgtattaaggatattttggtaaattcatctcacaaccatactttctctt 27441641  T
Q  356 tcatctc 362  Q
    |||||||    
T  27441642 tcatctc 27441648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 258 - 356
Target Start/End: Original strand, 33253915 - 33254013
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctcttt 356  Q
    |||||||||||||||||||||||||||| |||||| |||| |||||||||| ||||||||| | |||||||||||||||||||| |||||||| |||||    
T  33253915 aaaatgttacatgaacaccatttaatcacacaccctattgtacaccccatgcattagggacatattggtaaattcatctcacaatcatactttatcttt 33254013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 256 - 350
Target Start/End: Complemental strand, 24204087 - 24203993
Alignment:
Q  256 gaaaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatacttt 350  Q
    |||||||||||||||||||||||||| || ||||||| |||| |||| ||||||||||||||  ||||||||| ||||||||||||||| |||||    
T  24204087 gaaaaatgttacatgaacaccatttattcctacaccctattgtacactccatgtattagggatattttggtaagttcatctcacaaccacacttt 24203993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 258 - 355
Target Start/End: Complemental strand, 13743319 - 13743222
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctt 355  Q
    ||||||||||||||||||| |||| ||||||| || |||| |||||||||||||||||||  ||||||||| ||||||||||||||| ||||| ||||    
T  13743319 aaaatgttacatgaacaccttttattcatacatccaattgtacaccccatgtattagggatattttggtaagttcatctcacaaccacactttatctt 13743222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 258 - 355
Target Start/End: Complemental strand, 13748819 - 13748722
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctt 355  Q
    ||||||||||||||||||| |||| ||||||| || |||| |||||||||||||||||||  ||||||||| ||||||||||||||| ||||| ||||    
T  13748819 aaaatgttacatgaacaccttttattcatacatccaattgtacaccccatgtattagggatattttggtaagttcatctcacaaccacactttatctt 13748722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 258 - 355
Target Start/End: Original strand, 3213402 - 3213499
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctt 355  Q
    |||||||||||| |||||| |||| ||||||| | ||||| ||||||||||||||| |||  ||||||||||||||| ||||||||||||||| ||||    
T  3213402 aaaatgttacataaacaccctttattcatacatctcattgtacaccccatgtattaaggatattttggtaaattcatttcacaaccatactttatctt 3213499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 258 - 355
Target Start/End: Original strand, 7292749 - 7292846
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctt 355  Q
    ||||||||||| |||||||||||| ||||||||| ||||  |||||| ||||||||||||  ||||||||| ||||||||||||||| ||||| ||||    
T  7292749 aaaatgttacaagaacaccatttattcatacacctcattatacaccctatgtattagggatattttggtaagttcatctcacaaccacactttatctt 7292846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 258 - 355
Target Start/End: Complemental strand, 9698431 - 9698334
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctt 355  Q
    ||||||||||||||||||| |||| || |||| ||||||| |||||| ||||||||||||  ||||||||| ||||||||||||||| ||||| ||||    
T  9698431 aaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcacaaccacactttatctt 9698334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 258 - 355
Target Start/End: Original strand, 21279931 - 21280028
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctt 355  Q
    ||||||||||||||||||| |||| |  ||||  |||||||||| |||||||||||||||  ||||||||||||||||||||||||| ||||| ||||    
T  21279931 aaaatgttacatgaacaccctttatttctacattccattgcacatcccatgtattagggatattttggtaaattcatctcacaaccacactttatctt 21280028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 258 - 355
Target Start/End: Complemental strand, 26670107 - 26670010
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctt 355  Q
    ||||||||||||||||||| |||| || |||||| ||||| ||||| |||||||||||||  ||||||||| ||||||||||||||| ||||| ||||    
T  26670107 aaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtattagggatattttggtaagttcatctcacaaccacactttatctt 26670010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 258 - 350
Target Start/End: Original strand, 7367551 - 7367643
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatacttt 350  Q
    ||||||||| ||||||| |||||| ||||||||| ||||| ||| |||||||||||||||  ||||||||| ||||||||||||||| |||||    
T  7367551 aaaatgttatatgaacatcatttattcatacacctcattgtacatcccatgtattagggatattttggtaagttcatctcacaaccacacttt 7367643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 258 - 355
Target Start/End: Original strand, 26466801 - 26466898
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctt 355  Q
    |||||||||||| |||||| |||| || |||||||||||| |||| |||||||||||||   ||||||||| ||||||||||||||| ||||| ||||    
T  26466801 aaaatgttacataaacaccctttattcctacaccccattgtacactccatgtattagggttattttggtaagttcatctcacaaccacactttatctt 26466898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 258 - 355
Target Start/End: Original strand, 30014345 - 30014442
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctt 355  Q
    ||||||||||||||||||| |||| || |||| ||||||  ||| ||||||||||||| |  ||||||||| ||||||||||||||||||||| ||||    
T  30014345 aaaatgttacatgaacaccctttattcctacatcccattatacatcccatgtattaggcatattttggtaagttcatctcacaaccatactttatctt 30014442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 255 - 355
Target Start/End: Original strand, 30735981 - 30736081
Alignment:
Q  255 agaaaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctct 354  Q
    |||||||||||||||||||||  |||| || |||||||||||| ||||| |||||||||| ||  ||||||||| |||||||||||| || ||||| |||    
T  30735981 agaaaaatgttacatgaacactttttattcctacaccccattgtacacctcatgtattagtgatattttggtaagttcatctcacaatcacactttatct 30736080  T
Q  355 t 355  Q
    |    
T  30736081 t 30736081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 258 - 362
Target Start/End: Complemental strand, 31109320 - 31109216
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctttc 357  Q
    ||||||||||||||||||| |||||||||||| ||||||  |||||||||| | ||||||  ||||| |||||||| || || |||| | ||||||||||    
T  31109320 aaaatgttacatgaacaccctttaatcatacatcccattatacaccccatgcactagggatattttgataaattcaacttacgaccacattttctctttc 31109221  T
Q  358 atctc 362  Q
    |||||    
T  31109220 atctc 31109216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 258 - 355
Target Start/End: Complemental strand, 7273433 - 7273336
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctt 355  Q
    ||||||||||||||||||| |||| || ||||||  |||| |||||||||||||||| ||  ||||||||| |||||||||||| || ||||| ||||    
T  7273433 aaaatgttacatgaacaccctttattcctacaccttattgtacaccccatgtattagagatattttggtaagttcatctcacaatcacactttatctt 7273336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 258 - 355
Target Start/End: Complemental strand, 21293775 - 21293678
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctt 355  Q
    |||||||||||| |||||| |||| |||||||   || || ||||||||||||||| |||  ||||||||||||||| ||||||||| ||||| ||||    
T  21293775 aaaatgttacataaacaccctttattcatacatttcactgtacaccccatgtattaaggatattttggtaaattcatttcacaaccacactttatctt 21293678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 81; Significance: 5e-38; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 258 - 362
Target Start/End: Original strand, 43114559 - 43114663
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctttc 357  Q
    ||||||||||||||||||| ||||||||||||||| |||| |||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  43114559 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttggtaatttcatctcacaaccatactttctctttc 43114658  T
Q  358 atctc 362  Q
    |||||    
T  43114659 atctc 43114663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 256 - 362
Target Start/End: Complemental strand, 11825754 - 11825648
Alignment:
Q  256 gaaaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctt 355  Q
    ||||||||||||||||||||| ||||||||||||||| |||| |||||||||| ||||||||| ||||||||| |||||||||||| |||||||||||||    
T  11825754 gaaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttggtaatttcatctcacaatcatactttctctt 11825655  T
Q  356 tcatctc 362  Q
    |||||||    
T  11825654 tcatctc 11825648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 256 - 362
Target Start/End: Complemental strand, 41282074 - 41281968
Alignment:
Q  256 gaaaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctt 355  Q
    ||||||||||||||||||||| ||||||||||||||| |||| |||||||||| ||||||||| ||||| ||| ||||||||||||||||||||||||||    
T  41282074 gaaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttgataatttcatctcacaaccatactttctctt 41281975  T
Q  356 tcatctc 362  Q
    |||||||    
T  41281974 tcatctc 41281968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 258 - 362
Target Start/End: Complemental strand, 966932 - 966828
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctttc 357  Q
    ||||||||||||||||||| ||||||||||||||| |||| |||||||||| |||| | ||||||||||||||||||||||||| |||||||||||||||    
T  966932 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattaagaacgttttggtaaattcatctcacaaacatactttctctttc 966833  T
Q  358 atctc 362  Q
    |||||    
T  966832 atctc 966828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 258 - 362
Target Start/End: Complemental strand, 12415558 - 12415454
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctttc 357  Q
    ||||||||||||||||||| ||||||||||||||  |||| |||||||||| ||||||||| ||||||||| || |||||||||||||||||||||||||    
T  12415558 aaaatgttacatgaacaccctttaatcatacaccttattgtacaccccatgcattagggacattttggtaattttatctcacaaccatactttctctttc 12415459  T
Q  358 atctc 362  Q
    |||||    
T  12415458 atctc 12415454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 258 - 362
Target Start/End: Complemental strand, 12427618 - 12427514
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctttc 357  Q
    ||||||||||||||||||| ||||||||||||||  |||| |||||||||| ||||||||| ||||||||| || |||||||||||||||||||||||||    
T  12427618 aaaatgttacatgaacaccctttaatcatacaccttattgtacaccccatgcattagggacattttggtaattttatctcacaaccatactttctctttc 12427519  T
