View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4290_low_9 (Length: 307)

Name: NF4290_low_9
Description: NF4290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4290_low_9
NF4290_low_9
[»] chr3 (2 HSPs)
chr3 (84-253)||(53746957-53747123)
chr3 (23-58)||(29586281-29586316)
[»] chr4 (8 HSPs)
chr4 (22-86)||(1015940-1016004)
chr4 (22-85)||(47834508-47834571)
chr4 (29-84)||(618828-618883)
chr4 (22-86)||(4404216-4404280)
chr4 (22-83)||(56563895-56563956)
chr4 (22-85)||(53325250-53325313)
chr4 (22-84)||(56453905-56453967)
chr4 (23-85)||(31862316-31862378)
[»] chr6 (3 HSPs)
chr6 (22-85)||(2142378-2142441)
chr6 (23-85)||(30460999-30461061)
chr6 (29-66)||(32254121-32254158)
[»] chr8 (2 HSPs)
chr8 (22-86)||(24241501-24241565)
chr8 (29-59)||(20168051-20168081)
[»] chr5 (3 HSPs)
chr5 (22-80)||(41660038-41660096)
chr5 (23-57)||(128162-128196)
chr5 (23-73)||(10173877-10173927)
[»] chr7 (5 HSPs)
chr7 (22-85)||(35736865-35736928)
chr7 (23-83)||(47500379-47500439)
chr7 (29-59)||(44389760-44389790)
chr7 (29-85)||(48831287-48831341)
chr7 (25-57)||(41271817-41271849)
[»] scaffold0712 (1 HSPs)
scaffold0712 (22-57)||(3139-3174)
[»] scaffold0709 (1 HSPs)
scaffold0709 (22-57)||(3159-3194)
[»] chr2 (1 HSPs)
chr2 (23-85)||(2805306-2805368)
[»] chr1 (1 HSPs)
chr1 (23-87)||(5047476-5047540)


Alignment Details
Target: chr3 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 84 - 253
Target Start/End: Complemental strand, 53747123 - 53746957
Alignment:
Q  84 tcacctaaattggtgtgacaattcaactatatgcaatgcaattagtatcatttctctctagaaacgatgtttgtccaagtacattgtactacgaccatat 183  Q
    ||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53747123 tcacctaaattggtgtgacaattcaactatatgcaatgcaattac---catttctctctagaaacgatgtttgtccaagtacattgtactacgaccatat 53747027  T
Q  184 gtggcaagtgcatagtgactatcactttctcattgaacaagggaacattaacacatcattgtatgctgtc 253  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53747026 gtggcaagtgcatagtgactatcactttctcattgaacaagggaacattaacacatcattgtatgctgtc 53746957  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 23 - 58
Target Start/End: Complemental strand, 29586316 - 29586281
Alignment:
Q  23 tgtgtctttatctctctaaatggaggaaatggagag 58  Q
    |||||||||||||||||||||||| |||||||||||    
T  29586316 tgtgtctttatctctctaaatggatgaaatggagag 29586281  T

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Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 1015940 - 1016004
Alignment:
Q  22 atgtgtctttatctctctaaatggaggaaatggagagggaaataaattgagaagattttgactca 86  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  1015940 atgtgtctttatctctctaaatggaggaaatggagagggaaataaatggagaagattttgactca 1016004  T

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Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 22 - 85
Target Start/End: Complemental strand, 47834571 - 47834508
Alignment:
Q  22 atgtgtctttatctctctaaatggaggaaatggagagggaaataaattgagaagattttgactc 85  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  47834571 atgtgtctttatctttctaaatggaggaaatggagagggaaataaatggagaagattttgactc 47834508  T

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Target: chr4; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 29 - 84
Target Start/End: Complemental strand, 618883 - 618828
Alignment:
Q  29 tttatctctctaaatggaggaaatggagagggaaataaattgagaagattttgact 84  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  618883 tttatctctctaaatggaggaaatggagagggaaataaatggagaagattttgact 618828  T

