View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4291-Insertion-40 (Length: 142)
Name: NF4291-Insertion-40
Description: NF4291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4291-Insertion-40 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 59; Significance: 2e-25; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 2e-25
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 28151410 - 28151468
Alignment:
| Q |
1 |
cttcttacaagtattattgttcattttttatatatttcattgcgttgggagcctactgc |
59 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28151410 |
cttcttacaagtattattgttcattttttatatatttcattgcgttgggagcctactgc |
28151468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 96 - 140
Target Start/End: Original strand, 28151505 - 28151549
Alignment:
| Q |
96 |
ctataatgaagtaagcctatttcagacgaaaatatctatagcgtg |
140 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28151505 |
ctataatgaagtaagcctatttcagacgaaaatatctatagcgtg |
28151549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 96 - 136
Target Start/End: Complemental strand, 28506778 - 28506738
Alignment:
| Q |
96 |
ctataatgaagtaagcctatttcagacgaaaatatctatag |
136 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
28506778 |
ctatcatgaagtaagcctatttcagacgaaaatatctatag |
28506738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University