Q  358 atctc 362  Q
    |||||    
T  12427518 atctc 12427514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 258 - 362
Target Start/End: Original strand, 16803970 - 16804074
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctttc 357  Q
    ||||||||||||||||||| ||||||||||||||| |||| ||| |||||| ||||||||| ||||| ||| ||||||||||||||||||||||||||||    
T  16803970 aaaatgttacatgaacaccctttaatcatacaccctattgtacatcccatgcattagggacattttgataatttcatctcacaaccatactttctctttc 16804069  T
Q  358 atctc 362  Q
    |||||    
T  16804070 atctc 16804074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 258 - 362
Target Start/End: Original strand, 16843252 - 16843356
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctttc 357  Q
    ||||||||||||||||||| ||||||||||||||| |||| ||| |||||| ||||||||| ||||| ||| ||||||||||||||||||||||||||||    
T  16843252 aaaatgttacatgaacaccctttaatcatacaccctattgtacatcccatgcattagggacattttgataatttcatctcacaaccatactttctctttc 16843351  T
Q  358 atctc 362  Q
    |||||    
T  16843352 atctc 16843356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 258 - 362
Target Start/End: Original strand, 18491707 - 18491811
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctttc 357  Q
    ||||||||||||||||||| ||||||||||||||| |||| ||||| |||| |||| | || |||||||||||||||||||||||||||||| |||||||    
T  18491707 aaaatgttacatgaacaccctttaatcatacaccctattgtacacctcatgcattaagaacattttggtaaattcatctcacaaccatacttactctttc 18491806  T
Q  358 atctc 362  Q
    |||||    
T  18491807 atctc 18491811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 262 - 362
Target Start/End: Complemental strand, 34895835 - 34895735
Alignment:
Q  262 tgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctttcatct 361  Q
    |||||||||||||||||||||||| |||||| |||| |||||||||| ||||||||| | |||||||||||||||||||| |||||||| ||||||||||    
T  34895835 tgttacatgaacaccatttaatcacacaccctattgtacaccccatgcattagggacatattggtaaattcatctcacaatcatactttatctttcatct 34895736  T
Q  362 c 362  Q
    |    
T  34895735 c 34895735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 256 - 362
Target Start/End: Complemental strand, 4299520 - 4299414
Alignment:
Q  256 gaaaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctt 355  Q
    ||||||||||| ||||||||| ||||||||||||||| |||| |||| ||||| ||||  ||| |||||||||||||||||||||| ||||||| |||||    
T  4299520 gaaaaatgttatatgaacaccctttaatcatacaccctattgtacactccatgcattaatgacattttggtaaattcatctcacaatcatacttactctt 4299421  T
Q  356 tcatctc 362  Q
    | |||||    
T  4299420 taatctc 4299414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 253 - 341
Target Start/End: Complemental strand, 6518571 - 6518484
Alignment:
Q  253 ttagaaaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaa 341  Q
    |||||||||||||||||||||||| ||||||||||||| | |||| |||||||||| ||||||||| ||||||||| ||||||||||||    
T  6518571 ttagaaaaatgttacatgaacacc-tttaatcatacactctattgtacaccccatgcattagggacattttggtaatttcatctcacaa 6518484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 258 - 355
Target Start/End: Original strand, 1750416 - 1750513
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctt 355  Q
    ||||||||||||||||||| |||| || |||||||||||| |||||| ||||||||||||  |||| |||| ||||||||||||||| ||||| ||||    
T  1750416 aaaatgttacatgaacaccctttattcctacaccccattgtacaccctatgtattagggatatttttgtaagttcatctcacaaccacactttatctt 1750513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 258 - 355
Target Start/End: Complemental strand, 34817874 - 34817777
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctt 355  Q
    ||||||||||||||||||| |||| ||| ||||| ||||| |||||||||| | || | || ||||||||||||||||||||||||| ||||||||||    
T  34817874 aaaatgttacatgaacaccctttattcacacacctcattgtacaccccatgcactacgcacattttggtaaattcatctcacaaccacactttctctt 34817777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 258 - 355
Target Start/End: Complemental strand, 4764824 - 4764727
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctt 355  Q
    |||||||||||| ||||||||||| || ||||||| |||| |||||||||||||||   |  ||||||||||||||||||||||||| ||||| ||||    
T  4764824 aaaatgttacatcaacaccatttattcctacaccctattgtacaccccatgtattataaatattttggtaaattcatctcacaaccacactttatctt 4764727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 258 - 355
Target Start/End: Complemental strand, 12302351 - 12302254
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctt 355  Q
    ||||||||||||||||||| |||| |  |||||||||||| |||||| ||||||||||||  |||| |||| ||||||||||||||| ||||| ||||    
T  12302351 aaaatgttacatgaacaccctttatttctacaccccattgtacaccctatgtattagggatatttttgtaagttcatctcacaaccacactttatctt 12302254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 258 - 355
Target Start/End: Original strand, 16096749 - 16096846
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctt 355  Q
    ||||||||||||||||||| |||| || |||||||||||  |||||||||||||||||||  ||||||| | || |||||||||||| ||||| ||||    
T  16096749 aaaatgttacatgaacaccctttattcctacaccccattatacaccccatgtattagggatattttggtgagttaatctcacaaccacactttatctt 16096846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 258 - 355
Target Start/End: Original strand, 19047159 - 19047256
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctt 355  Q
    ||||||||||||||||||| |||| || ||||  |||||| |||||| ||||||||||||  ||||||||| ||||||||||||||| ||||| ||||    
T  19047159 aaaatgttacatgaacaccctttattcctacattccattgtacaccctatgtattagggatattttggtaagttcatctcacaaccacactttatctt 19047256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 254 - 355
Target Start/End: Complemental strand, 43490503 - 43490402
Alignment:
Q  254 tagaaaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctc 353  Q
    ||||||||||||||||||||||| |||| || |||| ||||||| |||| | ||||||||||||  ||||||||| ||||||||| ||||| ||||| ||    
T  43490503 tagaaaaatgttacatgaacaccctttattcctacatcccattgtacactctatgtattagggatattttggtaagttcatctcataaccacactttatc 43490404  T
Q  354 tt 355  Q
    ||    
T  43490403 tt 43490402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 278 - 362
Target Start/End: Complemental strand, 12531740 - 12531657
Alignment:
Q  278 tttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctttcatctc 362  Q
    ||||||||||||||| |||| ||||| || | |||| || | |||||||||||||||||||||||||||||||||||||||||||    
T  12531740 tttaatcatacacccaattgtacacctcaagcattatgggc-ttttggtaaattcatctcacaaccatactttctctttcatctc 12531657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 280 - 362
Target Start/End: Complemental strand, 4452026 - 4451944
Alignment:
Q  280 taatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctttcatctc 362  Q
    |||||||||| |  |||| |||||  ||| ||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  4452026 taatcatacatcttattgtacaccatatgcattagggatattttggtaaattcatctcacaaccatactttctctttcatctc 4451944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 258 - 355
Target Start/End: Complemental strand, 13780833 - 13780736
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctt 355  Q
    |||||||||||| |||||  |||| ||| ||||| ||||| |||||||||  ||||||||  ||||| ||||||||||||||||||| ||||||||||    
T  13780833 aaaatgttacatcaacacattttattcacacacctcattgtacaccccatacattagggatattttgataaattcatctcacaaccacactttctctt 13780736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 253 - 362
Target Start/End: Original strand, 14285673 - 14285782
Alignment:
Q  253 ttagaaaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttct 352  Q
    |||| ||||| |||||  |||||| ||||||||||||||| |||| |||||| || |||||  ||  ||||||||||||||||||| |  ||||||||||    
T  14285673 ttaggaaaatattacacaaacaccctttaatcatacaccctattgtacaccctatatattaaagatattttggtaaattcatctcagagtcatactttct 14285772  T
Q  353 ctttcatctc 362  Q
    ||||||||||    
T  14285773 ctttcatctc 14285782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 258 - 355
Target Start/End: Original strand, 30838634 - 30838731
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctt 355  Q
    ||||||||||||||||||| |||| |  |||| |  |||| |||||||||||||||||||  ||||||||| ||||||||||||||| ||||| ||||    
T  30838634 aaaatgttacatgaacaccctttatttctacatcttattgtacaccccatgtattagggatattttggtaagttcatctcacaaccacactttatctt 30838731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 258 - 355
Target Start/End: Complemental strand, 43335861 - 43335764
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctt 355  Q
    ||||||||| ||||||| |||||| || |||||| ||||| ||| |||||||||||||||  ||||||||| ||||||||||||| | ||||| ||||    
T  43335861 aaaatgttatatgaacatcatttattcctacacctcattgtacatcccatgtattagggatattttggtaagttcatctcacaactacactttatctt 43335764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 256 - 344
Target Start/End: Original strand, 7070416 - 7070504
Alignment:
Q  256 gaaaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaacca 344  Q
    ||||||||||||||||||||| |||| ||||||| ||||||| |  | |||| |||| ||||| ||||| ||||||||||| |||||||    
T  7070416 gaaaaatgttacatgaacaccctttattcatacatcccattgtaacctccatttattggggacattttgataaattcatcttacaacca 7070504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 254 - 352
Target Start/End: Complemental strand, 8896685 - 8896587
Alignment:
Q  254 tagaaaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttct 352  Q
    ||||||||||||||||||||||| |||| ||| |||  |||||| |||||| ||  | |||| |  |||||||||||||||||||||| || |||||||    
T  8896685 tagaaaaatgttacatgaacaccctttattcacacattccattgtacaccctatacaataggaatattttggtaaattcatctcacaatcacactttct 8896587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 255 - 335
Target Start/End: Original strand, 33229300 - 33229381
Alignment:
Q  255 agaaaaatgttacatgaacaccatttaat-catacaccccattgcacaccccatgtattagggacgttttggtaaattcatc 335  Q
    ||||||||| |||||||||||| ||| || | |||||| ||||| |||||||||||||||||||  ||||||||| ||||||    
T  33229300 agaaaaatgatacatgaacacccttttattcctacacctcattgtacaccccatgtattagggatattttggtaagttcatc 33229381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 258 - 352
