View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4291-Insertion-19 (Length: 248)
Name: NF4291-Insertion-19
Description: NF4291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4291-Insertion-19 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 31191993 - 31192242
Alignment:
| Q |
1 |
gttacgaagtccttcttaacacttgatgtaaattcatgttctttggatattaattagcgcatttgtaatatcctattctaaagaatactcaaagaaactt |
100 |
Q |
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| T |
31191993 |
gttacgaagtccttcttaacacttgatgtaaattcatgttctttggatattaattagcgcatttgtaatatcctattctaaagaatactcaaagaaactt |
31192092 |
T |
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| Q |
101 |
cttaaaa-ataacacatatcagaatcaagcaaatctctatgttcaattaagtttgctatcgttatagcattaacttaagaagaatttggtgactttactt |
199 |
Q |
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| T |
31192093 |
cttaaaaaataacacatatcagaatcgagcaaatctctatgttcaattaagtttgttatcgttatagcattaatttaagaagaatttggtgactttactt |
31192192 |
T |
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| Q |
200 |
aacaatctccagttccacatttatcatgatg-aaaactgatttgaattaa |
248 |
Q |
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| T |
31192193 |
aacaatctccagttccacatttatcatgatgaaaaactgattagaattaa |
31192242 |
T |
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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 62 - 153
Target Start/End: Original strand, 16174087 - 16174179
Alignment:
| Q |
62 |
tttgtaatatcctattctaaagaatactcaaagaaacttcttaaaaat-aacacatatcagaatcaagcaaatctctatgttcaattaagttt |
153 |
Q |
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| T |
16174087 |
tttgtaatatcatattctaaagaacactcaaagaaacttgttagaaatcaacacatatcataatcattttgatctttatgttcaattaagttt |
16174179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 180
Target Start/End: Original strand, 34483427 - 34483546
Alignment:
| Q |
62 |
tttgtaatatcctattctaaagaatactcaaagaaacttctta-aaaataacacatatcagaatcaagcaaatctctatgttcaattaagtttgctatcg |
160 |
Q |
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| T |
34483427 |
tttgtaatatcctgtttcaaagaacactcaaagaaacttgttagaaaataacatatattagaatcattttcatgtctatgttcaattaagtttgttgtca |
34483526 |
T |
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| Q |
161 |
ttatagcattaacttaagaa |
180 |
Q |
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| T |
34483527 |
ttaaaacatcaacttaagaa |
34483546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 100
Target Start/End: Complemental strand, 10916079 - 10916039
Alignment:
| Q |
60 |
catttgtaatatcctattctaaagaatactcaaagaaactt |
100 |
Q |
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| T |
10916079 |
catttgtaatatcctgttctaaataacactcaaagaaactt |
10916039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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