View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4291-Insertion-13 (Length: 53)

Name: NF4291-Insertion-13
Description: NF4291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4291-Insertion-13
NF4291-Insertion-13
[»] chr5 (13 HSPs)
chr5 (6-53)||(30061058-30061104)
chr5 (5-53)||(29872859-29872906)
chr5 (5-53)||(30400759-30400806)
chr5 (5-53)||(30750331-30750378)
chr5 (6-53)||(30712802-30712848)
chr5 (20-53)||(17417967-17418000)
chr5 (20-53)||(30207221-30207254)
chr5 (20-53)||(30337899-30337932)
chr5 (20-53)||(30436512-30436545)
chr5 (20-53)||(30484100-30484133)
chr5 (20-53)||(30676662-30676695)
chr5 (21-53)||(29854011-29854043)
chr5 (5-53)||(30241755-30241802)
[»] chr7 (1 HSPs)
chr7 (21-53)||(26708032-26708064)


Alignment Details
Target: chr5 (Bit Score: 40; Significance: 0.00000000000001; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000001
Query Start/End: Original strand, 6 - 53
Target Start/End: Original strand, 30061058 - 30061104
Alignment:
Q  6 gttgcaacaacttacatcacgggtggacactaaaatggaactaccttt 53  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  30061058 gttgcaacaactt-catcacgggtggacactaaaatggaactaccttt 30061104  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.0000000000009
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 29872859 - 29872906
Alignment:
Q  5 tgttgcaacaacttacatcacgggtggacactaaaatggaactaccttt 53  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||||    
T  29872859 tgttgcaacaacttt-atcacgggtggacactaaaatggaactaccttt 29872906  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.0000000000009
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 30400759 - 30400806
Alignment:
Q  5 tgttgcaacaacttacatcacgggtggacactaaaatggaactaccttt 53  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||||    
T  30400759 tgttgcaacaacttt-atcacgggtggacactaaaatggaactaccttt 30400806  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.0000000000009
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 30750331 - 30750378
Alignment:
Q  5 tgttgcaacaacttacatcacgggtggacactaaaatggaactaccttt 53  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  30750331 tgttgcaacaactt-catcacgggtggacaataaaatggaactaccttt 30750378  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.0000000008
Query Start/End: Original strand, 6 - 53
Target Start/End: Complemental strand, 30712848 - 30712802
Alignment:
Q  6 gttgcaacaacttacatcacgggtggacactaaaatggaactaccttt 53  Q
    ||||||||||| | ||||||||||||||| ||||||||||||||||||    
T  30712848 gttgcaacaacct-catcacgggtggacaataaaatggaactaccttt 30712802  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 53
Target Start/End: Complemental strand, 17418000 - 17417967
Alignment:
Q  20 catcacgggtggacactaaaatggaactaccttt 53  Q
    ||||||| ||||||||||||||||||||||||||    
T  17418000 catcacgagtggacactaaaatggaactaccttt 17417967  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 53
Target Start/End: Original strand, 30207221 - 30207254
Alignment:
Q  20 catcacgggtggacactaaaatggaactaccttt 53  Q
    ||||||| ||||||||||||||||||||||||||    
T  30207221 catcacgagtggacactaaaatggaactaccttt 30207254  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 53
Target Start/End: Complemental strand, 30337932 - 30337899
Alignment:
Q  20 catcacgggtggacactaaaatggaactaccttt 53  Q
    ||||||| ||||||||||||||||||||||||||    
T  30337932 catcacgagtggacactaaaatggaactaccttt 30337899  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 53
Target Start/End: Original strand, 30436512 - 30436545
Alignment:
Q  20 catcacgggtggacactaaaatggaactaccttt 53  Q
    ||||||| ||||||||||||||||||||||||||    
T  30436512 catcacgagtggacactaaaatggaactaccttt 30436545  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 53
Target Start/End: Original strand, 30484100 - 30484133
Alignment:
Q  20 catcacgggtggacactaaaatggaactaccttt 53  Q
    ||||||| ||||||||||||||||||||||||||    
T  30484100 catcacgagtggacactaaaatggaactaccttt 30484133  T

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Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 53
Target Start/End: Complemental strand, 30676695 - 30676662
Alignment:
Q  20 catcacgggtggacactaaaatggaactaccttt 53  Q
    ||||||| ||||||||||||||||||||||||||    
T  30676695 catcacgagtggacactaaaatggaactaccttt 30676662  T

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Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.00000005
Query Start/End: Original strand, 21 - 53
Target Start/End: Original strand, 29854011 - 29854043
Alignment:
Q  21 atcacgggtggacactaaaatggaactaccttt 53  Q
    |||||| ||||||||||||||||||||||||||    
T  29854011 atcacgagtggacactaaaatggaactaccttt 29854043  T

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Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.00000005
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 30241802 - 30241755
Alignment:
Q  5 tgttgcaacaacttacatcacgggtggacactaaaatggaactaccttt 53  Q
    |||||||||||| | ||||||| ||||| ||||||||||||||||||||    
T  30241802 tgttgcaacaacct-catcacgagtggatactaaaatggaactaccttt 30241755  T

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Target: chr7 (Bit Score: 29; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.00000005
Query Start/End: Original strand, 21 - 53
Target Start/End: Original strand, 26708032 - 26708064
Alignment:
Q  21 atcacgggtggacactaaaatggaactaccttt 53  Q
    |||||| ||||||||||||||||||||||||||    
T  26708032 atcacgagtggacactaaaatggaactaccttt 26708064  T

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