Target Start/End: Original strand, 42026769 - 42026865
Alignment:
Q  258 aaaatgttacatgaacacc--atttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttct 352  Q
    |||||||||||||||||||  ||||| |||||||  |||||| ||| |||  | ||||||||  |||||| |||||||||||||||| | |||||||    
T  42026769 aaaatgttacatgaacacccaatttattcatacattccattgtacatcccgcgcattagggatattttggcaaattcatctcacaactacactttct 42026865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 350
Target Start/End: Complemental strand, 42849915 - 42849864
Alignment:
Q  299 acaccccatgtattagggacgttttggtaaattcatctcacaaccatacttt 350  Q
    |||||||||||||||||||  ||||| ||| ||||||||||||||| |||||    
T  42849915 acaccccatgtattagggatattttgataagttcatctcacaaccacacttt 42849864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 81; Significance: 5e-38; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 258 - 362
Target Start/End: Original strand, 44112679 - 44112783
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctttc 357  Q
    ||||||||||||||||||| ||||||||||||||| |||| |||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  44112679 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttggtaatttcatctcacaaccatactttctctttc 44112778  T
Q  358 atctc 362  Q
    |||||    
T  44112779 atctc 44112783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 258 - 362
Target Start/End: Original strand, 48119630 - 48119734
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctttc 357  Q
    ||||||||||||||||||| ||||||||||||||| |||| |||||||||| |||| |||  ||||||||||||||||||||||||||||||||||||||    
T  48119630 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattaaggatattttggtaaattcatctcacaaccatactttctctttc 48119729  T
Q  358 atctc 362  Q
    |||||    
T  48119730 atctc 48119734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 258 - 362
Target Start/End: Original strand, 35003296 - 35003400
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctttc 357  Q
    ||||||||||||||||||| ||||||||||||||| |||| |||||||||  |||| |||  ||||||||||||||||||||||||||||||||||||||    
T  35003296 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatacattaaggatattttggtaaattcatctcacaaccatactttctctttc 35003395  T
Q  358 atctc 362  Q
    |||||    
T  35003396 atctc 35003400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 258 - 362
Target Start/End: Complemental strand, 45427843 - 45427739
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctttc 357  Q
    ||||||||||||||| ||| ||||||||||||||| |||| |||| ||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  45427843 aaaatgttacatgaataccttttaatcatacaccctattgtacactccatgcattagggacattttggtaatttcatctcacaaccatactttctctttc 45427744  T
Q  358 atctc 362  Q
    |||||    
T  45427743 atctc 45427739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 252 - 362
Target Start/End: Complemental strand, 38113299 - 38113189
Alignment:
Q  252 attagaaaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttc 351  Q
    ||||| ||||||||| ||||||||| ||||||||||||||| |||| |||||||||| ||||  ||| |||||||||||||||||||||||||||||| |    
T  38113299 attaggaaaatgttatatgaacaccctttaatcatacaccctattgtacaccccatgcattaatgacattttggtaaattcatctcacaaccatacttac 38113200  T
Q  352 tctttcatctc 362  Q
    |||||||||||    
T  38113199 tctttcatctc 38113189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 253 - 362
Target Start/End: Original strand, 41065150 - 41065259
Alignment:
Q  253 ttagaaaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttct 352  Q
    |||| ||||||||||||||||||| |||||||||||||||  ||| |||||||||| ||||||| | ||||||||| |||||||||||||||||||||||    
T  41065150 ttaggaaaatgttacatgaacaccctttaatcatacaccctgttgtacaccccatgcattaggggcattttggtaatttcatctcacaaccatactttct 41065249  T
Q  353 ctttcatctc 362  Q
    ||||| ||||    
T  41065250 ctttcctctc 41065259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 258 - 362
Target Start/End: Original strand, 38335920 - 38336024
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctttc 357  Q
    ||||||||||||||||||| ||||||||||||||  |||| ||| |||||| |||| |||  ||||||||||||||||||||||||||||||||||||||    
T  38335920 aaaatgttacatgaacaccctttaatcatacaccttattgtacatcccatgcattaaggatattttggtaaattcatctcacaaccatactttctctttc 38336019  T
Q  358 atctc 362  Q
    |||||    
T  38336020 atctc 38336024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 258 - 362
Target Start/End: Complemental strand, 35000211 - 35000107
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctttc 357  Q
    ||||||||||||||||||| ||||||||||||| | |||| | ||  |||||||||||||| ||||| |||||| |||||||||||||||||||||||||    
T  35000211 aaaatgttacatgaacaccttttaatcatacactctattgtatacttcatgtattagggacattttgataaatttatctcacaaccatactttctctttc 35000112  T
Q  358 atctc 362  Q
    |||||    
T  35000111 atctc 35000107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 258 - 362
Target Start/End: Original strand, 46168385 - 46168489
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctttc 357  Q
    ||||||||||||||||||| |||||||||| | || |||| |||||| ||| |||| |||  ||||||||||||||||||||||||||||||||||||||    
T  46168385 aaaatgttacatgaacaccctttaatcatatatcctattgtacacccaatgcattaaggatattttggtaaattcatctcacaaccatactttctctttc 46168484  T
Q  358 atctc 362  Q
    |||||    
T  46168485 atctc 46168489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 253 - 362
Target Start/End: Original strand, 45705822 - 45705931
Alignment:
Q  253 ttagaaaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttct 352  Q
    |||| ||||||||| ||||||||| ||||||||||||  | |||| |||| ||||| |||| |||| ||||| |||||||||||||||||||||||||||    
T  45705822 ttaggaaaatgttatatgaacaccctttaatcatacattctattgtacactccatgcattatggacattttgataaattcatctcacaaccatactttct 45705921  T
Q  353 ctttcatctc 362  Q
    ||||||||||    
T  45705922 ctttcatctc 45705931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 258 - 362
Target Start/End: Complemental strand, 45639830 - 45639726
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctttc 357  Q
    ||||||||||||||||||  |||||||||||| || |||| |||||||||  |||| |||  |||||||||||||||||||||| |||||||||||||||    
T  45639830 aaaatgttacatgaacactctttaatcatacatcctattgtacaccccatacattaaggatattttggtaaattcatctcacaatcatactttctctttc 45639731  T
Q  358 atctc 362  Q
    |||||    
T  45639730 atctc 45639726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 258 - 355
Target Start/End: Complemental strand, 43571184 - 43571087
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctt 355  Q
    ||||||||||||||||||| |||| || |||||| ||||| |||||||||||||||||||  ||||||||| ||||||||||||||| ||||| ||||    
T  43571184 aaaatgttacatgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttggtaagttcatctcacaaccacactttatctt 43571087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 253 - 350
Target Start/End: Complemental strand, 2497665 - 2497568
Alignment:
Q  253 ttagaaaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatacttt 350  Q
    ||||||||||||||||| ||||||||||| |||||||  |||||| ||||||||| ||||| |||  ||||||||| ||||||||||||||| |||||    
T  2497665 ttagaaaaatgttacataaacaccatttattcatacattccattgtacaccccatatattaaggatattttggtaagttcatctcacaaccacacttt 2497568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 258 - 355
Target Start/End: Original strand, 5489778 - 5489875
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctt 355  Q
    ||||||||||||||||||| |||| || |||| ||||||| |||||| ||||||||||||  ||||||||| ||||||||||||||| ||||| ||||    
T  5489778 aaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcacaaccacactttatctt 5489875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 258 - 355
Target Start/End: Original strand, 37814780 - 37814877
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctt 355  Q
    |||||||||||| |||||| |||| ||||||| | ||||| ||||||||||||||| |||  ||||||||||||||| ||||||||| ||||| ||||    
T  37814780 aaaatgttacataaacaccctttattcatacatctcattgtacaccccatgtattaaggatattttggtaaattcatttcacaaccacactttatctt 37814877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 258 - 355
Target Start/End: Complemental strand, 48499060 - 48498963
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctt 355  Q
    ||||||||||||||||||  |||| |  ||||| |||||| ||||| |||||||||||||  ||||||||| ||||||||||||||| ||||| ||||    
T  48499060 aaaatgttacatgaacactctttatttctacactccattgtacacctcatgtattagggatattttggtaagttcatctcacaaccacactttatctt 48498963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 258 - 362
Target Start/End: Original strand, 26585464 - 26585568
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctttc 357  Q
    ||||||||| |||||||   |||||||||||||   |||| |||||||||| |||| |||  |||| ||||||||||||| ||| |||||||||||||||    
T  26585464 aaaatgttagatgaacattctttaatcatacactatattgtacaccccatgcattaaggatattttagtaaattcatctcgcaatcatactttctctttc 26585563  T
Q  358 atctc 362  Q
    |||||    
T  26585564 atctc 26585568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 254 - 355
Target Start/End: Original strand, 4401325 - 4401427
Alignment:
Q  254 tagaaaaatgttacatgaacac-catttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttct 352  Q
    |||||||||| ||||||||||| | |||| || |||||  ||||| |||||||||||||||| ||  ||||||||| ||||||||||||||| ||||| |    
T  4401325 tagaaaaatgatacatgaacactcttttattcctacacttcattgtacaccccatgtattagagatattttggtaagttcatctcacaaccacactttat 4401424  T
Q  353 ctt 355  Q
    |||    
T  4401425 ctt 4401427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 258 - 355
Target Start/End: Complemental strand, 23989622 - 23989524
Alignment:
Q  258 aaaatgttacatgaacaccatttaat-catacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctt 355  Q
    ||||||||||||||||||| ||| || ||||||| | |||| | |||| ||||||||||||  |||||||||||| |||||||||||| ||||| ||||    
T  23989622 aaaatgttacatgaacacccttttattcatacactcaattgtataccctatgtattagggatattttggtaaatttatctcacaaccacactttatctt 23989524  T