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Target: chr4; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 4404280 - 4404216
Alignment:
Q  22 atgtgtctttatctctctaaatggaggaaatggagagggaaataaattgagaagattttgactca 86  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| |||| ||| ||||||||    
T  4404280 atgtgtctttatctttctaaatggaggaaatggagagggaaataaatggagaggatcttgactca 4404216  T

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Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 22 - 83
Target Start/End: Complemental strand, 56563956 - 56563895
Alignment:
Q  22 atgtgtctttatctctctaaatggaggaaatggagagggaaataaattgagaagattttgac 83  Q
    |||||||||||||||||||||||||| |||| ||||||||||||||| |||| ||| |||||    
T  56563956 atgtgtctttatctctctaaatggagaaaatagagagggaaataaatggagaggatcttgac 56563895  T

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Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 85
Target Start/End: Complemental strand, 53325313 - 53325250
Alignment:
Q  22 atgtgtctttatctctctaaatggaggaaatggagagggaaataaattgagaagattttgactc 85  Q
    |||||||||||||||| ||||||||||||||||||||| |||| ||| || | |||||||||||    
T  53325313 atgtgtctttatctctttaaatggaggaaatggagaggaaaatgaatggaaatgattttgactc 53325250  T

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Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 84
Target Start/End: Original strand, 56453905 - 56453967
Alignment:
Q  22 atgtgtctttatctctctaaatggaggaaatggagagggaaataaattgagaagattttgact 84  Q
    ||||||||||||||||||||||  || |||||||||||||||||||| |||| ||| ||||||    
T  56453905 atgtgtctttatctctctaaatatagaaaatggagagggaaataaatggagaggatcttgact 56453967  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 85
Target Start/End: Original strand, 31862316 - 31862378
Alignment:
Q  23 tgtgtctttatctctctaaatggaggaaatggagagggaaataaattgagaagattttgactc 85  Q
    ||||||| |||||||| ||||||  ||||| |||| ||| ||||||||||| |||||||||||    
T  31862316 tgtgtctatatctctccaaatggtagaaatagagaaggatataaattgagaggattttgactc 31862378  T

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Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 22 - 85
Target Start/End: Original strand, 2142378 - 2142441
Alignment:
Q  22 atgtgtctttatctctctaaatggaggaaatggagagggaaataaattgagaagattttgactc 85  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  2142378 atgtgtctttatctctctaaatggaggaaatggagagggaaataaatggagaagattttgactc 2142441  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 85
Target Start/End: Original strand, 30460999 - 30461061
Alignment:
Q  23 tgtgtctttatctctctaaatggaggaaatggagagggaaataaattgagaagattttgactc 85  Q
    |||||||||||| |||||||||||||||||||||| |||||||||| |||| ||| |||||||    
T  30460999 tgtgtctttatcactctaaatggaggaaatggagaaggaaataaatggagatgatcttgactc 30461061  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 66
Target Start/End: Original strand, 32254121 - 32254158
Alignment:
Q  29 tttatctctctaaatggaggaaatggagagggaaataa 66  Q
    ||||||||||||||| |||||||||||| |||||||||    
T  32254121 tttatctctctaaattgaggaaatggagtgggaaataa 32254158  T

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Target: chr8 (Bit Score: 57; Significance: 8e-24; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 24241565 - 24241501
Alignment:
Q  22 atgtgtctttatctctctaaatggaggaaatggagagggaaataaattgagaagattttgactca 86  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  24241565 atgtgtctttatctctctaaatggaggaaatggagagggaaataaatggagaagatcttgactca 24241501  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 59
Target Start/End: Complemental strand, 20168081 - 20168051
Alignment:
Q  29 tttatctctctaaatggaggaaatggagagg 59  Q
    |||||||||||||||||||||||||||||||    
T  20168081 tttatctctctaaatggaggaaatggagagg 20168051  T

