View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4290_low_6 (Length: 356)
Name: NF4290_low_6
Description: NF4290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4290_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 313; Significance: 1e-176; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 15201412 - 15201061
Alignment:
| Q |
1 |
catgtgtaaatttgcagtgttagaaaaaccctaataata------cacacacacaatgttaattaatttggtgccaacattgttcttacctgaggcaacc |
94 |
Q |
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| T |
15201412 |
catgtgtaaatttgcagtgttagaaaaaccctaataatatatatacacacacacaatgttaattaatttggtgccaacattgttcttacctgaggcaacc |
15201313 |
T |
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| Q |
95 |
aaaaacaaatattctgcagaaaattgatgttgaaattggaggaggagctcttttccggtggtggaagagagtggatggtagaagaaaacatagagccaaa |
194 |
Q |
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| T |
15201312 |
aaaaacaaatattctgcagaaaattgatgttgaaattggaggaggagctctttttctatggtggaagagagtggatggtagaagaaaacatagagccaaa |
15201213 |
T |
|
| Q |
195 |
aggtttgagtaaacaatgaaaatgaaaatactcattccatctttggtggctgctttcattagagtatcaccacccacttccacgaattgagctgcaatca |
294 |
Q |
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| T |
15201212 |
aggtttgagtaaacaatgaaaatgaaaatactcattccatctttggtggctgctttcattagagtatcaccacccacttccacgaattgagctgcaatca |
15201113 |
T |
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| Q |
295 |
ttgttgctgttacacttgctccttcgctcaccatttttcttttgtctctctg |
346 |
Q |
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| T |
15201112 |
ttgctgctgttacacttgctccttcgctcaccatttttcttttgtctctctg |
15201061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 74 - 332
Target Start/End: Complemental strand, 15208405 - 15208147
Alignment:
| Q |
74 |
ttgttcttacctgaggcaaccaaaaacaaatattctgcagaaaattgatgttgaaattggaggaggagctcttttccggtggtggaagagagtggatggt |
173 |
Q |
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| T |
15208405 |
ttgttcttacttgaggcaaccaagaagaagtaatctacagaaaattgatgttgaaattggaggaggagctctttttctatggtggaagagagtggatggt |
15208306 |
T |
|
| Q |
174 |
agaagaaaacatagagccaaaaggtttgagtaaacaatgaaaatgaaaatactcattccatctttggtggctgctttcattagagtatcaccacccactt |
273 |
Q |
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| T |
15208305 |
agaagaaaacatagagccaaaaggtttgaataaaaaatgaaaataaaaatactcattccatctttagtggctgatttcattagagtttcaccacccactt |
15208206 |
T |
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| Q |
274 |
ccacgaattgagctgcaatcattgttgctgttacacttgctccttcgctcaccattttt |
332 |
Q |
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| T |
15208205 |
caacgatttgagctgcaatcattgttgttgttacacttgctcctccactcgccattttt |
15208147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 105 - 334
Target Start/End: Complemental strand, 15189422 - 15189196
Alignment:
| Q |
105 |
attctgcagaaaattgatgttgaaattggaggaggagctcttttccggtggtggaagagagtggatggtagaagaaaacatagagccaaaaggtttgagt |
204 |
Q |
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| T |
15189422 |
attctgcagaaaattgacgttgaaattggaggaggagatcttttcctatggtggaagagagtggatggtagaaggaaacatagggccaaaatgtttgaat |
15189323 |
T |
|
| Q |
205 |
aaacaatgaaaatgaaaatactcattccatctttggtggctgctttcattagagtatcaccacccacttccacgaattgagctgcaatcattgttgctgt |
304 |
Q |
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||| ||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| || |||| | | |||||| ||||||| |
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| T |
15189322 |
aaaaaatgaaaataaaaatactcattccatcttttgtggctgatttcattagagtatcaccacccacttccacaaactgagttacgatcattattgctgt |
15189223 |
T |
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| Q |
305 |
tacacttgctccttcgctcaccatttttct |
334 |
Q |
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| T |
15189222 |
tacac---ctccttcagtcaccatttttct |
15189196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 81 - 335
Target Start/End: Complemental strand, 15179673 - 15179419
Alignment:
| Q |
81 |
tacctgaggcaaccaaaaacaaatattctgcagaaaattgatgttgaaattggaggaggagctcttttccggtggtggaagagagtggatggtagaagaa |
180 |
Q |
| |
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||||||||||||| || || ||| ||||| || |||||||||| |||||||| |||||| |||||||| | ||||| ||| | || |||||| ||| | |
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| T |
15179673 |
tacctgaggcaactaagaagaaacattctacataaaattgatgatgaaattgaaggaggggctctttttctgtggtagaaaaaggttaatggtaaaagga |
15179574 |
T |
|
| Q |
181 |
aacatagagccaaaaggtttgagtaaacaatgaaaatgaaaatactcattccatctttggtggctgctttcattagagtatcaccacccacttccacgaa |
280 |
Q |
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|||||||||| |||||||||||||||| | |||||| ||||||||||||||||| |||||||||||||| || ||||| | |||||||||||| | ||| |
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| T |
15179573 |
aacatagagcgaaaaggtttgagtaaaaagtgaaaacaaaaatactcattccatcattggtggctgctttgatcagagtgttaccacccacttctaggaa |
15179474 |
T |
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| Q |
281 |
ttgagctgcaatcattgttgctgttacacttgctccttcgctcaccatttttctt |
335 |
Q |
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| T |
15179473 |
ttgaactgcaaccattgttgctgttacacttgctccttcgatcaccatttttctt |
15179419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 343
Target Start/End: Complemental strand, 15199827 - 15199789
Alignment:
| Q |
305 |
tacacttgctccttcgctcaccatttttcttttgtctct |
343 |
Q |
| |
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|||||||||||||| ||||||||||||| |||||||||| |
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| T |
15199827 |
tacacttgctcctttgctcaccattttttttttgtctct |
15199789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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