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Target: chr1; HSP #20
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 258 - 355
Target Start/End: Complemental strand, 750403 - 750306
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctt 355  Q
    |||||||||| |||||||| ||   || |||||||||||| ||||||||||||| |||||  ||||| ||||||||||||| ||||| ||||| ||||    
T  750403 aaaatgttacgtgaacacccttatttcctacaccccattgtacaccccatgtatcagggatattttgataaattcatctcaaaaccacactttatctt 750306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 258 - 355
Target Start/End: Complemental strand, 24769597 - 24769500
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctt 355  Q
    |||||||| |||||||||| |||| |  ||||| |||||| |||||||||||||||||||  ||||||||| ||| | ||||||||| ||||| ||||    
T  24769597 aaaatgtttcatgaacaccttttatttctacactccattgtacaccccatgtattagggatattttggtaagttcttatcacaaccacactttatctt 24769500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 256 - 355
Target Start/End: Original strand, 7447826 - 7447924
Alignment:
Q  256 gaaaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctt 355  Q
    ||||||||||||||||||| | |||| || |||| ||||||| ||| |||||||||||  ||  ||||| ||| ||||||||||||||| ||||| ||||    
T  7447826 gaaaaatgttacatgaacatcctttattcctacatcccattgtaca-cccatgtattacagatattttgataagttcatctcacaaccacactttatctt 7447924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 258 - 313
Target Start/End: Original strand, 14427349 - 14427404
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtatta 313  Q
    ||||||||||||||||||| ||||||||||||||| |||| ||||| |||| ||||    
T  14427349 aaaatgttacatgaacaccctttaatcatacaccctattgtacacctcatgcatta 14427404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 344
Target Start/End: Complemental strand, 50448358 - 50448272
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaacca 344  Q
    ||||||||||||||||||  |||| |  ||||| |||||| |||||  ||||||||||||  |||| |||| ||||||| |||||||    
T  50448358 aaaatgttacatgaacactctttatttctacactccattgtacaccttatgtattagggatatttttgtaagttcatcttacaacca 50448272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 258 - 362
Target Start/End: Complemental strand, 35554 - 35450
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctttc 357  Q
    |||||||||||| |||||||||||||||||||||  |||| |||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||    
T  35554 aaaatgttacataaacaccatttaatcatacaccatattgtacaccccatgcattagggacatattggtaaattcatctcacaaccatactttctctttc 35455  T
Q  358 atctc 362  Q
    |||||    
T  35454 atctc 35450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 1e-35; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 258 - 362
Target Start/End: Original strand, 9434126 - 9434230
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctttc 357  Q
    ||||||||||||||||||| ||||||||||||| | |||| |||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  9434126 aaaatgttacatgaacaccctttaatcatacactctattgtacaccccatgcattagggacattttggtaatttcatctcacaaccatactttctctttc 9434225  T
Q  358 atctc 362  Q
    |||||    
T  9434226 atctc 9434230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 258 - 362
Target Start/End: Complemental strand, 4190363 - 4190259
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctttc 357  Q
    ||||||||||||||||||| ||||||||||||||| |||| |||||  ||||||||| ||  ||||||||||||||||||||||||||||||||||||||    
T  4190363 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccttatgtattagagatattttggtaaattcatctcacaaccatactttctctttc 4190264  T
Q  358 atctc 362  Q
    |||||    
T  4190263 atctc 4190259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 258 - 362
Target Start/End: Complemental strand, 10457990 - 10457886
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctttc 357  Q
    ||||||||||||||||||| ||||||||||||||| |||| |||||||||| |||| |||  |||||||||||| |||||||||||||||||||||||||    
T  10457990 aaaatgttacatgaacaccttttaatcatacaccctattgtacaccccatgcattaaggatattttggtaaatttatctcacaaccatactttctctttc 10457891  T
Q  358 atctc 362  Q
    |||||    
T  10457890 atctc 10457886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 253 - 362
Target Start/End: Original strand, 25996265 - 25996374
Alignment:
Q  253 ttagaaaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttct 352  Q
    |||| ||||||||||||||||||| |||||||||||| |  |||| ||||||||| ||||| |||| ||||||||||||||||||||||||||| |||||    
T  25996265 ttaggaaaatgttacatgaacaccctttaatcatacatcttattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatattttct 25996364  T
Q  353 ctttcatctc 362  Q
    ||||||||||    
T  25996365 ctttcatctc 25996374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 258 - 355
Target Start/End: Original strand, 40808867 - 40808964
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctt 355  Q
    |||||||||||| ||||||||||| || |||||||||||| |||||||||||||||||||  ||||||||| ||||||||||||||| ||||| ||||    
T  40808867 aaaatgttacatcaacaccatttattcctacaccccattgtacaccccatgtattagggatattttggtaagttcatctcacaaccacactttatctt 40808964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 258 - 362
Target Start/End: Original strand, 34791831 - 34791935
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctttc 357  Q
    ||||||||||||||||||| ||||||||||||||  |||| | ||| |||| ||||||||| ||||  ||| ||||||||||||||||||||||||||||    
T  34791831 aaaatgttacatgaacaccctttaatcatacaccatattgtaaacctcatgcattagggacattttaataatttcatctcacaaccatactttctctttc 34791930  T
Q  358 atctc 362  Q
    |||||    
T  34791931 atctc 34791935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 258 - 362
Target Start/End: Original strand, 51757595 - 51757699
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctttc 357  Q
    ||||| |||||| |||||| ||||||||||||||| |||| ||||| |||| |||| |||| |||| |||| ||||||||||||||||||||||||||||    
T  51757595 aaaatattacataaacaccctttaatcatacaccctattgtacacctcatgcattatggacattttagtaatttcatctcacaaccatactttctctttc 51757694  T
Q  358 atctc 362  Q
    |||||    
T  51757695 atctc 51757699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 258 - 350
Target Start/End: Complemental strand, 45127026 - 45126934
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatacttt 350  Q
    |||||||||||| |||||| |||| ||||||| ||||||| |||||||||||||||||||  ||||||||| ||||||||||||||| |||||    
T  45127026 aaaatgttacataaacaccctttattcatacatcccattgtacaccccatgtattagggatattttggtaagttcatctcacaaccacacttt 45126934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 258 - 361
Target Start/End: Complemental strand, 52628075 - 52627972
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctttc 357  Q
    |||||||||| |||||||| |||||||||||| || |||| ||||| |||| |||| | |  |||||||||||||||||||||| |||||||||||||||    
T  52628075 aaaatgttacgtgaacaccctttaatcatacatcctattgtacacctcatgcattaagtatattttggtaaattcatctcacaatcatactttctctttc 52627976  T
Q  358 atct 361  Q
    ||||    
T  52627975 atct 52627972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 258 - 344
Target Start/End: Original strand, 42100690 - 42100776
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaacca 344  Q
    ||||||||||||||||||| |||| || |||||| ||||| |||||||||||||||||||  ||||||||| |||||||||||||||    
T  42100690 aaaatgttacatgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttggtaagttcatctcacaacca 42100776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 258 - 355
Target Start/End: Original strand, 46941055 - 46941152
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctt 355  Q
    ||||||||||||||||||| |||| || |||| | ||||| |||||||||||||||||||  ||||||||| ||||||||||||||| ||||| ||||    
T  46941055 aaaatgttacatgaacaccctttattcctacatctcattgtacaccccatgtattagggatattttggtaagttcatctcacaaccacactttatctt 46941152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 258 - 355
Target Start/End: Original strand, 54237098 - 54237195
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctt 355  Q
    ||||||||||||||||||| |||| || |||| ||||||| |||||| ||||||||||||  ||||||||| ||||||||||||||| ||||| ||||    
T  54237098 aaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcacaaccacactttatctt 54237195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 256 - 355
Target Start/End: Original strand, 27748563 - 27748662
Alignment:
Q  256 gaaaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctt 355  Q
    ||||||||||||||||||||| |||| ||||||||| ||||  |||||  ||||||||||||  ||||||||| ||||||||||||| ||||||| ||||    
T  27748563 gaaaaatgttacatgaacaccttttattcatacacctcattatacaccttatgtattagggatattttggtaagttcatctcacaacaatactttatctt 27748662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 258 - 356
Target Start/End: Complemental strand, 53273782 - 53273684
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctcttt 356  Q
    ||||||||| ||||||| |||||| || || ||| ||||| ||| |||||||||||||||  ||||||||| ||||||||||||||||||||| |||||    
