View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4291-Insertion-34 (Length: 264)
Name: NF4291-Insertion-34
Description: NF4291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4291-Insertion-34 |
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Alignment Details
Target: chr4 (Bit Score: 146; Significance: 5e-77; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 15995420 - 15995267
Alignment:
| Q |
1 |
cttttaccgtaaaatttcacaaagataattttgtcttaaggtgctcagtggaaggagaagtcgttttaaaaataggctcacggcaaaaccattataatta |
100 |
Q |
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| T |
15995420 |
cttttactgtaaaatttcacagagataattttgtcttaaggtgctcagtggaaggagaagtcgttttaaaaataggctcacggcaaaaccattataatta |
15995321 |
T |
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| Q |
101 |
tgtccactgcccacaaacacttccttggtgttttaatctcatcatcgcaccaat |
154 |
Q |
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| T |
15995320 |
tgtccactgcccacaaacacttccttggtgttttaatctcatcatcgcaccaat |
15995267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 41 - 154
Target Start/End: Original strand, 16517929 - 16518042
Alignment:
| Q |
41 |
gtgctcagtggaaggagaagtcgttttaaaaataggctcacggcaaaaccattataattatgtccactgcccacaaacacttccttggtgttttaatctc |
140 |
Q |
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| T |
16517929 |
gtgctcagtggaaggagaagtcgttttaaaaataagctcacggcaaaacctttacgattttgtccactgcccataaacacttccttggtgtttttatctc |
16518028 |
T |
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| Q |
141 |
atcatcgcaccaat |
154 |
Q |
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| T |
16518029 |
atcatagcaccaat |
16518042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 234 - 264
Target Start/End: Complemental strand, 15995199 - 15995169
Alignment:
| Q |
234 |
agcaataatggcctcagtgtgtgtaacattc |
264 |
Q |
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| T |
15995199 |
agcaataatggcctcagtgtgtgtaacattc |
15995169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 40 - 154
Target Start/End: Original strand, 29539604 - 29539718
Alignment:
| Q |
40 |
ggtgctcagtggaaggagaagtcgttttaaaaataggctcacggcaaaaccattataattatgtccactgcccacaaacacttccttggtgttttaatct |
139 |
Q |
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||||||||||||||||||||||||||||||||| | ||||||||||||||| ||| ||| ||||||||||||| |||||||||||||||||||| |||| |
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| T |
29539604 |
ggtgctcagtggaaggagaagtcgttttaaaaaaaagctcacggcaaaacctttacgattttgtccactgcccataaacacttccttggtgtttttatct |
29539703 |
T |
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| Q |
140 |
catcatcgcaccaat |
154 |
Q |
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|||||| |||||||| |
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| T |
29539704 |
catcatagcaccaat |
29539718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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