View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4291-Insertion-11 (Length: 116)

Name: NF4291-Insertion-11
Description: NF4291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4291-Insertion-11
NF4291-Insertion-11
[»] chr1 (16 HSPs)
chr1 (1-112)||(3349277-3349388)
chr1 (3-112)||(3340405-3340514)
chr1 (3-112)||(2948492-2948601)
chr1 (3-112)||(9818934-9819043)
chr1 (37-94)||(3378665-3378722)
chr1 (48-107)||(3361660-3361719)
chr1 (3-103)||(4323147-4323247)
chr1 (36-107)||(2010479-2010550)
chr1 (48-107)||(3372632-3372691)
chr1 (44-107)||(6601788-6601851)
chr1 (60-107)||(2006414-2006461)
chr1 (60-107)||(2019716-2019763)
chr1 (45-107)||(3218549-3218611)
chr1 (38-103)||(4335037-4335102)
chr1 (44-107)||(6592536-6592599)
chr1 (60-107)||(2011913-2011960)
[»] chr5 (1 HSPs)
chr5 (35-110)||(17969790-17969865)
[»] chr2 (3 HSPs)
chr2 (36-103)||(20952928-20952995)
chr2 (37-107)||(20923408-20923478)
chr2 (39-107)||(39273982-39274050)
[»] chr4 (1 HSPs)
chr4 (48-93)||(21237477-21237522)


Alignment Details
Target: chr1 (Bit Score: 108; Significance: 1e-54; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 108; E-Value: 1e-54
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 3349277 - 3349388
Alignment:
Q  1 ctatgtgtatctactgaaacttccctaaaacctacagttattgagagcaagtttttgagaattattgatcatgtacttttacttcattctgggctaatca 100  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3349277 ctatgtgtatctactgaaacttccctaaaaccttcagttattgagagcaagtttttgagaattattgatcatgtacttttacttcattctgggctaatca 3349376  T
Q  101 acaagtttgagg 112  Q
    ||||||||||||    
T  3349377 acaagtttgagg 3349388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 78; E-Value: 8e-37
Query Start/End: Original strand, 3 - 112
Target Start/End: Original strand, 3340405 - 3340514
Alignment:
Q  3 atgtgtatctactgaaacttccctaaaacctacagttattgagagcaagtttttgagaattattgatcatgtacttttacttcattctgggctaatcaac 102  Q
    ||||||||||||||||||||||  | | ||| |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |||||||    
T  3340405 atgtgtatctactgaaacttccaaacacccttcagttattgagagcaagtttttaagaattgttgatcatgtacttttacttcattctgggccaatcaac 3340504  T
Q  103 aagtttgagg 112  Q
    ||||||||||    
T  3340505 aagtttgagg 3340514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 74; E-Value: 2e-34
Query Start/End: Original strand, 3 - 112
Target Start/End: Complemental strand, 2948601 - 2948492
Alignment:
Q  3 atgtgtatctactgaaacttccctaaaacctacagttattgagagcaagtttttgagaattattgatcatgtacttttacttcattctgggctaatcaac 102  Q
    |||||||||||||| || ||||  | | ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  2948601 atgtgtatctactgcaatttccaaagacccttcagttattgagagcaagtttttgagaattgttgatcatgtacttttacttcattctgggccaatcaac 2948502  T
Q  103 aagtttgagg 112  Q
    ||||||||||    
T  2948501 aagtttgagg 2948492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 7e-25
Query Start/End: Original strand, 3 - 112
Target Start/End: Complemental strand, 9819043 - 9818934
Alignment:
Q  3 atgtgtatctactgaaacttccctaaaacctacagttattgagagcaagtttttgagaattattgatcatgtacttttacttcattctgggctaatcaac 102  Q
    |||||||||||| | ||| |||  ||| ||| | ||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||    
T  9819043 atgtgtatctacggcaacctccgaaaacccttcggttgttgagagaaagtttttgagaattattgatcatgtacttttacttcattccgggccaatcaac 9818944  T
Q  103 aagtttgagg 112  Q
    ||| ||||||    
T  9818943 aagattgagg 9818934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 4e-20