T  53273782 aaaatgttatatgaacatcatttattcctatacctcattgtacatcccatgtattagggatattttggtaagttcatctcacaaccatactttatcttt 53273684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 258 - 355
Target Start/End: Complemental strand, 24688500 - 24688403
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctt 355  Q
    ||||||||||||||||||| |||| |  ||||| |||||| |||||| ||||||||||||  ||||||||| ||||||||||||||| ||||| ||||    
T  24688500 aaaatgttacatgaacaccctttatttctacactccattgtacaccctatgtattagggatattttggtaagttcatctcacaaccacactttatctt 24688403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 258 - 355
Target Start/End: Original strand, 25413683 - 25413780
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctt 355  Q
    ||||||||||||||||||| |||| || |||||||||||| |||||  ||||||||||||  |||| |||| ||||||||||||||| ||||| ||||    
T  25413683 aaaatgttacatgaacaccctttattcctacaccccattgtacaccttatgtattagggatatttttgtaagttcatctcacaaccacactttatctt 25413780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 258 - 355
Target Start/End: Original strand, 36150132 - 36150229
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctt 355  Q
    ||||||||||||||| ||| |||| ||||||||||||||  |||||| |||||| |||||  ||||||||| ||||||||||||||| ||||| ||||    
T  36150132 aaaatgttacatgaataccctttattcatacaccccattatacaccctatgtatcagggatattttggtaagttcatctcacaaccacactttatctt 36150229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 258 - 355
Target Start/End: Original strand, 40480751 - 40480848
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctt 355  Q
    ||||||||||||||||||| |||| |||||  |||||||| ||| || ||||||||||||  ||||||||| ||||||||||||||| ||||| ||||    
T  40480751 aaaatgttacatgaacaccctttattcatatgccccattgtacatcctatgtattagggatattttggtaagttcatctcacaaccacactttatctt 40480848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 258 - 355
Target Start/End: Complemental strand, 42394517 - 42394420
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctt 355  Q
    ||||||||||||||||||| |||| || ||||  |||||| |||||| ||||||||||||  ||||||||| ||||||||||||||| ||||| ||||    
T  42394517 aaaatgttacatgaacaccctttattcctacattccattgtacaccctatgtattagggatattttggtaagttcatctcacaaccacactttatctt 42394420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 254 - 355
Target Start/End: Complemental strand, 53581960 - 53581859
Alignment:
Q  254 tagaaaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctc 353  Q
    ||||||||||||||||||||||  |||| |||||||| |||||| ||| || ||||||||||||  ||||| ||| ||||||||||||||| ||||| ||    
T  53581960 tagaaaaatgttacatgaacactctttattcatacactccattgtacatcctatgtattagggatattttgataagttcatctcacaaccacactttatc 53581861  T
Q  354 tt 355  Q
    ||    
T  53581860 tt 53581859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 258 - 355
Target Start/End: Complemental strand, 54246246 - 54246149
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctt 355  Q
    ||||||||||||||||||| |||| || |||||||||||| |||||| ||||||||| ||  |||| |||| ||||||||||||||| ||||| ||||    
T  54246246 aaaatgttacatgaacaccctttattcctacaccccattgtacaccctatgtattagagatatttttgtaagttcatctcacaaccacactttatctt 54246149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 258 - 355
Target Start/End: Complemental strand, 47191123 - 47191027
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctt 355  Q
    ||||||||||||||||||| |||| || |||||| ||||| ||| |||||||||||| ||  ||||| ||| ||||||||||||||| ||||| ||||    
T  47191123 aaaatgttacatgaacaccctttattcctacacctcattgtaca-cccatgtattagagatattttgataagttcatctcacaaccacactttatctt 47191027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 298 - 360
Target Start/End: Original strand, 19148821 - 19148883
Alignment:
Q  298 cacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctttcatc 360  Q
    ||||||| ||||||||||||| |||| ||||||| ||||||||| || |||||| ||||||||    
T  19148821 cacaccctatgtattagggacattttagtaaatttatctcacaatcacactttcactttcatc 19148883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 341
Target Start/End: Complemental strand, 29558330 - 29558249
Alignment:
Q  260 aatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaa 341  Q
    ||||||| ||||||||| |||| ||||||| | ||||| |||||| || ||||||| |  | ||||||||||||||||||||    
T  29558330 aatgttatatgaacaccctttattcatacatctcattgtacaccctatatattaggaatatattggtaaattcatctcacaa 29558249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 355
Target Start/End: Original strand, 51249351 - 51249407
Alignment:
Q  299 acaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctt 355  Q
    ||||| |||| |||| |||  ||||||||||||||||||||||||| ||||||||||    
T  51249351 acacctcatgcattaaggatattttggtaaattcatctcacaaccacactttctctt 51249407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 256 - 362
Target Start/End: Complemental strand, 45819 - 45713
Alignment:
Q  256 gaaaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctt 355  Q
    ||||||||||||||||||||| ||||||||||||||| |||| ||| || |||||||| |||  ||||||||||||||||||||||||||||||||||||    
T  45819 gaaaaatgttacatgaacaccctttaatcatacaccctattgtacatcctatgtattaaggatattttggtaaattcatctcacaaccatactttctctt 45720  T
Q  356 tcatctc 362  Q
    |||||||    
T  45719 tcatctc 45713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 3e-33; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 258 - 362
Target Start/End: Original strand, 40236921 - 40237025
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctttc 357  Q
    ||||||||||||||||||| |||||||||||| || |||| |||||||||| ||||||||| ||||||||| ||||||||||||||||| ||||||||||    
T  40236921 aaaatgttacatgaacaccctttaatcatacatcctattgtacaccccatgcattagggacattttggtaatttcatctcacaaccatattttctctttc 40237020  T
Q  358 atctc 362  Q
    |||||    
T  40237021 atctc 40237025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 258 - 362
Target Start/End: Original strand, 33384872 - 33384977
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacacccc-attgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctcttt 356  Q
    ||||||||||||||||| |||||||||||||||||| |||| | || ||||| ||||||||| |||||||||||||||||||||| ||||||||||||||    
T  33384872 aaaatgttacatgaacatcatttaatcatacacccctattgtatactccatgcattagggacattttggtaaattcatctcacaaacatactttctcttt 33384971  T
Q  357 catctc 362  Q
    ||||||    
T  33384972 catctc 33384977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 258 - 362
Target Start/End: Original strand, 31513289 - 31513393
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctttc 357  Q
    ||||||||||||||||||  ||||||||||||||| |||| | |||||||| |||| |||  ||||||||||||||||||||||||||||||||||||||    
T  31513289 aaaatgttacatgaacactctttaatcatacaccctattgtataccccatgcattaaggatattttggtaaattcatctcacaaccatactttctctttc 31513388  T
Q  358 atctc 362  Q
    |||||    
T  31513389 atctc 31513393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 258 - 362
Target Start/End: Complemental strand, 31408731 - 31408627
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctttc 357  Q
    ||||||||||||||||||| ||||||||||||| | |||| ||| |||||| |||| |||  ||||||||||||||| ||||||||||||||||||||||    
T  31408731 aaaatgttacatgaacaccctttaatcatacactctattgtacatcccatgcattaaggatattttggtaaattcatttcacaaccatactttctctttc 31408632  T
Q  358 atctc 362  Q
    |||||    
T  31408631 atctc 31408627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 258 - 362
Target Start/End: Complemental strand, 27535329 - 27535225
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctttc 357  Q
    ||||||||||||||||||| ||||||||||||| | |||| |||| |||||| |||  ||| ||||||||| ||||||||||||| ||||||||||||||    
T  27535329 aaaatgttacatgaacaccctttaatcatacactctattgtacactccatgtgttaaagacattttggtaatttcatctcacaactatactttctctttc 27535230  T
Q  358 atctc 362  Q
    |||||    
T  27535229 atctc 27535225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 254 - 355
Target Start/End: Complemental strand, 4638301 - 4638200
Alignment:
Q  254 tagaaaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctc 353  Q
    ||||||||||||||||||||||| |||| |||||||| | |||| ||||||||| ||||| |||  ||||||||| ||||||||||||||||||||| ||    
T  4638301 tagaaaaatgttacatgaacaccttttattcatacactcaattgtacaccccatatattatggatattttggtaagttcatctcacaaccatactttatc 4638202  T
Q  354 tt 355  Q
    ||    
T  4638201 tt 4638200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 256 - 355
Target Start/End: Original strand, 10573749 - 10573848
Alignment:
Q  256 gaaaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctt 355  Q
    |||||||||||||| |||||| |||| ||||||| || |||| ||||||||||||||||| |  ||||||||||||||||||||||||| ||||| ||||    
T  10573749 gaaaaatgttacataaacaccctttattcatacatcctattgtacaccccatgtattaggaatattttggtaaattcatctcacaaccacactttatctt 10573848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 258 - 355
Target Start/End: Complemental strand, 24001110 - 24001013
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctt 355  Q
    ||||||||||||||||||| |||| || |||| ||||||| |||||| ||||||||||||  ||||||||| ||||||||||||||| ||||| ||||    
