View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4291-Insertion-37 (Length: 278)
Name: NF4291-Insertion-37
Description: NF4291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4291-Insertion-37 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 7 - 278
Target Start/End: Complemental strand, 46734817 - 46734545
Alignment:
| Q |
7 |
cagcgtaactaaataggaaattaacttgttatatagctttaaattgcaacctgaagccgcaatgtaaagattatataggcctttacaactgcaattacgg |
106 |
Q |
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| T |
46734817 |
cagcgtaactaaataggaaattaacttgttatatagctttaaattgcaacctgaagccgcaatgtaaagattatataggcctttacaactgcaattacgg |
46734718 |
T |
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| Q |
107 |
tcgcattggccgcatttatttgtcggtgtatgcaaaattaatgattgcaacataatgtgacaatggttgcaatttaaaacctagattcgatgctgaaata |
206 |
Q |
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| T |
46734717 |
tcacattggccacatttatttgacggtgtatgcaatattaatgattgcaacataatgcgacaacggttgcaatttaaaacctagattcgatgctgaaaca |
46734618 |
T |
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| Q |
207 |
acaaatcttgagagaggacaatacc-tatactatctaatcacattgaataggattgtaacaataccgcgacaa |
278 |
Q |
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| T |
46734617 |
acaaatcttgagagaggacaataccttatactatctaatcacattgaataggattgtaacaataccgcgacaa |
46734545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 176 - 278
Target Start/End: Complemental strand, 46734538 - 46734435
Alignment:
| Q |
176 |
caatttaaaacctagattcgatgctgaaataacaaatcttgagagaggacaatacct-atactatctaatcacattgaataggattgtaacaataccgcg |
274 |
Q |
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| T |
46734538 |
caatttaaatcctagattcgatgccgaaagaacaaacctcgagagaatacaataccttatactatctattcacattgaataggattgtaacataaccgcg |
46734439 |
T |
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| Q |
275 |
acaa |
278 |
Q |
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| T |
46734438 |
acaa |
46734435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 253
Target Start/End: Complemental strand, 46734428 - 46734350
Alignment:
| Q |
176 |
caatttaaaacctagattcgatgctgaaataacaaatcttgagagaggacaatacc-tatactatctaatcacattgaa |
253 |
Q |
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| T |
46734428 |
caatttgaaacctagattcgaggctgaaagaacaaacctagagagaatatgataccttatactatctaattacattgaa |
46734350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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