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Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 22 - 80
Target Start/End: Complemental strand, 41660096 - 41660038
Alignment:
Q  22 atgtgtctttatctctctaaatggaggaaatggagagggaaataaattgagaagatttt 80  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  41660096 atgtgtctttatctctctaaatggaggaaatggagagggaaataaatggagaagatttt 41660038  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 57
Target Start/End: Complemental strand, 128196 - 128162
Alignment:
Q  23 tgtgtctttatctctctaaatggaggaaatggaga 57  Q
    ||||| |||||||||||||||||||||||||||||    
T  128196 tgtgtttttatctctctaaatggaggaaatggaga 128162  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 73
Target Start/End: Complemental strand, 10173927 - 10173877
Alignment:
Q  23 tgtgtctttatctctctaaatggaggaaatggagagggaaataaattgaga 73  Q
    |||||||||||||||| ||||| |||||||||||| ||| |||||| ||||    
T  10173927 tgtgtctttatctctccaaatgaaggaaatggagaaggacataaatggaga 10173877  T

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Target: chr7 (Bit Score: 52; Significance: 8e-21; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 22 - 85
Target Start/End: Complemental strand, 35736928 - 35736865
Alignment:
Q  22 atgtgtctttatctctctaaatggaggaaatggagagggaaataaattgagaagattttgactc 85  Q
    |||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  35736928 atgtgtctttatctttctaaatggaggaaatagagagggaaataaatggagaagattttgactc 35736865  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 83
Target Start/End: Original strand, 47500379 - 47500439
Alignment:
Q  23 tgtgtctttatctctctaaatggaggaaatggagagggaaataaattgagaagattttgac 83  Q
    ||||||| |||||||||||||||  |||||||||| ||| |||||| |||| |||||||||    
T  47500379 tgtgtctatatctctctaaatggtagaaatggagaaggacataaatggagaggattttgac 47500439  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 59
Target Start/End: Complemental strand, 44389790 - 44389760
Alignment:
Q  29 tttatctctctaaatggaggaaatggagagg 59  Q
    |||||||||||||||||||||||||||||||    
T  44389790 tttatctctctaaatggaggaaatggagagg 44389760  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 85
Target Start/End: Original strand, 48831287 - 48831341
Alignment:
Q  29 tttatctctctaaatggaggaaatggagagggaaataaattgagaagattttgactc 85  Q
    ||||||| |||||||||||||||||||||  ||||||||| |||| ||| |||||||    
T  48831287 tttatctttctaaatggaggaaatggaga--gaaataaatggagaggatcttgactc 48831341  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 57
Target Start/End: Complemental strand, 41271849 - 41271817
Alignment:
Q  25 tgtctttatctctctaaatggaggaaatggaga 57  Q
    |||||||||||||||||||||| ||||||||||    
T  41271849 tgtctttatctctctaaatggaagaaatggaga 41271817  T

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Target: scaffold0712 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0712
Description:

Target: scaffold0712; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 57
Target Start/End: Original strand, 3139 - 3174
Alignment:
Q  22 atgtgtctttatctctctaaatggaggaaatggaga 57  Q
    ||||||||||||||||||||||||||||||||||||    
T  3139 atgtgtctttatctctctaaatggaggaaatggaga 3174  T

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Target: scaffold0709 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0709
Description:

Target: scaffold0709; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 57
Target Start/End: Original strand, 3159 - 3194
Alignment:
Q  22 atgtgtctttatctctctaaatggaggaaatggaga 57  Q
    ||||||||||||||||||||||||||||||||||||    
T  3159 atgtgtctttatctctctaaatggaggaaatggaga 3194  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 85
Target Start/End: Original strand, 2805306 - 2805368
Alignment:
Q  23 tgtgtctttatctctctaaatggaggaaatggagagggaaataaattgagaagattttgactc 85  Q
    ||||||||||| ||| |||||||| |||||||||||   ||||||| ||||||||||||||||    
T  2805306 tgtgtctttatttctttaaatggaagaaatggagagactaataaatggagaagattttgactc 2805368  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 87
Target Start/End: Original strand, 5047476 - 5047540
Alignment:
Q  23 tgtgtctttatctctctaaatggaggaaatggagagggaaataaattgagaagattttgactcac 87  Q
    |||| ||||||||||||||||||| ||||||||||  | ||||||| |||| ||| || ||||||    
T  5047476 tgtgcctttatctctctaaatggaagaaatggagatagtaataaatggagaggatcttaactcac 5047540  T

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