T  24001110 aaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcacaaccacactttatctt 24001013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 258 - 355
Target Start/End: Complemental strand, 42538529 - 42538432
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctt 355  Q
    ||||||||||||||||||| |||| || |||| ||||||| |||||| ||||||||||||  ||||||||| ||||||||||||||| ||||| ||||    
T  42538529 aaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcacaaccacactttatctt 42538432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 255 - 355
Target Start/End: Complemental strand, 43343725 - 43343625
Alignment:
Q  255 agaaaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctct 354  Q
    |||||||||||||||||||| |||||| |  ||||||| |||| |||||||||||||||||||  ||||| ||| ||||||||||||||| ||||| |||    
T  43343725 agaaaaatgttacatgaacatcatttatttctacaccctattgtacaccccatgtattagggatattttgataagttcatctcacaaccacactttatct 43343626  T
Q  355 t 355  Q
    |    
T  43343625 t 43343625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 254 - 350
Target Start/End: Original strand, 44326176 - 44326272
Alignment:
Q  254 tagaaaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatacttt 350  Q
    |||||||||||||||| |||||| |||| ||||||| ||||||| ||||| ||| |||||||||  ||||||||| ||||||||||||||| |||||    
T  44326176 tagaaaaatgttacataaacaccctttattcatacatcccattgtacacctcatatattagggatattttggtaagttcatctcacaaccacacttt 44326272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 256 - 355
Target Start/End: Complemental strand, 44417034 - 44416935
Alignment:
Q  256 gaaaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctt 355  Q
    ||||||||||||||||||| |||||| |  ||||||| |||| |||||||||||||||||||  ||||| ||| ||||||||||||||| ||||| ||||    
T  44417034 gaaaaatgttacatgaacatcatttatttctacaccctattgtacaccccatgtattagggatattttgataagttcatctcacaaccacactttatctt 44416935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 253 - 355
Target Start/End: Complemental strand, 5194334 - 5194232
Alignment:
Q  253 ttagaaaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttct 352  Q
    |||| |||||||||||||||||||||||| ||||||||| ||||| |||||| |||| ||| |||  ||||| |||||||||||||||| || |||| ||    
T  5194334 ttaggaaaatgttacatgaacaccatttattcatacacctcattgtacaccctatgttttaaggatattttgataaattcatctcacaatcacacttact 5194235  T
Q  353 ctt 355  Q
    |||    
T  5194234 ctt 5194232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 253 - 355
Target Start/End: Original strand, 35069718 - 35069820
Alignment:
Q  253 ttagaaaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttct 352  Q
    |||| ||||||||||||||||||  |||| || |||||| ||||| ||||| |||||||||||||  ||||||||| ||||||||||||||| ||||| |    
T  35069718 ttaggaaaatgttacatgaacactctttattcctacacctcattgtacacctcatgtattagggatattttggtaagttcatctcacaaccacactttat 35069817  T
Q  353 ctt 355  Q
    |||    
T  35069818 ctt 35069820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 259 - 350
Target Start/End: Complemental strand, 26898499 - 26898408
Alignment:
Q  259 aaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatacttt 350  Q
    |||||||||||||||||| |||| |||||||||| |||| |||  ||||||||||||||  ||||||||| ||||||| ||||||| |||||    
T  26898499 aaatgttacatgaacaccttttattcatacacccaattgtacattccatgtattagggatattttggtaagttcatcttacaaccacacttt 26898408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 265 - 355
Target Start/End: Complemental strand, 32029908 - 32029818
Alignment:
Q  265 tacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctt 355  Q
    ||||| |||||  |||| || |||||||||||| |||||||||||||||||||  ||||||||||||||||| ||||||| ||||| ||||    
T  32029908 tacataaacactttttattcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctaacaaccacactttatctt 32029818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 258 - 355
Target Start/End: Original strand, 5015397 - 5015494
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctt 355  Q
    ||||||||||||||||||  |||| |  ||||| |||||| ||||| |||||||||||||  ||||||||| ||||||||||||||| ||||| ||||    
T  5015397 aaaatgttacatgaacactctttatttctacactccattgtacacctcatgtattagggatattttggtaagttcatctcacaaccacactttatctt 5015494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 258 - 355
Target Start/End: Complemental strand, 5811022 - 5810925
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctt 355  Q
    |||||||||||||| |||| |||| || |||||||||||| |||||| || |||||||||  ||||| ||| ||||||||||||||| ||||| ||||    
T  5811022 aaaatgttacatgaccaccctttattcctacaccccattgtacaccctatatattagggatattttgataagttcatctcacaaccacactttatctt 5810925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 254 - 355
Target Start/End: Complemental strand, 16180458 - 16180358
Alignment:
Q  254 tagaaaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctc 353  Q
    |||||||||||||||| ||||||||||| || ||||||| |||| |||||||| ||||||   |  ||||||||||||||||||||||||| ||||| ||    
T  16180458 tagaaaaatgttacatcaacaccatttattcctacaccc-attgtacaccccacgtattataaatattttggtaaattcatctcacaaccacactttatc 16180360  T
Q  354 tt 355  Q
    ||    
T  16180359 tt 16180358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 258 - 355
Target Start/End: Original strand, 43317445 - 43317542
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctt 355  Q
    |||||||||||||||||||||||| ||||||||| ||||| ||| || |||  |||||||  ||||| |||||||||||||||| || |||| |||||    
T  43317445 aaaatgttacatgaacaccatttattcatacacctcattgtacatcctatgctttagggatattttgataaattcatctcacaatcacacttactctt 43317542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 258 - 344
Target Start/End: Original strand, 42972854 - 42972940
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaacca 344  Q
    |||||||||| |||||| | |||| || ||||| |||||| ||||| |||||||||||||  ||||||||| |||||||||||||||    
T  42972854 aaaatgttacctgaacatcctttattcctacactccattgtacacctcatgtattagggatattttggtaagttcatctcacaacca 42972940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 262 - 355
Target Start/End: Original strand, 45326026 - 45326119
Alignment:
Q  262 tgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctt 355  Q
    |||||||| |||||| |||| ||||||| | ||||| ||||||||| |||||||||  ||||||||| |||||||||||| || ||||| ||||    
T  45326026 tgttacataaacaccttttattcatacatcacattgtacaccccatatattagggatattttggtaagttcatctcacaatcacactttatctt 45326119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 258 - 317
Target Start/End: Original strand, 39998410 - 39998469
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattaggga 317  Q
    ||||||||||||||||||  |||||||||||| || |||| |||||||||||||||||||    
T  39998410 aaaatgttacatgaacacattttaatcatacatcctattgtacaccccatgtattaggga 39998469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 258 - 355
Target Start/End: Complemental strand, 24280694 - 24280597
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctt 355  Q
    |||||||||| |||||||| |||| |||||||||| |||  ||| |||||| | |||  |  |||||||||||||||||||||| || ||||||||||    
T  24280694 aaaatgttacgtgaacaccctttattcatacaccctattctacatcccatgcactagaaatattttggtaaattcatctcacaatcacactttctctt 24280597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 258 - 355
Target Start/End: Original strand, 41861676 - 41861775
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtat--tagggacgttttggtaaattcatctcacaaccatactttctctt 355  Q
    ||||||||||||||||||| |||| |||||||||| |||  |||||| ||||||  ||| ||  ||||||||| || |||||||||||| ||||| ||||    
T  41861676 aaaatgttacatgaacaccctttattcatacacccaattatacaccctatgtattatagagatattttggtaagtttatctcacaaccacactttatctt 41861775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 286 - 355
Target Start/End: Complemental strand, 38160649 - 38160580
Alignment:
Q  286 tacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctt 355  Q
    ||||| |||||| |||||||||||||||||||  |||| |||| ||||||||||||| | ||||| ||||    
T  38160649 tacactccattgtacaccccatgtattagggatattttagtaacttcatctcacaactacactttatctt 38160580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 344
Target Start/End: Original strand, 9216304 - 9216389
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaacca 344  Q
    ||||||||||||||||||| |||| || || | || |||| |||||| ||| ||||| ||  ||||||||| |||||||||||||||    
T  9216304 aaaatgttacatgaacaccctttattcctatatcctattgtacaccc-atgcattagagatattttggtaagttcatctcacaacca 9216389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 7e-31; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 258 - 362
Target Start/End: Original strand, 17208076 - 17208180
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctttc 357  Q
    |||||||||| |||||||| |||||||||||||   |||| |||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||    
T  17208076 aaaatgttacgtgaacaccctttaatcatacactttattgtacaccccatgcattaaggacattttggtaaattcatctcacaaccatactttctctttc 17208175  T
Q  358 atctc 362  Q
    |||||    
T  17208176 atctc 17208180  T