Query Start/End: Original strand, 37 - 94
Target Start/End: Original strand, 3378665 - 3378722
Alignment:
Q  37 gttattgagagcaagtttttgagaattattgatcatgtacttttacttcattctgggc 94  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  3378665 gttatcgagagcaagtttttgagaattatcgatcatgtacttttacttcattctgggc 3378722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 7e-19
Query Start/End: Original strand, 48 - 107
Target Start/End: Original strand, 3361660 - 3361719
Alignment:
Q  48 caagtttttgagaattattgatcatgtacttttacttcattctgggctaatcaacaagtt 107  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||    
T  3361660 caagtttttgagaattgttgatcatgtacttttacttcattatgggccaatcaacaagtt 3361719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 3 - 103
Target Start/End: Complemental strand, 4323247 - 4323147
Alignment:
Q  3 atgtgtatctactgaaacttccctaaaacctacagttattgagagcaagtttttgagaattattgatcatgtacttttacttcattctgggctaatcaac 102  Q
    |||||| ||| ||||| |||||| | | |||  ||||||||||  |||||||| || |||  |||||||||||||||||||||||||||||| |||||||    
T  4323247 atgtgtgtctgctgaagcttcccaagaccctttagttattgagcccaagttttcgaaaatggttgatcatgtacttttacttcattctgggccaatcaac 4323148  T
Q  103 a 103  Q
    |    
T  4323147 a 4323147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.00000000000004
Query Start/End: Original strand, 36 - 107
Target Start/End: Original strand, 2010479 - 2010550
Alignment:
Q  36 agttattgagagcaagtttttgagaattattgatcatgtacttttacttcattctgggctaatcaacaagtt 107  Q
    |||||| ||||| ||| |||||  ||||||||||||||||||||||||| |||| |||| ||||||||||||    
T  2010479 agttatcgagagaaagcttttggcaattattgatcatgtacttttactttattccgggccaatcaacaagtt 2010550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.00000000000004
Query Start/End: Original strand, 48 - 107
Target Start/End: Original strand, 3372632 - 3372691
Alignment:
Q  48 caagtttttgagaattattgatcatgtacttttacttcattctgggctaatcaacaagtt 107  Q
    |||||||||||||||| ||||||||||||||||||  |||||||| | ||||||||||||    
T  3372632 caagtttttgagaattgttgatcatgtacttttacaacattctggtccaatcaacaagtt 3372691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.00000000000004
Query Start/End: Original strand, 44 - 107
Target Start/End: Complemental strand, 6601851 - 6601788
Alignment:
Q  44 agagcaagtttttgagaattattgatcatgtacttttacttcattctgggctaatcaacaagtt 107  Q
    |||||||  ||| ||||||||||||||||||||||||||| |||||||||| |||||| |||||    
T  6601851 agagcaaactttcgagaattattgatcatgtacttttactccattctgggccaatcaaaaagtt 6601788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.000000000009
Query Start/End: Original strand, 60 - 107
Target Start/End: Original strand, 2006414 - 2006461
Alignment:
Q  60 aattattgatcatgtacttttacttcattctgggctaatcaacaagtt 107  Q
    |||||||||||| |||||||||||| ||||||||| ||||||||||||    
T  2006414 aattattgatcaggtacttttactttattctgggccaatcaacaagtt 2006461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.000000000009
Query Start/End: Original strand, 60 - 107
Target Start/End: Original strand, 2019716 - 2019763
Alignment:
Q  60 aattattgatcatgtacttttacttcattctgggctaatcaacaagtt 107  Q
    ||||||||||||||||||||||||| |||| |||| ||||||||||||    
T  2019716 aattattgatcatgtacttttactttattccgggccaatcaacaagtt 2019763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 45 - 107
Target Start/End: Complemental strand, 3218611 - 3218549
Alignment:
