View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4291-Insertion-32 (Length: 134)
Name: NF4291-Insertion-32
Description: NF4291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4291-Insertion-32 |
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Alignment Details
Target: chr8 (Bit Score: 118; Significance: 1e-60; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 1e-60
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 26018174 - 26018303
Alignment:
| Q |
1 |
caaatacacttgtaaaagaaaccacagtctgttatagggcccttggcacttataggataagtatttgtaatataaatgcttctgtataacttatttttat |
100 |
Q |
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| T |
26018174 |
caaatacacttgtaaaagaaaccacagtctgttatagggcccttgccacttataggataagtgtttataatataaatgcttctgtataacttatttttat |
26018273 |
T |
|
| Q |
101 |
gataaaagataaaataaactaaaattatct |
130 |
Q |
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| T |
26018274 |
gataaaagataaaataaactaaaattatct |
26018303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 49 - 118
Target Start/End: Original strand, 29699162 - 29699231
Alignment:
| Q |
49 |
cttataggataagtatttgtaatataaatgcttctgtataacttatttttatgataaaagataaaataaa |
118 |
Q |
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| T |
29699162 |
cttatagcataaatatttatcatataaatgcttatgtacaagttatttctataacaaaagataaaataaa |
29699231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 116
Target Start/End: Complemental strand, 41336784 - 41336740
Alignment:
| Q |
72 |
ataaatgcttctgtataacttatttttatgataaaagataaaata |
116 |
Q |
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| T |
41336784 |
ataaatgcttatgtataaatcatttttatgacaaaagataaaata |
41336740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 85 - 118
Target Start/End: Complemental strand, 28660213 - 28660180
Alignment:
| Q |
85 |
tataacttatttttatgataaaagataaaataaa |
118 |
Q |
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| T |
28660213 |
tataaattatttttatgataaaagataaaataaa |
28660180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 118
Target Start/End: Complemental strand, 29574742 - 29574694
Alignment:
| Q |
70 |
atataaatgcttctgtataacttatttttatgataaaagataaaataaa |
118 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||| ||||||| ||||||| |
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|
| T |
29574742 |
atataaatgcttatgtataagctatttttatgacaaaagatgaaataaa |
29574694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 83 - 118
Target Start/End: Complemental strand, 48157248 - 48157213
Alignment:
| Q |
83 |
tgtataacttatttttatgataaaagataaaataaa |
118 |
Q |
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|
| T |
48157248 |
tgtataacttatttctataataaaagataaaataaa |
48157213 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 126
Target Start/End: Original strand, 32703067 - 32703123
Alignment:
| Q |
70 |
atataaatgcttctgtataacttatttttatgataaaagataaaataaactaaaatt |
126 |
Q |
| |
|
||||||||| || ||||||| ||||| ||| ||||||||||||||||||| ||||| |
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|
| T |
32703067 |
atataaatgtttatgtataagctatttctattataaaagataaaataaactcaaatt |
32703123 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 83 - 118
Target Start/End: Original strand, 48397588 - 48397623
Alignment:
| Q |
83 |
tgtataacttatttttatgataaaagataaaataaa |
118 |
Q |
| |
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||||||| |||||||||| ||||||||||||||||| |
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|
| T |
48397588 |
tgtataagttatttttataataaaagataaaataaa |
48397623 |
T |
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