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Target: chr5; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 258 - 362
Target Start/End: Complemental strand, 32473492 - 32473388
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctttc 357  Q
    ||||||||||||||||||| ||||||||||||||  |||| ||||| |||| ||||||||  ||||||||| ||||||||||||||||||||||||||||    
T  32473492 aaaatgttacatgaacaccctttaatcatacaccttattgtacaccacatgcattagggatattttggtaatttcatctcacaaccatactttctctttc 32473393  T
Q  358 atctc 362  Q
    |||||    
T  32473392 atctc 32473388  T

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Target: chr5; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 255 - 355
Target Start/End: Original strand, 5256994 - 5257094
Alignment:
Q  255 agaaaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctct 354  Q
    ||||||||||||||| ||||||||||| ||||||| ||||||| |||||||||||||||||||  ||||||||| ||||||||||||||| ||||| |||    
T  5256994 agaaaaatgttacataaacaccatttattcatacatcccattgtacaccccatgtattagggatattttggtaatttcatctcacaaccacactttatct 5257093  T
Q  355 t 355  Q
    |    
T  5257094 t 5257094  T

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Target: chr5; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 258 - 355
Target Start/End: Original strand, 7617135 - 7617232
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctt 355  Q
    ||||||||||||||||||| |||| |||||||| |||||  |||||||||||||||||||  ||||||||| ||||||||||||||| ||||| ||||    
T  7617135 aaaatgttacatgaacaccctttattcatacactccattatacaccccatgtattagggatattttggtaagttcatctcacaaccacactttatctt 7617232  T