Q  45 gagcaagtttttgagaattattgatcatgtacttttacttcattctgggctaatcaacaagtt 107  Q
    ||||||| | ||||||||| |||||||||||||| ||||||||||||| |  |||||||||||    
T  3218611 gagcaagctgttgagaattgttgatcatgtacttctacttcattctggaccgatcaacaagtt 3218549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 103
Target Start/End: Complemental strand, 4335102 - 4335037
Alignment:
Q  38 ttattgagagcaagtttttgagaattattgatcatgtacttttacttcattctgggctaatcaaca 103  Q
    ||||||| | ||||||||||  |||| ||||||||||||||||| |||||||||| | ||||||||    
T  4335102 ttattgacaacaagtttttgcaaattgttgatcatgtacttttagttcattctggaccaatcaaca 4335037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 107
Target Start/End: Complemental strand, 6592599 - 6592536
Alignment:
Q  44 agagcaagtttttgagaattattgatcatgtacttttacttcattctgggctaatcaacaagtt 107  Q
    |||||||| |||  |||||||||||||||||||||||||| | |||||| | |||||| |||||    
T  6592599 agagcaagctttcaagaattattgatcatgtacttttactccgttctggaccaatcaaaaagtt 6592536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 107
Target Start/End: Original strand, 2011913 - 2011960
Alignment:
Q  60 aattattgatcatgtacttttacttcattctgggctaatcaacaagtt 107  Q
    |||||| || ||||||||||||||| ||| ||||| ||||||||||||    
T  2011913 aattatcgaccatgtacttttactttattatgggccaatcaacaagtt 2011960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 1e-23; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 35 - 110
Target Start/End: Original strand, 17969790 - 17969865
Alignment:
Q  35 cagttattgagagcaagtttttgagaattattgatcatgtacttttacttcattctgggctaatcaacaagtttga 110  Q
    ||||||| ||| |||||||||||||||| |||||||||||||||||||||||||| |||| |||||||||||||||    
T  17969790 cagttatcgagggcaagtttttgagaatcattgatcatgtacttttacttcattcagggccaatcaacaagtttga 17969865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 7e-19; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 7e-19
Query Start/End: Original strand, 36 - 103
Target Start/End: Original strand, 20952928 - 20952995
Alignment:
Q  36 agttattgagagcaagtttttgagaattattgatcatgtacttttacttcattctgggctaatcaaca 103  Q
    |||||||||||| ||||| |||| |||| |||||||||||||||||||||||||||||| ||||||||    
T  20952928 agttattgagaggaagttattgaaaattgttgatcatgtacttttacttcattctgggccaatcaaca 20952995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 37 - 107
Target Start/End: Original strand, 20923408 - 20923478
Alignment:
Q  37 gttattgagagcaagtttttgagaattattgatcatgtacttttacttcattctgggctaatcaacaagtt 107  Q
    ||||| |||| ||||||| |||| | | |||| ||||||||||||||||||||||||| ||||||||||||    
T  20923408 gttatcgagaacaagtttgtgaggactgttgaccatgtacttttacttcattctgggccaatcaacaagtt 20923478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 107
Target Start/End: Original strand, 39273982 - 39274050
Alignment:
Q  39 tattgagagcaagtttttgagaattattgatcatgtacttttacttcattctgggctaatcaacaagtt 107  Q
    |||||||| |||| |||||| |||| |||||||||||||||||||||| ||||| |  |||||||||||    
T  39273982 tattgagaacaagcttttgaaaattgttgatcatgtacttttacttcactctggacctatcaacaagtt 39274050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.0000000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 48 - 93
Target Start/End: Original strand, 21237477 - 21237522
Alignment:
Q  48 caagtttttgagaattattgatcatgtacttttacttcattctggg 93  Q
    |||||||||||||||| |||||||||||||| ||||||||||||||    
T  21237477 caagtttttgagaattgttgatcatgtacttctacttcattctggg 21237522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University