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Target: chr5; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 258 - 362
Target Start/End: Complemental strand, 30622816 - 30622713
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctttc 357  Q
    ||||||||||||||||| | ||||||||||||||| |||| | | |||||| |||| |||  |||||||||||| |||||||||||||||||||||||||    
T  30622816 aaaatgttacatgaacatcctttaatcatacaccctattgta-agcccatgcattaaggatattttggtaaatttatctcacaaccatactttctctttc 30622718  T
Q  358 atctc 362  Q
    |||||    
T  30622717 atctc 30622713  T

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Target: chr5; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 258 - 355
Target Start/End: Complemental strand, 2614747 - 2614650
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctt 355  Q
    ||||||||||||||||||| |||| || |||| ||||||| |||||| ||||||||||||  ||||||||| ||||||||||||||| ||||| ||||    
T  2614747 aaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcacaaccacactttatctt 2614650  T

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Target: chr5; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 258 - 355
Target Start/End: Original strand, 22512307 - 22512404
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctt 355  Q
    ||||||||||||||||||| |||| || ||||| |||||| |||| ||||||||||||||  ||||||||| ||||||||||||||| ||||| ||||    
T  22512307 aaaatgttacatgaacaccctttattcctacactccattgtacactccatgtattagggatattttggtaagttcatctcacaaccacactttatctt 22512404  T

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Target: chr5; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 258 - 355
Target Start/End: Complemental strand, 41334761 - 41334664
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctt 355  Q
    ||||||||||||||||||| |||| ||||||||| ||||  |||||| ||||||||||||  ||||||||| ||||||||||||||| ||||| ||||    
T  41334761 aaaatgttacatgaacaccctttattcatacacctcattatacaccctatgtattagggatattttggtaagttcatctcacaaccacactttatctt 41334664  T

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Target: chr5; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 258 - 355
Target Start/End: Original strand, 18033984 - 18034081
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctt 355  Q
    ||||||||||||||||||| |||| || ||||| |||||| |||||| ||||||||||||  |||| |||| ||||||||||||||| ||||| ||||    
T  18033984 aaaatgttacatgaacaccctttattcctacactccattgtacaccctatgtattagggatatttttgtaagttcatctcacaaccacactttatctt 18034081  T

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Target: chr5; HSP #10
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 258 - 328
Target Start/End: Complemental strand, 33855141 - 33855071
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaa 328  Q
    ||||||||||||||||||| |||| || |||||||||||| ||||||||||||||||| || |||||||||    
T  33855141 aaaatgttacatgaacaccctttattcctacaccccattgtacaccccatgtattaggaacattttggtaa 33855071  T

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Target: chr5; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 258 - 355
Target Start/End: Original strand, 33801471 - 33801568
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctt 355  Q
    ||||||||||||||||| | |||| |  |||||||||||| |||| ||||||||||||||  |||| |||| ||||||||||||||| ||||| ||||    
T  33801471 aaaatgttacatgaacatcctttatttctacaccccattgtacactccatgtattagggatattttagtaagttcatctcacaaccacactttatctt 33801568  T

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Target: chr5; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 258 - 355
Target Start/End: Original strand, 38470581 - 38470678
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctt 355  Q
    |||||||||||| |||||| |||| |||||||  |||||| ||||||||||||||| |||  ||||||||||||||| |||||| || ||||| ||||    
T  38470581 aaaatgttacataaacaccctttattcatacattccattgtacaccccatgtattaaggatattttggtaaattcatttcacaatcacactttatctt 38470678  T

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Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 256 - 314
Target Start/End: Complemental strand, 25915087 - 25915029
Alignment:
Q  256 gaaaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattag 314  Q
    ||||||||||||||||||||| |||| || |||||| ||||| |||||| |||||||||    
T  25915087 gaaaaatgttacatgaacaccctttattcctacacctcattgtacacccaatgtattag 25915029  T

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Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 264 - 355
Target Start/End: Complemental strand, 39122524 - 39122434
Alignment:
Q  264 ttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctt 355  Q
    ||||||||||||| |||| ||||||| |  |||  |||||| |||||||||| |  ||||||||||||||||||||||| | ||||| ||||    
T  39122524 ttacatgaacaccttttattcatacatctaattagacaccc-atgtattaggaatattttggtaaattcatctcacaactacactttatctt 39122434  T

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Target: scaffold0385 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 258 - 355
Target Start/End: Original strand, 11253 - 11350
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctt 355  Q
    ||||||| ||||||||||  |||| ||||||||||||||| ||||||||| |||||||||  ||||||||| ||||||||||||||| ||||| ||||    
T  11253 aaaatgtcacatgaacacactttattcatacaccccattgtacaccccatatattagggatattttggtaagttcatctcacaaccacactttatctt 11350  T

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Target: scaffold0119 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 258 - 355
Target Start/End: Original strand, 687 - 784
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctt 355  Q
    ||||||||||||||||||| |||| || |||||| ||||| ||||| |||||||||||||  ||||||||| ||||||||||||||| ||||| ||||    
T  687 aaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtattagggatattttggtaagttcatctcacaaccacactttatctt 784  T

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Target: scaffold0038 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 258 - 355
Target Start/End: Original strand, 112657 - 112754
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctt 355  Q
    ||||||||||||||||||| |||| || ||||  |||||| |||||| ||||||||||||  ||||||||| ||||||||||||||| ||||| ||||    
T  112657 aaaatgttacatgaacaccctttattcctacattccattgtacaccctatgtattagggatattttggtaagttcatctcacaaccacactttatctt 112754  T

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Target: scaffold0187 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 258 - 355
Target Start/End: Complemental strand, 14286 - 14189
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctt 355  Q
    ||||||||||||||||||| |||| |  |||||||||||| ||| || ||||||||||||  |||| |||| ||||||||||||||| ||||| ||||    
T  14286 aaaatgttacatgaacaccctttatttctacaccccattgtacatcctatgtattagggatatttttgtaagttcatctcacaaccacactttatctt 14189  T

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Target: scaffold0187; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 258 - 355
Target Start/End: Complemental strand, 24614 - 24517
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctt 355  Q
    ||||||||||||||||||| |||| |  |||||||||||| ||| || ||||||||||||  |||| |||| ||||||||||||||| ||||| ||||    
T  24614 aaaatgttacatgaacaccctttatttctacaccccattgtacatcctatgtattagggatatttttgtaagttcatctcacaaccacactttatctt 24517  T

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Target: scaffold0157 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 258 - 355
Target Start/End: Complemental strand, 23519 - 23422
Alignment:
Q  258 aaaatgttacatgaacaccatttaatcatacaccccattgcacaccccatgtattagggacgttttggtaaattcatctcacaaccatactttctctt 355  Q
    ||||||||| ||||||||| |||| || ||||| |||||| ||| |||||||||||| ||  ||||||||| ||||||| |||| || ||||| ||||    
T  23519 aaaatgttatatgaacaccctttattcctacactccattgtacatcccatgtattagagatattttggtaagttcatcttacaatcacactttatctt 23422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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